version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2712 41.21 0 3193951..3195156 + 401 209696346 - VSAL_I2949 - putative FAD dependent oxidoreductase 2713 37.78 0 3197135..3197449 + 104 209696347 - VSAL_I2951 - transposase 2714 35.92 -1 3197446..3197793 + 115 209696348 - VSAL_I2952 - transposase 2715 39.65 0 3197865..3199352 + 495 209696349 - VSAL_I2953 - transposase 2716 39.63 0 3200094..3200681 - 195 209696350 - VSAL_I2954 - hypothetical protein 2717 43.04 +1 3200681..3201700 - 339 209696351 - VSAL_I2955 - putative lipoprotein 2718 45.75 +2 3201855..3202490 + 211 209696352 eda VSAL_I2956 - KHG/KDPG aldolase 2719 36.21 -1 3204396..3204743 - 115 209696353 - VSAL_I2959 - transposase 2720 37.78 0 3204740..3205054 - 104 209696354 - VSAL_I2960 - transposase 2721 42.07 0 3205351..3205785 + 144 209696355 ibpA VSAL_I2961 - small heat shock protein 2722 39.14 0 3205841..3207166 - 441 209696356 - VSAL_I2962 - transposase 2723 42.87 +1 3207539..3208786 - 415 209696357 avtA VSAL_I2963 - valine--pyruvate aminotransferase (alanine--valine transaminase) 2724 44.91 +1 3209005..3209937 + 310 209696358 glyQ VSAL_I2964 - glycine-tRNA synthetase, alpha subunit 2725 44.22 +1 3209940..3212006 + 688 209696359 glyS VSAL_I2965 - glycine-tRNA synthetase, beta subunit 2726 42.22 0 3212151..3213815 + 554 209696360 malS VSAL_I2966 - alpha-amylase precursor 2727 38.70 0 3213954..3214214 + 86 209696361 - VSAL_I2967 - hypothetical protein 2728 44.05 +1 3214247..3214498 - 83 209696362 - VSAL_I2968 - SirA-like protein 2729 40.70 0 3214660..3215853 + 397 209696363 - VSAL_I2969 - transposase 2730 36.46 0 3216114..3216305 + 63 209696364 - VSAL_I2970 - hypothetical protein 2731 39.60 0 3216466..3217407 + 313 209696365 - VSAL_I2971 - HTH-type transcriptional regulator, LysR family 2732 44.34 +1 3217530..3218510 - 326 209696366 - VSAL_I2972 - putative zinc-binding alcohol dehydrogenase 2733 45.02 +1 3219285..3220448 - 387 209696367 fadA VSAL_I2973 - fatty oxidation complex beta subunit, 3-ketoacyl-CoA thiolase 2734 43.42 +1 3220462..3222642 - 726 209696368 fadB VSAL_I2974 - fatty oxidation complex alpha subunit, enoyl-CoA hydratase 2735 41.79 0 3222885..3223499 + 204 209696369 - VSAL_I2975 - hypothetical protein 2736 41.63 0 3223557..3225014 + 485 209696370 trkH VSAL_I2976 - Trk system potassium uptake protein TrkH 2737 38.67 0 3225042..3225566 + 174 209696371 hemG VSAL_I2977 - protoporphyrinogen oxidase 2738 42.98 +1 3225765..3226106 - 113 209696372 - VSAL_I2978 - hypothetical protein 2739 37.58 0 3226206..3228962 + 918 209696373 - VSAL_I2979 - Zn-dependent peptidase 2740 35.90 -1 3229064..3229258 + 64 209696374 - VSAL_I2980 - hypothetical protein 2741 40.16 0 3229350..3229730 - 126 209696375 - VSAL_I2981 - CrcB-like protein 2742 37.35 0 3229912..3230334 + 140 209696376 - VSAL_I2982 - hypothetical protein 2743 43.04 +1 3230776..3232722 + 648 209696377 thiC VSAL_I2983 - thiamine biosynthesis protein ThiC 2744 40.68 0 3232795..3233475 + 226 209696378 thiE VSAL_I2984 - thiamine-phosphate pyrophosphorylase 2745 42.17 0 3233468..3234316 + 282 209696379 thiF VSAL_I2985 - thiamine biosynthesis adenylyltransferase ThiF 2746 39.44 0 3234309..3234521 + 70 209696380 thiS VSAL_I2986 - thiamine biosynthesis protein ThiS 2747 46.30 +2 3234523..3235293 + 256 209696381 thiG VSAL_I2987 - thiamine biosynthesis protein ThiG 2748 42.50 0 3235316..3236428 + 370 209696382 thiH VSAL_I2988 - thiamine biosynthesis protein ThiH 2749 41.34 0 3236553..3238976 - 807 209696383 - VSAL_I2989 - putative beta-N-acetylhexosaminidase 2750 43.48 +1 3239242..3241035 - 597 209696384 - VSAL_I2990 - putative metallopeptidase 2751 40.89 0 3241116..3242081 - 321 209696385 - VSAL_I2991 - HTH-type transcriptional regulator, LysR-family 2752 43.62 +1 3242186..3243391 + 401 209696386 - VSAL_I2992 - MFS transporter 2753 40.35 0 3243512..3243796 + 94 209696387 - VSAL_I2993 - hypothetical protein 2754 41.12 0 3243867..3244778 - 303 209696388 - VSAL_I2994 - integral membrane protein 2755 42.08 0 3244906..3246426 + 506 209696389 rmuC VSAL_I2995 - DNA recombination protein RumC 2756 41.83 0 3246486..3247250 + 254 209696390 ubiE VSAL_I2996 - ubiquinone/menaquinone biosynthesis methyltransferase 2757 40.87 0 3247263..3247886 + 207 209696391 - VSAL_I2997 - hypothetical protein 2758 42.16 0 3247883..3249514 + 543 209696392 ubiB VSAL_I2998 - probable ubiquinone biosynthesis protein UbiB 2759 37.35 0 3249570..3249818 + 82 209696393 tatA VSAL_I2999 - sec-independent protein translocase protein TatA 2760 41.80 0 3249822..3250199 + 125 209696394 tatB VSAL_I3000 - sec-independent protein translocase protein TatB 2761 40.21 0 3250202..3250957 + 251 209696395 tatC VSAL_I3001 - sec-independent protein translocase protein TatC 2762 35.94 -1 3251158..3252039 + 293 209696396 - VSAL_I3002 - transposase 2763 40.48 0 3253913..3254710 - 265 209696397 - VSAL_I3003 - TatD related DNase 2764 45.43 +1 3254843..3255859 + 338 209696398 hemB VSAL_I3004 - delta-aminolevulinic acid dehydratase 2765 38.15 0 3256157..3256426 + 89 209696399 - VSAL_I3005 - transposase 2766 36.21 -1 3256423..3256770 + 115 209696400 - VSAL_I3006 - transposase 2767 37.86 0 3258780..3259088 + 102 209696401 - VSAL_I3008 - hypothetical protein 2768 42.41 0 3259572..3260684 + 370 209696402 - VSAL_I3009 - transposase 2769 37.02 0 3260889..3261512 + 207 209696403 neuD VSAL_I3010 - putative capsular polysaccharide biosynthesis protein NeuD 2770 38.23 0 3261537..3262577 + 346 209696404 neuB VSAL_I3011 - putative sialic acid synthase NeuB 2771 37.88 0 3262582..3263835 + 417 209696405 neuA VSAL_I3012 - N-acylneuraminate cytidylyltransferase 2772 37.28 0 3263835..3265001 + 388 209696406 neuC VSAL_I3013 - polysialic acid biosynthesis protein P7 2773 35.62 -1 3265006..3266274 + 422 209696407 - VSAL_I3014 - putative exopolysaccharide biosynthesis protein 2774 28.99 -2 3266267..3267163 + 298 209696408 - VSAL_I3015 - hypothetical protein 2775 28.78 -2 3267304..3268269 + 321 209696409 - VSAL_I3016 - lipooligosaccharide sialyltransferase 2776 39.87 0 3269745..3270860 + 371 209696410 rmlB VSAL_I3018 - dTDP-glucose 4,6-dehydratase 2777 40.20 0 3270860..3271747 + 295 209696411 rmlA VSAL_I3019 - glucose-1-phosphate thymidyl transferase 2778 43.65 +1 3271747..3272628 + 293 209696412 rmlD VSAL_I3020 - dTDP-6-deoxy-l-mannose-dehydrogenase 2779 40.00 0 3272633..3273187 + 184 209696413 rmlC VSAL_I3021 - dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase 2780 34.02 -1 3274828..3275706 + 292 209696414 - VSAL_I3024 - putative glycosyl transferase 2781 25.00 -2 3275710..3276993 + 427 209696415 - VSAL_I3025 - membrane protein 2782 29.66 -2 3277004..3277846 + 280 209696416 - VSAL_I3026 - putative glycosyltransferase 2783 29.41 -2 3277843..3278556 + 237 209696417 - VSAL_I3027 - putative glycosyltransferase 2784 30.37 -2 3278556..3279128 + 190 209696418 wbbJ VSAL_I3028 - putative lipopolysaccharide biosynthesis O-acetyl transferase 2785 34.48 -1 3279138..3280274 + 378 209696419 - VSAL_I3029 - putative NAD dependent epimerase/dehydratase 2786 29.54 -2 3280302..3281303 + 333 209696420 - VSAL_I3030 - putative lipopolysaccharide biosynthesis protein 2787 37.38 0 3281316..3282278 + 320 209696421 - VSAL_I3031 - O-antigen biosynthetic gene WbjF 2788 38.98 0 3282275..3282823 + 182 209696422 - VSAL_I3032 - galactosyl transferase, capsular polysaccharide synthesis enzyme 2789 40.93 0 3282949..3284883 + 644 209696423 - VSAL_I3033 - polysaccharide biosynthesis protein, putative epimerase/dehydratase 2790 40.70 0 3285847..3287040 + 397 209696424 - VSAL_I3035 - transposase 2791 44.94 +1 3289804..3290346 + 180 209696425 - VSAL_I3038 - putative outer membrane protein 2792 40.47 0 3290498..3291688 + 396 209696426 - VSAL_I3039 - transposase 2793 33.33 -1 3291945..3292262 + 105 209696427 - VSAL_I3040 - hypothetical protein 2794 38.65 0 3292255..3292950 + 231 209696428 - VSAL_I3041 - putative glycosyltransferase 2795 38.30 0 3294823..3295386 + 187 209696429 - VSAL_I3043 - hypothetical protein 2796 37.18 0 3295673..3296062 + 129 209696430 - VSAL_I3044 - hypothetical protein 2797 34.97 -1 3296055..3296483 + 142 209696431 - VSAL_I3045 - hypothetical protein 2798 38.87 0 3296797..3297645 - 282 209696432 - VSAL_I3046 - transposase 2799 45.06 +1 3298213..3302067 + 1284 209696433 - VSAL_I3047 - putative helicase 2800 43.08 +1 3302199..3303152 + 317 209696434 - VSAL_I3048 - hypothetical protein 2801 43.65 +1 3303337..3304344 + 335 209696435 gne VSAL_I3049 - uridine diphosphate N-acetylgalactosamine 4-epimerase 2802 44.68 +1 3304661..3306211 - 516 209696436 gpmI VSAL_I3050 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2803 31.21 -2 3306387..3306716 + 109 209696437 - VSAL_I3051 - hypothetical protein 2804 36.49 0 3308727..3309074 - 115 209696438 - VSAL_I3054 - transposase 2805 37.78 0 3309071..3309385 - 104 209696439 - VSAL_I3055 - transposase 2806 40.70 0 3310696..3311889 + 397 209696440 - VSAL_I3056 - transposase 2807 41.21 0 3312114..3313472 - 452 209696441 glmU VSAL_I3057 - bifunctional protein [includes: UDP-N-acetylglucosamine pyrophosphorylase (N-acetylglucosamine-1-phosphate uridyltransferase); glucosamine-1-phosphate N-acetyltransferase] 2808 47.52 +2 3313708..3314130 - 140 209696442 atpC VSAL_I3058 - ATP synthase epsilon subunit 2809 44.44 +1 3314149..3315552 - 467 209696443 atpD VSAL_I3059 - ATP synthase beta chain 2810 41.98 0 3315586..3316452 - 288 209696444 atpG VSAL_I3060 - ATP synthase gamma subunit 2811 43.45 +1 3316498..3318039 - 513 209696445 atpA VSAL_I3061 - ATP synthase alpha subunit 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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