IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
278	 37.25	0	351827..352540	+	237	209693912	-	VSAL_I0306	-	putative DNA-binding protein
279	 40.46	0	352537..352929	+	130	209693913	dsrE	VSAL_I0307	-	intracellular sulfur oxidation protein DsrE
280	 35.01	-1	352959..353315	+	118	209693914	dsrF	VSAL_I0308	-	intracellular sulfur oxidation protein DsrF
281	 31.25	-2	353325..353612	+	95	209693915	-	VSAL_I0309	-	hypothetical protein
282	 45.60	+1	353778..354152	+	124	209693916	rpsL	VSAL_I0310	-	30S ribosomal protein S12
283	 43.95	+1	354263..354733	+	156	209693917	rpsG	VSAL_I0311	-	30S ribosomal protein S7
284	 43.58	+1	354867..356954	+	695	209693918	fusA	VSAL_I0312	-	elongation factor G
285	 44.05	+1	357073..358257	+	394	209693919	tuf	VSAL_I0313	-	elongation factor Tu
286	 38.14	0	359387..359698	+	103	209693920	-	VSAL_I0315	-	transposase
287	 36.21	-1	359695..360042	+	115	209693921	-	VSAL_I0316	-	transposase
288	 35.94	-1	360130..361011	-	293	209693922	-	VSAL_I0317	-	transposase
289	 44.23	+1	363557..363868	+	103	209693923	rpsJ	VSAL_I0319	-	30S ribosomal subunit protein S10
290	 44.60	+1	363881..364510	+	209	209693924	rplC	VSAL_I0320	-	50S ribosomal protein L3
291	 44.61	+1	364528..365130	+	200	209693925	rplD	VSAL_I0321	-	50S ribosomal protein L4
292	 41.25	0	365127..365429	+	100	209693926	rplW	VSAL_I0322	-	50S ribosomal protein L23
293	 46.42	+2	365445..366269	+	274	209693927	rplB	VSAL_I0323	-	50S ribosomal protein L2
294	 45.88	+2	366289..366567	+	92	209693928	rpsS	VSAL_I0324	-	30S ribosomal protein S19
295	 42.94	+1	366578..366910	+	110	209693929	rplV	VSAL_I0325	-	50S ribosomal subunit protein L22
296	 47.78	+2	366930..367628	+	232	209693930	rpsC	VSAL_I0326	-	30S ribosomal subunit protein S3
297	 47.93	+2	367640..368050	+	136	209693931	rplP	VSAL_I0327	-	50S ribosomal subunit protein L16
298	 41.67	0	368050..368241	+	63	209693932	rpmC	VSAL_I0328	-	50S ribosomal protein L29
299	 40.78	0	368241..368495	+	84	209693933	rpsQ	VSAL_I0329	-	30S ribosomal protein S17
300	 45.97	+2	368658..369029	+	123	209693934	rplN	VSAL_I0330	-	50S ribosomal protein L14
301	 39.62	0	369040..369357	+	105	209693935	rplX	VSAL_I0331	-	50S ribosomal protein L24
302	 45.37	+1	369385..369924	+	179	209693936	rplE	VSAL_I0332	-	50S ribosomal protein L5
303	 42.81	+1	369942..370247	+	101	209693937	rpsN	VSAL_I0333	-	30S ribosomal protein S14
304	 43.51	+1	370277..370669	+	130	209693938	rpsH	VSAL_I0334	-	30S ribosomal protein S8
305	 43.63	+1	370682..371215	+	177	209693939	rplF	VSAL_I0335	-	50E ribosomal protein L6
306	 48.31	+2	371225..371578	+	117	209693940	rplR	VSAL_I0336	-	50S ribosomal protein L18
307	 44.31	+1	371593..372093	+	166	209693941	rpsE	VSAL_I0337	-	30S ribosomal protein S5
308	 42.78	+1	372099..372278	+	59	209693942	rpmD	VSAL_I0338	-	50S ribosomal protein L30
309	 45.06	+1	372285..372719	+	144	209693943	rplO	VSAL_I0339	-	50S ribosomal protein L15
310	 43.09	+1	372740..374071	+	443	209693944	secY	VSAL_I0340	-	preprotein translocase SecY subunit
311	 46.78	+2	374362..374718	+	118	209693945	rpsM	VSAL_I0341	-	30S ribosomal protein S13
312	 47.69	+2	374740..375129	+	129	209693946	rpsK	VSAL_I0342	-	30S ribosomal protein S11
313	 42.67	+1	375161..375781	+	206	209693947	rpsD	VSAL_I0343	-	30S ribosomal protein S4
314	 44.24	+1	375805..376794	+	329	209693948	rpoA	VSAL_I0344	-	RNA polymerase alpha-subunit
315	 46.19	+2	376831..377211	+	126	209693949	rplQ	VSAL_I0345	-	50S ribosomal protein L17
316	 38.28	0	377275..378285	-	336	209693950	fbp	VSAL_I0346	-	fructose-1,6-bisphosphatase
317	 41.78	0	378499..379860	+	453	209693951	mpl	VSAL_I0347	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat ligase
318	 41.75	0	379862..380491	+	209	209693952	-	VSAL_I0348	-	probable aromatic acid decarboxylase
319	 38.94	0	380696..381712	+	338	209693953	tbpA	VSAL_I0349	-	thiamine-binding periplasmic protein precursor
320	 38.82	0	381775..383397	+	540	209693954	thiP	VSAL_I0350	-	thiamine transport system permease protein ThiP
321	 39.85	0	383397..384071	+	224	209693955	thiQ	VSAL_I0351	-	thiamine transport ATP-binding protein ThiQ
322	 41.92	0	384295..387204	+	969	209693956	rapA	VSAL_I0352	-	RNA polymerase-associated protein RapA (ATP-dependent helicase hepA)
323	 43.13	+1	387207..387941	+	244	209693957	rluA	VSAL_I0353	-	ribosomal large subunit pseudouridine synthase A
324	 38.13	0	388002..388439	-	145	209693958	uspF	VSAL_I0354	-	universal stress protein F
325	 43.45	+1	388495..391074	-	859	209693959	-	VSAL_I0355	-	integral membrane transport protein
326	 41.85	0	391308..392282	-	324	209693960	-	VSAL_I0356	-	hypothetical protein
327	 39.49	0	394047..394517	-	156	209693961	argR	VSAL_I0358	-	arginine repressor
328	 42.84	+1	394789..395724	+	311	209693962	mdh	VSAL_I0359	-	malate dehydrogenase
329	 40.95	0	395817..396788	-	323	209693963	ispB	VSAL_I0360	-	octaprenyl-diphosphate synthase
330	 45.19	+1	397065..397376	+	103	209693964	rplU	VSAL_I0361	-	50S ribosomal protein L21
331	 43.02	+1	397394..397651	+	85	209693965	rpmA	VSAL_I0362	-	50S ribosomal protein L27
332	 43.94	+1	397929..399107	+	392	209693966	-	VSAL_I0363	-	putative GTP-binding protein
333	 41.41	0	399220..399999	+	259	209693967	-	VSAL_I0364	-	membrane protein
334	 39.84	0	399999..400490	+	163	209693968	-	VSAL_I0365	-	membrane protein
335	 38.70	0	400556..401077	+	173	209693969	folA	VSAL_I0366	-	dihydrofolate reductase type 3
336	 40.39	0	401288..402109	-	273	209693970	apaH	VSAL_I0367	-	bis(5'nucleosyl)-tetraphosphatase
337	 42.33	0	402206..403039	-	277	209693971	ksgA	VSAL_I0368	-	dimethyladenosine transferase
338	 40.61	0	403036..404025	-	329	209693972	pdxA	VSAL_I0369	-	4-hydroxythreonine-4-phosphate dehydrogenase
339	 39.59	0	404018..405328	-	436	209693973	surA	VSAL_I0370	-	chaperone SurA precursor
340	 38.39	0	405399..407753	-	784	209693974	imp	VSAL_I0371	-	organic solvent tolerance protein precursor
341	 39.91	0	407960..408811	+	283	209693975	djlA	VSAL_I0372	-	DnaJ-like protein DjlA
342	 38.33	0	408841..409680	-	279	209693976	-	VSAL_I0373	-	exported protein
343	 40.46	0	409804..410406	-	200	209693977	leuD	VSAL_I0374	-	3-isopropylmalate dehydratase small subunit
344	 44.92	+1	410418..411833	-	471	209693978	leuC	VSAL_I0375	-	3-isopropylmalate dehydratase large subunit
345	 43.13	+1	411849..412940	-	363	209693979	leuB	VSAL_I0376	-	3-isopropylmalate dehydrogenase
346	 42.57	+1	413018..414565	-	515	209693980	leuA	VSAL_I0377	-	2-isopropylmalate synthase
347	 38.79	0	415681..417000	+	439	209693981	-	VSAL_I0379	-	hypothetical protein
348	 42.03	0	416997..420101	+	1034	209693982	-	VSAL_I0380	-	integral membrane protein, AcrB/AcrD/AcrF family
349	 39.72	0	420124..421125	-	333	209693983	-	VSAL_I0381	-	hypothetical protein
350	 42.27	0	421307..422704	+	465	209693984	dnaB	VSAL_I0382	-	replicative DNA helicase
351	 43.36	+1	422726..423802	+	358	209693985	alr	VSAL_I0383	-	alanine racemase
352	 41.77	0	423817..425037	+	406	209693986	-	VSAL_I0384	-	hypothetical protein
353	 39.75	0	425233..426885	+	550	209693987	pgi	VSAL_I0385	-	glucose-6-phosphate isomerase
354	 40.00	0	426981..427475	-	164	209693988	-	VSAL_I0386	-	putative chemotaxis protein
355	 36.67	0	427496..427945	-	149	209693989	zur	VSAL_I0387	-	zinc uptake regulation protein
356	 33.33	-1	428519..428800	+	93	209693990	-	VSAL_I0388	-	hypothetical protein, putative phage gene
357	 33.69	-1	428844..429683	-	279	209693991	-	VSAL_I0389	-	hypothetical protein, putative phage gene
358	 27.74	-2	429880..430272	+	130	209693992	-	VSAL_I0390	-	hypothetical protein, putative phage gene
359	 32.85	-2	430429..431454	+	341	209693993	-	VSAL_I0391	-	hypothetical protein, ADP-ribose binding protein
360	 41.20	0	431463..431678	-	71	209693994	-	VSAL_I0392	-	hypothetical protein, putative phage gene
361	 35.70	-1	431804..432226	+	140	209693995	-	VSAL_I0393	-	transposase
362	 33.86	-1	432244..432810	+	188	209693996	-	VSAL_I0394	-	transposase
363	 36.03	-1	433433..434509	-	358	209693997	-	VSAL_I0396	-	hypothetical protein, putative phage gene
364	 33.43	-1	434540..435601	-	353	209693998	-	VSAL_I0397	-	shufflon-specific DNA recombinase
365	 38.10	0	435736..436806	-	356	209693999	-	VSAL_I0398	-	shufflon-specific DNA recombinase
366	 41.59	0	437014..438030	+	338	209694000	dusA	VSAL_I0399	-	tRNA-dihydrouridine synthase A
367	 40.06	0	438149..438847	+	232	209694001	-	VSAL_I0400	-	hypothetical protein
368	 38.46	0	438951..439223	+	90	209694002	-	VSAL_I0401	-	hypothetical protein
369	 40.28	0	439340..441181	+	613	209694003	cysJ	VSAL_I0402	-	sulfite reductase [NADPH] flavoprotein alpha-component
370	 41.54	0	441181..442911	+	576	209694004	cysI	VSAL_I0403	-	sulfite reductase [NADPH] hemoprotein beta-component
371	 40.03	0	442904..443665	+	253	209694005	cysH	VSAL_I0404	-	phosphoadenosine phosphosulfate reductase
372	 41.77	0	443742..444215	-	157	209694006	-	VSAL_I0405	-	hypothetical protein
373	 46.22	+2	444332..444952	-	206	209694007	fklB	VSAL_I0406	-	FKBP-type peptidyl-prolyl cis-trans isomerase
374	 37.71	0	445092..445754	+	220	209694008	-	VSAL_I0407	-	opacity-associated protein A
375	 40.11	0	445766..446635	-	289	209694009	-	VSAL_I0408	-	integral membrane protein
376	 39.51	0	446635..447087	-	150	209694010	-	VSAL_I0409	-	putative acetyltransferase
377	 34.03	-1	447153..447725	-	190	209694011	-	VSAL_I0410	-	putative DNA-binding protein
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.