IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2697	 36.21	-1	3180276..3180623	-	115	209696331	-	VSAL_I2934	-	transposase
2698	 37.78	0	3180620..3180934	-	104	209696332	-	VSAL_I2935	-	transposase
2699	 44.67	+1	3181638..3182537	-	299	209696333	-	VSAL_I2936	-	putative acyltransferase
2700	 41.61	0	3182875..3183309	-	144	209696334	dtd	VSAL_I2937	-	D-tyrosyl-tRNA(tyr) deacylase
2701	 39.01	0	3183281..3184213	-	310	209696335	rbn	VSAL_I2938	-	tRNA-processing ribonuclease BN
2702	 42.73	+1	3184346..3186175	-	609	209696336	-	VSAL_I2939	-	putative elongation factor Tu, GTP binding domain
2703	 43.40	+1	3186733..3188142	+	469	209696337	glnA	VSAL_I2940	-	glutamine synthetase
2704	 37.78	0	3188568..3188882	+	104	209696338	-	VSAL_I2941	-	transposase
2705	 36.21	-1	3188879..3189226	+	115	209696339	-	VSAL_I2942	-	transposase
2706	 39.72	0	3189298..3190785	+	495	209696340	-	VSAL_I2943	-	transposase
2707	 41.77	0	3190919..3191380	-	153	209696341	asnC	VSAL_I2944	-	HTH-type transcriptional regulator, AsnC-family
2708	 46.10	+2	3191536..3192318	+	260	209696342	-	VSAL_I2945	-	hypothetical protein
2709	 37.79	0	3192315..3192740	-	141	209696343	uspA	VSAL_I2946	-	universal stress protein A
2710	 38.45	0	3192947..3193474	+	175	209696344	ftnA	VSAL_I2947	-	ferritin-1
2711	 37.76	0	3193585..3193923	+	112	209696345	uspB	VSAL_I2948	-	universal stress protein B
2712	 41.21	0	3193951..3195156	+	401	209696346	-	VSAL_I2949	-	putative FAD dependent oxidoreductase
2713	 37.78	0	3197135..3197449	+	104	209696347	-	VSAL_I2951	-	transposase
2714	 35.92	-1	3197446..3197793	+	115	209696348	-	VSAL_I2952	-	transposase
2715	 39.65	0	3197865..3199352	+	495	209696349	-	VSAL_I2953	-	transposase
2716	 39.63	0	3200094..3200681	-	195	209696350	-	VSAL_I2954	-	hypothetical protein
2717	 43.04	+1	3200681..3201700	-	339	209696351	-	VSAL_I2955	-	putative lipoprotein
2718	 45.75	+2	3201855..3202490	+	211	209696352	eda	VSAL_I2956	-	KHG/KDPG aldolase
2719	 36.21	-1	3204396..3204743	-	115	209696353	-	VSAL_I2959	-	transposase
2720	 37.78	0	3204740..3205054	-	104	209696354	-	VSAL_I2960	-	transposase
2721	 42.07	0	3205351..3205785	+	144	209696355	ibpA	VSAL_I2961	-	small heat shock protein
2722	 39.14	0	3205841..3207166	-	441	209696356	-	VSAL_I2962	-	transposase
2723	 42.87	+1	3207539..3208786	-	415	209696357	avtA	VSAL_I2963	-	valine--pyruvate aminotransferase (alanine--valine transaminase)
2724	 44.91	+1	3209005..3209937	+	310	209696358	glyQ	VSAL_I2964	-	glycine-tRNA synthetase, alpha subunit
2725	 44.22	+1	3209940..3212006	+	688	209696359	glyS	VSAL_I2965	-	glycine-tRNA synthetase, beta subunit
2726	 42.22	0	3212151..3213815	+	554	209696360	malS	VSAL_I2966	-	alpha-amylase precursor
2727	 38.70	0	3213954..3214214	+	86	209696361	-	VSAL_I2967	-	hypothetical protein
2728	 44.05	+1	3214247..3214498	-	83	209696362	-	VSAL_I2968	-	SirA-like protein
2729	 40.70	0	3214660..3215853	+	397	209696363	-	VSAL_I2969	-	transposase
2730	 36.46	0	3216114..3216305	+	63	209696364	-	VSAL_I2970	-	hypothetical protein
2731	 39.60	0	3216466..3217407	+	313	209696365	-	VSAL_I2971	-	HTH-type transcriptional regulator, LysR family
2732	 44.34	+1	3217530..3218510	-	326	209696366	-	VSAL_I2972	-	putative zinc-binding alcohol dehydrogenase
2733	 45.02	+1	3219285..3220448	-	387	209696367	fadA	VSAL_I2973	-	fatty oxidation complex beta subunit, 3-ketoacyl-CoA thiolase
2734	 43.42	+1	3220462..3222642	-	726	209696368	fadB	VSAL_I2974	-	fatty oxidation complex alpha subunit, enoyl-CoA hydratase
2735	 41.79	0	3222885..3223499	+	204	209696369	-	VSAL_I2975	-	hypothetical protein
2736	 41.63	0	3223557..3225014	+	485	209696370	trkH	VSAL_I2976	-	Trk system potassium uptake protein TrkH
2737	 38.67	0	3225042..3225566	+	174	209696371	hemG	VSAL_I2977	-	protoporphyrinogen oxidase
2738	 42.98	+1	3225765..3226106	-	113	209696372	-	VSAL_I2978	-	hypothetical protein
2739	 37.58	0	3226206..3228962	+	918	209696373	-	VSAL_I2979	-	Zn-dependent peptidase
2740	 35.90	-1	3229064..3229258	+	64	209696374	-	VSAL_I2980	-	hypothetical protein
2741	 40.16	0	3229350..3229730	-	126	209696375	-	VSAL_I2981	-	CrcB-like protein
2742	 37.35	0	3229912..3230334	+	140	209696376	-	VSAL_I2982	-	hypothetical protein
2743	 43.04	+1	3230776..3232722	+	648	209696377	thiC	VSAL_I2983	-	thiamine biosynthesis protein ThiC
2744	 40.68	0	3232795..3233475	+	226	209696378	thiE	VSAL_I2984	-	thiamine-phosphate pyrophosphorylase
2745	 42.17	0	3233468..3234316	+	282	209696379	thiF	VSAL_I2985	-	thiamine biosynthesis adenylyltransferase ThiF
2746	 39.44	0	3234309..3234521	+	70	209696380	thiS	VSAL_I2986	-	thiamine biosynthesis protein ThiS
2747	 46.30	+2	3234523..3235293	+	256	209696381	thiG	VSAL_I2987	-	thiamine biosynthesis protein ThiG
2748	 42.50	0	3235316..3236428	+	370	209696382	thiH	VSAL_I2988	-	thiamine biosynthesis protein ThiH
2749	 41.34	0	3236553..3238976	-	807	209696383	-	VSAL_I2989	-	putative beta-N-acetylhexosaminidase
2750	 43.48	+1	3239242..3241035	-	597	209696384	-	VSAL_I2990	-	putative metallopeptidase
2751	 40.89	0	3241116..3242081	-	321	209696385	-	VSAL_I2991	-	HTH-type transcriptional regulator, LysR-family
2752	 43.62	+1	3242186..3243391	+	401	209696386	-	VSAL_I2992	-	MFS transporter
2753	 40.35	0	3243512..3243796	+	94	209696387	-	VSAL_I2993	-	hypothetical protein
2754	 41.12	0	3243867..3244778	-	303	209696388	-	VSAL_I2994	-	integral membrane protein
2755	 42.08	0	3244906..3246426	+	506	209696389	rmuC	VSAL_I2995	-	DNA recombination protein RumC
2756	 41.83	0	3246486..3247250	+	254	209696390	ubiE	VSAL_I2996	-	ubiquinone/menaquinone biosynthesis methyltransferase
2757	 40.87	0	3247263..3247886	+	207	209696391	-	VSAL_I2997	-	hypothetical protein
2758	 42.16	0	3247883..3249514	+	543	209696392	ubiB	VSAL_I2998	-	probable ubiquinone biosynthesis protein UbiB
2759	 37.35	0	3249570..3249818	+	82	209696393	tatA	VSAL_I2999	-	sec-independent protein translocase protein TatA
2760	 41.80	0	3249822..3250199	+	125	209696394	tatB	VSAL_I3000	-	sec-independent protein translocase protein TatB
2761	 40.21	0	3250202..3250957	+	251	209696395	tatC	VSAL_I3001	-	sec-independent protein translocase protein TatC
2762	 35.94	-1	3251158..3252039	+	293	209696396	-	VSAL_I3002	-	transposase
2763	 40.48	0	3253913..3254710	-	265	209696397	-	VSAL_I3003	-	TatD related DNase
2764	 45.43	+1	3254843..3255859	+	338	209696398	hemB	VSAL_I3004	-	delta-aminolevulinic acid dehydratase
2765	 38.15	0	3256157..3256426	+	89	209696399	-	VSAL_I3005	-	transposase
2766	 36.21	-1	3256423..3256770	+	115	209696400	-	VSAL_I3006	-	transposase
2767	 37.86	0	3258780..3259088	+	102	209696401	-	VSAL_I3008	-	hypothetical protein
2768	 42.41	0	3259572..3260684	+	370	209696402	-	VSAL_I3009	-	transposase
2769	 37.02	0	3260889..3261512	+	207	209696403	neuD	VSAL_I3010	-	putative capsular polysaccharide biosynthesis protein NeuD
2770	 38.23	0	3261537..3262577	+	346	209696404	neuB	VSAL_I3011	-	putative sialic acid synthase NeuB
2771	 37.88	0	3262582..3263835	+	417	209696405	neuA	VSAL_I3012	-	N-acylneuraminate cytidylyltransferase
2772	 37.28	0	3263835..3265001	+	388	209696406	neuC	VSAL_I3013	-	polysialic acid biosynthesis protein P7
2773	 35.62	-1	3265006..3266274	+	422	209696407	-	VSAL_I3014	-	putative exopolysaccharide biosynthesis protein
2774	 28.99	-2	3266267..3267163	+	298	209696408	-	VSAL_I3015	-	hypothetical protein
2775	 28.78	-2	3267304..3268269	+	321	209696409	-	VSAL_I3016	-	lipooligosaccharide sialyltransferase
2776	 39.87	0	3269745..3270860	+	371	209696410	rmlB	VSAL_I3018	-	dTDP-glucose 4,6-dehydratase
2777	 40.20	0	3270860..3271747	+	295	209696411	rmlA	VSAL_I3019	-	glucose-1-phosphate thymidyl transferase
2778	 43.65	+1	3271747..3272628	+	293	209696412	rmlD	VSAL_I3020	-	dTDP-6-deoxy-l-mannose-dehydrogenase
2779	 40.00	0	3272633..3273187	+	184	209696413	rmlC	VSAL_I3021	-	dTDP-6-deoxy-D-xylo-4-hexulose-3,5-epimerase
2780	 34.02	-1	3274828..3275706	+	292	209696414	-	VSAL_I3024	-	putative glycosyl transferase
2781	 25.00	-2	3275710..3276993	+	427	209696415	-	VSAL_I3025	-	membrane protein
2782	 29.66	-2	3277004..3277846	+	280	209696416	-	VSAL_I3026	-	putative glycosyltransferase
2783	 29.41	-2	3277843..3278556	+	237	209696417	-	VSAL_I3027	-	putative glycosyltransferase
2784	 30.37	-2	3278556..3279128	+	190	209696418	wbbJ	VSAL_I3028	-	putative lipopolysaccharide biosynthesis O-acetyl transferase
2785	 34.48	-1	3279138..3280274	+	378	209696419	-	VSAL_I3029	-	putative NAD dependent epimerase/dehydratase
2786	 29.54	-2	3280302..3281303	+	333	209696420	-	VSAL_I3030	-	putative lipopolysaccharide biosynthesis protein
2787	 37.38	0	3281316..3282278	+	320	209696421	-	VSAL_I3031	-	O-antigen biosynthetic gene WbjF
2788	 38.98	0	3282275..3282823	+	182	209696422	-	VSAL_I3032	-	galactosyl transferase, capsular polysaccharide synthesis enzyme
2789	 40.93	0	3282949..3284883	+	644	209696423	-	VSAL_I3033	-	polysaccharide biosynthesis protein, putative epimerase/dehydratase
2790	 40.70	0	3285847..3287040	+	397	209696424	-	VSAL_I3035	-	transposase
2791	 44.94	+1	3289804..3290346	+	180	209696425	-	VSAL_I3038	-	putative outer membrane protein
2792	 40.47	0	3290498..3291688	+	396	209696426	-	VSAL_I3039	-	transposase
2793	 33.33	-1	3291945..3292262	+	105	209696427	-	VSAL_I3040	-	hypothetical protein
2794	 38.65	0	3292255..3292950	+	231	209696428	-	VSAL_I3041	-	putative glycosyltransferase
2795	 38.30	0	3294823..3295386	+	187	209696429	-	VSAL_I3043	-	hypothetical protein
2796	 37.18	0	3295673..3296062	+	129	209696430	-	VSAL_I3044	-	hypothetical protein
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.