IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
360	 41.20	0	431463..431678	-	71	209693994	-	VSAL_I0392	-	hypothetical protein, putative phage gene
361	 35.70	-1	431804..432226	+	140	209693995	-	VSAL_I0393	-	transposase
362	 33.86	-1	432244..432810	+	188	209693996	-	VSAL_I0394	-	transposase
363	 36.03	-1	433433..434509	-	358	209693997	-	VSAL_I0396	-	hypothetical protein, putative phage gene
364	 33.43	-1	434540..435601	-	353	209693998	-	VSAL_I0397	-	shufflon-specific DNA recombinase
365	 38.10	0	435736..436806	-	356	209693999	-	VSAL_I0398	-	shufflon-specific DNA recombinase
366	 41.59	0	437014..438030	+	338	209694000	dusA	VSAL_I0399	-	tRNA-dihydrouridine synthase A
367	 40.06	0	438149..438847	+	232	209694001	-	VSAL_I0400	-	hypothetical protein
368	 38.46	0	438951..439223	+	90	209694002	-	VSAL_I0401	-	hypothetical protein
369	 40.28	0	439340..441181	+	613	209694003	cysJ	VSAL_I0402	-	sulfite reductase [NADPH] flavoprotein alpha-component
370	 41.54	0	441181..442911	+	576	209694004	cysI	VSAL_I0403	-	sulfite reductase [NADPH] hemoprotein beta-component
371	 40.03	0	442904..443665	+	253	209694005	cysH	VSAL_I0404	-	phosphoadenosine phosphosulfate reductase
372	 41.77	0	443742..444215	-	157	209694006	-	VSAL_I0405	-	hypothetical protein
373	 46.22	+2	444332..444952	-	206	209694007	fklB	VSAL_I0406	-	FKBP-type peptidyl-prolyl cis-trans isomerase
374	 37.71	0	445092..445754	+	220	209694008	-	VSAL_I0407	-	opacity-associated protein A
375	 40.11	0	445766..446635	-	289	209694009	-	VSAL_I0408	-	integral membrane protein
376	 39.51	0	446635..447087	-	150	209694010	-	VSAL_I0409	-	putative acetyltransferase
377	 34.03	-1	447153..447725	-	190	209694011	-	VSAL_I0410	-	putative DNA-binding protein
378	 39.09	0	447735..449507	-	590	209694012	-	VSAL_I0411	-	hemolysin
379	 38.78	0	449511..449969	-	152	209694013	-	VSAL_I0412	-	membrane protein
380	 38.03	0	450040..450465	-	141	209694014	-	VSAL_I0413	-	hypothetical protein
381	 39.63	0	450478..451224	-	248	209694015	-	VSAL_I0414	-	hypothetical protein
382	 39.08	0	451224..451832	-	202	209694016	-	VSAL_I0415	-	hypothetical protein
383	 38.55	0	451784..452914	-	376	209694017	-	VSAL_I0416	-	hypothetical protein
384	 39.09	0	452914..453504	-	196	209694018	-	VSAL_I0417	-	membrane protein
385	 33.33	-1	453631..454044	+	137	209694019	-	VSAL_I0418	-	membrane protein
386	 40.54	0	454084..456066	-	660	209694020	cpdB	VSAL_I0419	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
387	 40.37	0	456434..457342	+	302	209694021	cysD	VSAL_I0420	-	sulfate adenylyltransferase subunit 2
388	 40.50	0	457371..458807	+	478	209694022	cysN	VSAL_I0421	-	sulfate adenylyltransferase subunit 1
389	 39.76	0	458830..460557	+	575	209694023	-	VSAL_I0422	-	ion transporter superfamily protein
390	 39.02	0	460572..461204	+	210	209694024	cysC	VSAL_I0423	-	adenylylsulfate kinase
391	 37.79	0	461248..462144	-	298	209694025	-	VSAL_I0424	-	hypothetical protein
392	 36.21	-1	462468..462953	-	161	209694026	-	VSAL_I0425	-	hypothetical protein
393	 39.92	0	462963..464222	-	419	209694027	-	VSAL_I0426	-	predicted permease
394	 38.26	0	464216..464905	-	229	209694028	-	VSAL_I0427	-	ABC transporter, ATP-binding protein
395	 41.12	0	464942..465583	-	213	209694029	-	VSAL_I0428	-	hypothetical protein
396	 37.46	0	465635..465925	-	96	209694030	-	VSAL_I0429	-	membrane protein
397	 37.86	0	465991..466542	-	183	209694031	-	VSAL_I0430	-	hypothetical protein
398	 35.71	-1	466791..467000	+	69	209694032	-	VSAL_I0431	-	hypothetical protein
399	 38.86	0	467069..467719	-	216	209694033	msrA	VSAL_I0432	-	peptide methionine sulfoxide reductase MSRA
400	 40.48	0	467761..469482	+	573	209694034	-	VSAL_I0433	-	surface antigen protein
401	 36.78	0	469479..473276	+	1265	209694035	-	VSAL_I0434	-	hypothetical protein
402	 38.14	0	484735..485046	+	103	209694036	-	VSAL_I0435	-	transposase
403	 36.21	-1	485043..485390	+	115	209694037	-	VSAL_I0436	-	transposase
404	 39.72	0	485462..486949	+	495	209694038	-	VSAL_I0437	-	transposase
405	 36.54	0	488216..488527	+	103	209694039	-	VSAL_I0439	-	transposase
406	 38.85	0	488524..489393	+	289	209694040	-	VSAL_I0440	-	transposase
407	 34.74	-1	489668..490945	-	425	209694041	-	VSAL_I0441	-	sodium/proton antiporter
408	 38.93	0	491126..494806	+	1226	209694042	metH	VSAL_I0442	-	methionine synthase
409	 35.94	-1	495249..496130	-	293	209694043	-	VSAL_I0444	-	transposase
410	 38.92	0	497687..498796	+	369	209694044	-	VSAL_I0445	-	aminotransferase class-V
411	 35.95	-1	498845..500602	-	585	209694045	-	VSAL_I0446	-	O-antigen polymerase
412	 40.16	0	500682..503510	-	942	209694046	uvrA	VSAL_I0447	-	UvrABC system protein A
413	 38.62	0	503682..504551	-	289	209694047	galU	VSAL_I0448	-	UTP-glucose-1-phosphate uridylyltransferase
414	 33.09	-2	504688..505092	-	134	209694048	-	VSAL_I0449	-	hypothetical protein
415	 39.17	0	505085..506215	-	376	209694049	-	VSAL_I0450	-	putative glycosyl transferase
416	 37.89	0	506219..507424	-	401	209694050	-	VSAL_I0451	-	putative glycosyl transferase
417	 38.54	0	507421..508419	-	332	209694051	-	VSAL_I0452	-	putative glycosyl transferase
418	 36.23	-1	508412..509794	-	460	209694052	-	VSAL_I0453	-	membrane protein
419	 34.49	-1	509794..510999	-	401	209694053	-	VSAL_I0454	-	membrane protein
420	 34.04	-1	512441..513007	-	188	209694054	-	VSAL_I0456	-	transposase
421	 35.70	-1	513025..513447	-	140	209694055	-	VSAL_I0457	-	transposase
422	 40.21	0	514317..514898	-	193	209694056	-	VSAL_I0458	-	polysaccharide biosynthesis/export protein
423	 36.52	0	514899..516215	-	438	209694057	-	VSAL_I0459	-	hypothetical protein
424	 45.47	+1	517928..518479	+	183	209694058	ssb	VSAL_I0461	-	single-stranded DNA-binding protein
425	 35.24	-1	518552..519181	-	209	209694059	-	VSAL_I0462	-	membrane protein
426	 34.04	-1	519233..519799	-	188	209694060	-	VSAL_I0463	-	transposase
427	 35.70	-1	519817..520239	-	140	209694061	-	VSAL_I0464	-	transposase
428	 36.86	0	520546..522531	+	661	209694062	-	VSAL_I0465	-	putative membrane associated signaling protein
429	 36.54	0	522657..524120	+	487	209694063	mshI	VSAL_I0466	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHI)
430	 34.43	-1	524113..524751	+	212	209694064	mshJ	VSAL_I0467	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHJ)
431	 36.84	0	524753..525094	+	113	209694065	mshK	VSAL_I0468	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHK)
432	 41.19	0	525107..526747	+	546	209694066	mshD	VSAL_I0469	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHD)
433	 38.52	0	526758..527606	+	282	209694067	mshM	VSAL_I0470	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHM)
434	 39.94	0	527603..528676	+	357	209694068	mshN	VSAL_I0471	-	type IV pilus, mannose-sensitive hemagglutinin D (MSHN)
435	 41.16	0	530410..531636	+	408	209694069	mshG	VSAL_I0473	-	type IV pilus, mannose-sensitive hemagglutinin protein
436	 35.10	-1	531636..532088	+	150	209694070	mshF	VSAL_I0474	-	type IV pilus, mannose-sensitive hemagglutinin protein MshF
437	 41.23	0	532170..532739	+	189	209694071	mshB	VSAL_I0475	-	type IV pilus, prepilin-like protein (MSHB)
438	 40.30	0	532892..533365	+	157	209694072	mshA	VSAL_I0476	-	type IV pilus, mannose-sensitive hemagglutinin A
439	 39.07	0	533617..534087	+	156	209694073	mshA	VSAL_I0477	-	type IV pilus, mannose-sensitive hemagglutinin A
440	 37.07	0	534214..534828	+	204	209694074	mshC	VSAL_I0478	-	type IV pilus, prepilin-like protein (MSHC)
441	 38.05	0	534825..535418	+	197	209694075	mshD	VSAL_I0479	-	type IV pilus, prepilin-like protein (MSHD)
442	 40.61	0	535418..536173	+	251	209694076	mshO	VSAL_I0480	-	exported protein MshO
443	 40.00	0	536163..536597	+	144	209694077	mshP	VSAL_I0481	-	exported protein MshP
444	 45.88	+2	541014..542057	+	347	209694078	mreB	VSAL_I0483	-	rod shape-determining protein MreB
445	 37.53	0	542080..542937	+	285	209694079	mreC	VSAL_I0484	-	rod shape-determining protein MreC
446	 40.24	0	542927..543418	+	163	209694080	mreD	VSAL_I0485	-	rod shape-determining protein MreD
447	 39.76	0	543428..544003	+	191	209694081	-	VSAL_I0486	-	Maf-like protein
448	 39.73	0	544023..545492	+	489	209694082	cafA	VSAL_I0487	-	ribonuclease G
449	 38.74	0	545504..549367	+	1287	209694083	-	VSAL_I0488	-	hypothetical protein
450	 43.40	+1	549469..550233	+	254	209694084	-	VSAL_I0489	-	putative carbon-nitrogen hydrolase
451	 42.32	0	550344..551789	+	481	209694085	tldD	VSAL_I0490	-	protein TldD
452	 39.07	0	551887..552426	-	179	209694086	-	VSAL_I0491	-	hypothetical protein
453	 42.49	0	552536..553879	+	447	209694087	pmbA	VSAL_I0492	-	protein PmbA (protein TldE)
454	 44.84	+1	553963..555318	-	451	209694088	-	VSAL_I0493	-	magnesium transporter
455	 44.44	+1	555630..555908	-	92	209694089	ptsO	VSAL_I0494	-	phosphocarrier protein NPr
456	 39.18	0	555911..556765	-	284	209694090	-	VSAL_I0495	-	ATP/GTP-binding protein
457	 40.49	0	556789..557235	-	148	209694091	ptsN	VSAL_I0496	-	nitrogen regulatory IIA protein, PTS system
458	 35.76	-1	557237..557524	-	95	209694092	-	VSAL_I0497	-	sigma-54 modulation protein
459	 41.63	0	557544..559013	-	489	209694093	rpoN	VSAL_I0498	-	RNA polymerase sigma-54 factor (sigma-N)
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.