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Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 309 45.06 +1 372285..372719 + 144 209693943 rplO VSAL_I0339 - 50S ribosomal protein L15 310 43.09 +1 372740..374071 + 443 209693944 secY VSAL_I0340 - preprotein translocase SecY subunit 311 46.78 +2 374362..374718 + 118 209693945 rpsM VSAL_I0341 - 30S ribosomal protein S13 312 47.69 +2 374740..375129 + 129 209693946 rpsK VSAL_I0342 - 30S ribosomal protein S11 313 42.67 +1 375161..375781 + 206 209693947 rpsD VSAL_I0343 - 30S ribosomal protein S4 314 44.24 +1 375805..376794 + 329 209693948 rpoA VSAL_I0344 - RNA polymerase alpha-subunit 315 46.19 +2 376831..377211 + 126 209693949 rplQ VSAL_I0345 - 50S ribosomal protein L17 316 38.28 0 377275..378285 - 336 209693950 fbp VSAL_I0346 - fructose-1,6-bisphosphatase 317 41.78 0 378499..379860 + 453 209693951 mpl VSAL_I0347 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat ligase 318 41.75 0 379862..380491 + 209 209693952 - VSAL_I0348 - probable aromatic acid decarboxylase 319 38.94 0 380696..381712 + 338 209693953 tbpA VSAL_I0349 - thiamine-binding periplasmic protein precursor 320 38.82 0 381775..383397 + 540 209693954 thiP VSAL_I0350 - thiamine transport system permease protein ThiP 321 39.85 0 383397..384071 + 224 209693955 thiQ VSAL_I0351 - thiamine transport ATP-binding protein ThiQ 322 41.92 0 384295..387204 + 969 209693956 rapA VSAL_I0352 - RNA polymerase-associated protein RapA (ATP-dependent helicase hepA) 323 43.13 +1 387207..387941 + 244 209693957 rluA VSAL_I0353 - ribosomal large subunit pseudouridine synthase A 324 38.13 0 388002..388439 - 145 209693958 uspF VSAL_I0354 - universal stress protein F 325 43.45 +1 388495..391074 - 859 209693959 - VSAL_I0355 - integral membrane transport protein 326 41.85 0 391308..392282 - 324 209693960 - VSAL_I0356 - hypothetical protein 327 39.49 0 394047..394517 - 156 209693961 argR VSAL_I0358 - arginine repressor 328 42.84 +1 394789..395724 + 311 209693962 mdh VSAL_I0359 - malate dehydrogenase 329 40.95 0 395817..396788 - 323 209693963 ispB VSAL_I0360 - octaprenyl-diphosphate synthase 330 45.19 +1 397065..397376 + 103 209693964 rplU VSAL_I0361 - 50S ribosomal protein L21 331 43.02 +1 397394..397651 + 85 209693965 rpmA VSAL_I0362 - 50S ribosomal protein L27 332 43.94 +1 397929..399107 + 392 209693966 - VSAL_I0363 - putative GTP-binding protein 333 41.41 0 399220..399999 + 259 209693967 - VSAL_I0364 - membrane protein 334 39.84 0 399999..400490 + 163 209693968 - VSAL_I0365 - membrane protein 335 38.70 0 400556..401077 + 173 209693969 folA VSAL_I0366 - dihydrofolate reductase type 3 336 40.39 0 401288..402109 - 273 209693970 apaH VSAL_I0367 - bis(5'nucleosyl)-tetraphosphatase 337 42.33 0 402206..403039 - 277 209693971 ksgA VSAL_I0368 - dimethyladenosine transferase 338 40.61 0 403036..404025 - 329 209693972 pdxA VSAL_I0369 - 4-hydroxythreonine-4-phosphate dehydrogenase 339 39.59 0 404018..405328 - 436 209693973 surA VSAL_I0370 - chaperone SurA precursor 340 38.39 0 405399..407753 - 784 209693974 imp VSAL_I0371 - organic solvent tolerance protein precursor 341 39.91 0 407960..408811 + 283 209693975 djlA VSAL_I0372 - DnaJ-like protein DjlA 342 38.33 0 408841..409680 - 279 209693976 - VSAL_I0373 - exported protein 343 40.46 0 409804..410406 - 200 209693977 leuD VSAL_I0374 - 3-isopropylmalate dehydratase small subunit 344 44.92 +1 410418..411833 - 471 209693978 leuC VSAL_I0375 - 3-isopropylmalate dehydratase large subunit 345 43.13 +1 411849..412940 - 363 209693979 leuB VSAL_I0376 - 3-isopropylmalate dehydrogenase 346 42.57 +1 413018..414565 - 515 209693980 leuA VSAL_I0377 - 2-isopropylmalate synthase 347 38.79 0 415681..417000 + 439 209693981 - VSAL_I0379 - hypothetical protein 348 42.03 0 416997..420101 + 1034 209693982 - VSAL_I0380 - integral membrane protein, AcrB/AcrD/AcrF family 349 39.72 0 420124..421125 - 333 209693983 - VSAL_I0381 - hypothetical protein 350 42.27 0 421307..422704 + 465 209693984 dnaB VSAL_I0382 - replicative DNA helicase 351 43.36 +1 422726..423802 + 358 209693985 alr VSAL_I0383 - alanine racemase 352 41.77 0 423817..425037 + 406 209693986 - VSAL_I0384 - hypothetical protein 353 39.75 0 425233..426885 + 550 209693987 pgi VSAL_I0385 - glucose-6-phosphate isomerase 354 40.00 0 426981..427475 - 164 209693988 - VSAL_I0386 - putative chemotaxis protein 355 36.67 0 427496..427945 - 149 209693989 zur VSAL_I0387 - zinc uptake regulation protein 356 33.33 -1 428519..428800 + 93 209693990 - VSAL_I0388 - hypothetical protein, putative phage gene 357 33.69 -1 428844..429683 - 279 209693991 - VSAL_I0389 - hypothetical protein, putative phage gene 358 27.74 -2 429880..430272 + 130 209693992 - VSAL_I0390 - hypothetical protein, putative phage gene 359 32.85 -2 430429..431454 + 341 209693993 - VSAL_I0391 - hypothetical protein, ADP-ribose binding protein 360 41.20 0 431463..431678 - 71 209693994 - VSAL_I0392 - hypothetical protein, putative phage gene 361 35.70 -1 431804..432226 + 140 209693995 - VSAL_I0393 - transposase 362 33.86 -1 432244..432810 + 188 209693996 - VSAL_I0394 - transposase 363 36.03 -1 433433..434509 - 358 209693997 - VSAL_I0396 - hypothetical protein, putative phage gene 364 33.43 -1 434540..435601 - 353 209693998 - VSAL_I0397 - shufflon-specific DNA recombinase 365 38.10 0 435736..436806 - 356 209693999 - VSAL_I0398 - shufflon-specific DNA recombinase 366 41.59 0 437014..438030 + 338 209694000 dusA VSAL_I0399 - tRNA-dihydrouridine synthase A 367 40.06 0 438149..438847 + 232 209694001 - VSAL_I0400 - hypothetical protein 368 38.46 0 438951..439223 + 90 209694002 - VSAL_I0401 - hypothetical protein 369 40.28 0 439340..441181 + 613 209694003 cysJ VSAL_I0402 - sulfite reductase [NADPH] flavoprotein alpha-component 370 41.54 0 441181..442911 + 576 209694004 cysI VSAL_I0403 - sulfite reductase [NADPH] hemoprotein beta-component 371 40.03 0 442904..443665 + 253 209694005 cysH VSAL_I0404 - phosphoadenosine phosphosulfate reductase 372 41.77 0 443742..444215 - 157 209694006 - VSAL_I0405 - hypothetical protein 373 46.22 +2 444332..444952 - 206 209694007 fklB VSAL_I0406 - FKBP-type peptidyl-prolyl cis-trans isomerase 374 37.71 0 445092..445754 + 220 209694008 - VSAL_I0407 - opacity-associated protein A 375 40.11 0 445766..446635 - 289 209694009 - VSAL_I0408 - integral membrane protein 376 39.51 0 446635..447087 - 150 209694010 - VSAL_I0409 - putative acetyltransferase 377 34.03 -1 447153..447725 - 190 209694011 - VSAL_I0410 - putative DNA-binding protein 378 39.09 0 447735..449507 - 590 209694012 - VSAL_I0411 - hemolysin 379 38.78 0 449511..449969 - 152 209694013 - VSAL_I0412 - membrane protein 380 38.03 0 450040..450465 - 141 209694014 - VSAL_I0413 - hypothetical protein 381 39.63 0 450478..451224 - 248 209694015 - VSAL_I0414 - hypothetical protein 382 39.08 0 451224..451832 - 202 209694016 - VSAL_I0415 - hypothetical protein 383 38.55 0 451784..452914 - 376 209694017 - VSAL_I0416 - hypothetical protein 384 39.09 0 452914..453504 - 196 209694018 - VSAL_I0417 - membrane protein 385 33.33 -1 453631..454044 + 137 209694019 - VSAL_I0418 - membrane protein 386 40.54 0 454084..456066 - 660 209694020 cpdB VSAL_I0419 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor 387 40.37 0 456434..457342 + 302 209694021 cysD VSAL_I0420 - sulfate adenylyltransferase subunit 2 388 40.50 0 457371..458807 + 478 209694022 cysN VSAL_I0421 - sulfate adenylyltransferase subunit 1 389 39.76 0 458830..460557 + 575 209694023 - VSAL_I0422 - ion transporter superfamily protein 390 39.02 0 460572..461204 + 210 209694024 cysC VSAL_I0423 - adenylylsulfate kinase 391 37.79 0 461248..462144 - 298 209694025 - VSAL_I0424 - hypothetical protein 392 36.21 -1 462468..462953 - 161 209694026 - VSAL_I0425 - hypothetical protein 393 39.92 0 462963..464222 - 419 209694027 - VSAL_I0426 - predicted permease 394 38.26 0 464216..464905 - 229 209694028 - VSAL_I0427 - ABC transporter, ATP-binding protein 395 41.12 0 464942..465583 - 213 209694029 - VSAL_I0428 - hypothetical protein 396 37.46 0 465635..465925 - 96 209694030 - VSAL_I0429 - membrane protein 397 37.86 0 465991..466542 - 183 209694031 - VSAL_I0430 - hypothetical protein 398 35.71 -1 466791..467000 + 69 209694032 - VSAL_I0431 - hypothetical protein 399 38.86 0 467069..467719 - 216 209694033 msrA VSAL_I0432 - peptide methionine sulfoxide reductase MSRA 400 40.48 0 467761..469482 + 573 209694034 - VSAL_I0433 - surface antigen protein 401 36.78 0 469479..473276 + 1265 209694035 - VSAL_I0434 - hypothetical protein 402 38.14 0 484735..485046 + 103 209694036 - VSAL_I0435 - transposase 403 36.21 -1 485043..485390 + 115 209694037 - VSAL_I0436 - transposase 404 39.72 0 485462..486949 + 495 209694038 - VSAL_I0437 - transposase 405 36.54 0 488216..488527 + 103 209694039 - VSAL_I0439 - transposase 406 38.85 0 488524..489393 + 289 209694040 - VSAL_I0440 - transposase 407 34.74 -1 489668..490945 - 425 209694041 - VSAL_I0441 - sodium/proton antiporter 408 38.93 0 491126..494806 + 1226 209694042 metH VSAL_I0442 - methionine synthase 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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