version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 366 41.59 0 437014..438030 + 338 209694000 dusA VSAL_I0399 - tRNA-dihydrouridine synthase A 367 40.06 0 438149..438847 + 232 209694001 - VSAL_I0400 - hypothetical protein 368 38.46 0 438951..439223 + 90 209694002 - VSAL_I0401 - hypothetical protein 369 40.28 0 439340..441181 + 613 209694003 cysJ VSAL_I0402 - sulfite reductase [NADPH] flavoprotein alpha-component 370 41.54 0 441181..442911 + 576 209694004 cysI VSAL_I0403 - sulfite reductase [NADPH] hemoprotein beta-component 371 40.03 0 442904..443665 + 253 209694005 cysH VSAL_I0404 - phosphoadenosine phosphosulfate reductase 372 41.77 0 443742..444215 - 157 209694006 - VSAL_I0405 - hypothetical protein 373 46.22 +2 444332..444952 - 206 209694007 fklB VSAL_I0406 - FKBP-type peptidyl-prolyl cis-trans isomerase 374 37.71 0 445092..445754 + 220 209694008 - VSAL_I0407 - opacity-associated protein A 375 40.11 0 445766..446635 - 289 209694009 - VSAL_I0408 - integral membrane protein 376 39.51 0 446635..447087 - 150 209694010 - VSAL_I0409 - putative acetyltransferase 377 34.03 -1 447153..447725 - 190 209694011 - VSAL_I0410 - putative DNA-binding protein 378 39.09 0 447735..449507 - 590 209694012 - VSAL_I0411 - hemolysin 379 38.78 0 449511..449969 - 152 209694013 - VSAL_I0412 - membrane protein 380 38.03 0 450040..450465 - 141 209694014 - VSAL_I0413 - hypothetical protein 381 39.63 0 450478..451224 - 248 209694015 - VSAL_I0414 - hypothetical protein 382 39.08 0 451224..451832 - 202 209694016 - VSAL_I0415 - hypothetical protein 383 38.55 0 451784..452914 - 376 209694017 - VSAL_I0416 - hypothetical protein 384 39.09 0 452914..453504 - 196 209694018 - VSAL_I0417 - membrane protein 385 33.33 -1 453631..454044 + 137 209694019 - VSAL_I0418 - membrane protein 386 40.54 0 454084..456066 - 660 209694020 cpdB VSAL_I0419 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor 387 40.37 0 456434..457342 + 302 209694021 cysD VSAL_I0420 - sulfate adenylyltransferase subunit 2 388 40.50 0 457371..458807 + 478 209694022 cysN VSAL_I0421 - sulfate adenylyltransferase subunit 1 389 39.76 0 458830..460557 + 575 209694023 - VSAL_I0422 - ion transporter superfamily protein 390 39.02 0 460572..461204 + 210 209694024 cysC VSAL_I0423 - adenylylsulfate kinase 391 37.79 0 461248..462144 - 298 209694025 - VSAL_I0424 - hypothetical protein 392 36.21 -1 462468..462953 - 161 209694026 - VSAL_I0425 - hypothetical protein 393 39.92 0 462963..464222 - 419 209694027 - VSAL_I0426 - predicted permease 394 38.26 0 464216..464905 - 229 209694028 - VSAL_I0427 - ABC transporter, ATP-binding protein 395 41.12 0 464942..465583 - 213 209694029 - VSAL_I0428 - hypothetical protein 396 37.46 0 465635..465925 - 96 209694030 - VSAL_I0429 - membrane protein 397 37.86 0 465991..466542 - 183 209694031 - VSAL_I0430 - hypothetical protein 398 35.71 -1 466791..467000 + 69 209694032 - VSAL_I0431 - hypothetical protein 399 38.86 0 467069..467719 - 216 209694033 msrA VSAL_I0432 - peptide methionine sulfoxide reductase MSRA 400 40.48 0 467761..469482 + 573 209694034 - VSAL_I0433 - surface antigen protein 401 36.78 0 469479..473276 + 1265 209694035 - VSAL_I0434 - hypothetical protein 402 38.14 0 484735..485046 + 103 209694036 - VSAL_I0435 - transposase 403 36.21 -1 485043..485390 + 115 209694037 - VSAL_I0436 - transposase 404 39.72 0 485462..486949 + 495 209694038 - VSAL_I0437 - transposase 405 36.54 0 488216..488527 + 103 209694039 - VSAL_I0439 - transposase 406 38.85 0 488524..489393 + 289 209694040 - VSAL_I0440 - transposase 407 34.74 -1 489668..490945 - 425 209694041 - VSAL_I0441 - sodium/proton antiporter 408 38.93 0 491126..494806 + 1226 209694042 metH VSAL_I0442 - methionine synthase 409 35.94 -1 495249..496130 - 293 209694043 - VSAL_I0444 - transposase 410 38.92 0 497687..498796 + 369 209694044 - VSAL_I0445 - aminotransferase class-V 411 35.95 -1 498845..500602 - 585 209694045 - VSAL_I0446 - O-antigen polymerase 412 40.16 0 500682..503510 - 942 209694046 uvrA VSAL_I0447 - UvrABC system protein A 413 38.62 0 503682..504551 - 289 209694047 galU VSAL_I0448 - UTP-glucose-1-phosphate uridylyltransferase 414 33.09 -2 504688..505092 - 134 209694048 - VSAL_I0449 - hypothetical protein 415 39.17 0 505085..506215 - 376 209694049 - VSAL_I0450 - putative glycosyl transferase 416 37.89 0 506219..507424 - 401 209694050 - VSAL_I0451 - putative glycosyl transferase 417 38.54 0 507421..508419 - 332 209694051 - VSAL_I0452 - putative glycosyl transferase 418 36.23 -1 508412..509794 - 460 209694052 - VSAL_I0453 - membrane protein 419 34.49 -1 509794..510999 - 401 209694053 - VSAL_I0454 - membrane protein 420 34.04 -1 512441..513007 - 188 209694054 - VSAL_I0456 - transposase 421 35.70 -1 513025..513447 - 140 209694055 - VSAL_I0457 - transposase 422 40.21 0 514317..514898 - 193 209694056 - VSAL_I0458 - polysaccharide biosynthesis/export protein 423 36.52 0 514899..516215 - 438 209694057 - VSAL_I0459 - hypothetical protein 424 45.47 +1 517928..518479 + 183 209694058 ssb VSAL_I0461 - single-stranded DNA-binding protein 425 35.24 -1 518552..519181 - 209 209694059 - VSAL_I0462 - membrane protein 426 34.04 -1 519233..519799 - 188 209694060 - VSAL_I0463 - transposase 427 35.70 -1 519817..520239 - 140 209694061 - VSAL_I0464 - transposase 428 36.86 0 520546..522531 + 661 209694062 - VSAL_I0465 - putative membrane associated signaling protein 429 36.54 0 522657..524120 + 487 209694063 mshI VSAL_I0466 - type IV pilus, mannose-sensitive hemagglutinin D (MSHI) 430 34.43 -1 524113..524751 + 212 209694064 mshJ VSAL_I0467 - type IV pilus, mannose-sensitive hemagglutinin D (MSHJ) 431 36.84 0 524753..525094 + 113 209694065 mshK VSAL_I0468 - type IV pilus, mannose-sensitive hemagglutinin D (MSHK) 432 41.19 0 525107..526747 + 546 209694066 mshD VSAL_I0469 - type IV pilus, mannose-sensitive hemagglutinin D (MSHD) 433 38.52 0 526758..527606 + 282 209694067 mshM VSAL_I0470 - type IV pilus, mannose-sensitive hemagglutinin D (MSHM) 434 39.94 0 527603..528676 + 357 209694068 mshN VSAL_I0471 - type IV pilus, mannose-sensitive hemagglutinin D (MSHN) 435 41.16 0 530410..531636 + 408 209694069 mshG VSAL_I0473 - type IV pilus, mannose-sensitive hemagglutinin protein 436 35.10 -1 531636..532088 + 150 209694070 mshF VSAL_I0474 - type IV pilus, mannose-sensitive hemagglutinin protein MshF 437 41.23 0 532170..532739 + 189 209694071 mshB VSAL_I0475 - type IV pilus, prepilin-like protein (MSHB) 438 40.30 0 532892..533365 + 157 209694072 mshA VSAL_I0476 - type IV pilus, mannose-sensitive hemagglutinin A 439 39.07 0 533617..534087 + 156 209694073 mshA VSAL_I0477 - type IV pilus, mannose-sensitive hemagglutinin A 440 37.07 0 534214..534828 + 204 209694074 mshC VSAL_I0478 - type IV pilus, prepilin-like protein (MSHC) 441 38.05 0 534825..535418 + 197 209694075 mshD VSAL_I0479 - type IV pilus, prepilin-like protein (MSHD) 442 40.61 0 535418..536173 + 251 209694076 mshO VSAL_I0480 - exported protein MshO 443 40.00 0 536163..536597 + 144 209694077 mshP VSAL_I0481 - exported protein MshP 444 45.88 +2 541014..542057 + 347 209694078 mreB VSAL_I0483 - rod shape-determining protein MreB 445 37.53 0 542080..542937 + 285 209694079 mreC VSAL_I0484 - rod shape-determining protein MreC 446 40.24 0 542927..543418 + 163 209694080 mreD VSAL_I0485 - rod shape-determining protein MreD 447 39.76 0 543428..544003 + 191 209694081 - VSAL_I0486 - Maf-like protein 448 39.73 0 544023..545492 + 489 209694082 cafA VSAL_I0487 - ribonuclease G 449 38.74 0 545504..549367 + 1287 209694083 - VSAL_I0488 - hypothetical protein 450 43.40 +1 549469..550233 + 254 209694084 - VSAL_I0489 - putative carbon-nitrogen hydrolase 451 42.32 0 550344..551789 + 481 209694085 tldD VSAL_I0490 - protein TldD 452 39.07 0 551887..552426 - 179 209694086 - VSAL_I0491 - hypothetical protein 453 42.49 0 552536..553879 + 447 209694087 pmbA VSAL_I0492 - protein PmbA (protein TldE) 454 44.84 +1 553963..555318 - 451 209694088 - VSAL_I0493 - magnesium transporter 455 44.44 +1 555630..555908 - 92 209694089 ptsO VSAL_I0494 - phosphocarrier protein NPr 456 39.18 0 555911..556765 - 284 209694090 - VSAL_I0495 - ATP/GTP-binding protein 457 40.49 0 556789..557235 - 148 209694091 ptsN VSAL_I0496 - nitrogen regulatory IIA protein, PTS system 458 35.76 -1 557237..557524 - 95 209694092 - VSAL_I0497 - sigma-54 modulation protein 459 41.63 0 557544..559013 - 489 209694093 rpoN VSAL_I0498 - RNA polymerase sigma-54 factor (sigma-N) 460 40.63 0 559040..559765 - 241 209694094 - VSAL_I0499 - ABC transport protein, ATP-binding component 461 37.13 0 559768..560268 - 166 209694095 - VSAL_I0500 - hypothetical protein 462 36.70 0 560249..560812 - 187 209694096 - VSAL_I0501 - hypothetical protein 463 40.50 0 560809..561366 - 185 209694097 kdsC VSAL_I0502 - 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase 464 41.54 0 561366..562340 - 324 209694098 kdsD VSAL_I0503 - arabinose 5-phosphate isomerase 465 40.76 0 562544..563512 - 322 209694099 - VSAL_I0504 - sodium/calcium exchanger protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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