IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
221	 38.42	0	290265..291149	+	294	209693855	rmlA	VSAL_I0244	-	glucose-1-phosphate thymidylyltransferase RmlA
222	 39.43	0	292059..292616	+	185	209693856	rmlC	VSAL_I0246	-	dTDP-4-dehydrorhamnose 3,5-epimerase
223	 35.48	-1	292617..293456	+	279	209693857	wavT	VSAL_I0247	-	putative glycosyl transferase
224	 34.03	-1	294239..295381	+	380	209693858	rffA	VSAL_I0249	-	lipopolysaccharide biosynthesis protein RffA
225	 33.07	-2	295378..296499	+	373	209693859	-	VSAL_I0250	-	hypothetical protein
226	 37.87	0	296617..297807	+	396	209693860	-	VSAL_I0251	-	capsular polysaccharide biosynthesis protein
227	 40.75	0	297831..298976	+	381	209693861	-	VSAL_I0252	-	DegT/DnrJ/EryC1/StrS aminotransferase
228	 39.75	0	299014..300198	+	394	209693862	-	VSAL_I0253	-	UDP-N-acetylglucosamine 2-epimerase
229	 40.13	0	300206..301279	+	357	209693863	-	VSAL_I0254	-	N-acetylneuraminic acid synthase
230	 39.38	0	301272..301916	+	214	209693864	-	VSAL_I0255	-	putative acetyltransferase
231	 37.96	0	301932..302990	+	352	209693865	-	VSAL_I0256	-	nucleotidyl transferase
232	 34.78	-1	303682..304785	+	367	209693866	-	VSAL_I0258	-	putative outer membrane protein
233	 39.60	0	305038..305994	+	318	209693867	-	VSAL_I0259	-	transposase
234	 35.03	-1	306147..307148	-	333	209693868	-	VSAL_I0260	-	hypothetical protein
235	 40.06	0	307195..308457	-	420	209693869	-	VSAL_I0261	-	3-deoxy-D-manno-octulosonic-acid transferase
236	 41.83	0	308451..309521	-	356	209693870	-	VSAL_I0262	-	ADP-heptose-LPS heptosyltransferase II
237	 39.77	0	309518..310744	-	408	209693871	-	VSAL_I0263	-	O-antigen ligase WaaL
238	 42.89	+1	310915..311856	-	313	209693872	hldD	VSAL_I0264	-	ADP-L-glycero-D-manno-heptose-6-epimerase
239	 43.78	+1	312237..313691	+	484	209693873	-	VSAL_I0265	-	putative metallo-beta-lactamase
240	 35.92	-1	313868..314215	+	115	209693874	-	VSAL_I0266	-	hypothetical protein
241	 37.98	0	314332..314976	+	214	209693875	-	VSAL_I0267	-	HTH-type transcriptional regulator, tetR-family
242	 40.89	0	315135..316286	+	383	209693876	-	VSAL_I0268	-	hypothetical protein
243	 42.64	+1	316286..317005	+	239	209693877	-	VSAL_I0269	-	hypothetical protein
244	 36.00	-1	317174..317698	+	174	209693878	-	VSAL_I0270	-	putative lipoprotein
245	 32.91	-2	317676..318617	+	313	209693879	-	VSAL_I0271	-	hypothetical protein
246	 40.22	0	318954..321161	-	735	209693880	-	VSAL_I0272	-	putative outer membrane protein
247	 36.60	0	321164..321928	-	254	209693881	-	VSAL_I0273	-	exported protein
248	 37.24	0	321935..322600	-	221	209693882	-	VSAL_I0274	-	putative lipoprotein
249	 49.22	+2	322685..322942	-	85	209693883	-	VSAL_I0275	-	membrane protein
250	 42.84	+1	323139..324506	+	455	209693884	-	VSAL_I0276	-	hypothetical protein
251	 41.72	0	324575..327184	+	869	209693885	-	VSAL_I0277	-	periplasmic protein involved in polysaccharide export
252	 42.64	+1	327417..328394	+	325	209693886	wzz	VSAL_I0278	-	O-antigen length determinant protein
253	 37.78	0	328784..329098	+	104	209693887	-	VSAL_I0279	-	transposase
254	 36.21	-1	329095..329442	+	115	209693888	-	VSAL_I0280	-	transposase
255	 32.52	-2	331420..331788	-	122	209693889	-	VSAL_I0282	-	hypothetical protein
256	 46.56	+2	332081..332851	-	256	209693890	tpiA	VSAL_I0283	-	triosephosphate isomerase
257	 40.17	0	333134..333484	+	116	209693891	hpcD	VSAL_I0284	-	5-carboxymethyl-2-hydroxymuconate isomerase
258	 35.94	-1	333689..334570	+	293	209693892	-	VSAL_I0286	-	transposase
259	 46.03	+2	335317..336324	-	335	209693893	glpX	VSAL_I0287	-	fructose-1,6-bisphosphatase class II GlpX
260	 38.68	0	336692..336934	+	80	209693894	-	VSAL_I0288	-	hypothetical protein
261	 37.78	0	337220..337534	+	104	209693895	-	VSAL_I0289	-	transposase
262	 35.92	-1	337531..337878	+	115	209693896	-	VSAL_I0290	-	transposase
263	 39.65	0	337950..339437	+	495	209693897	-	VSAL_I0291	-	transposase
264	 41.16	0	339695..340192	-	165	209693898	rraA	VSAL_I0292	-	regulator of ribonuclease activity A
265	 43.78	+1	340286..341194	-	302	209693899	menA	VSAL_I0293	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
266	 42.99	+1	341282..342151	-	289	209693900	cfxP	VSAL_I0294	-	phosphoribulokinase
267	 40.33	0	342253..342495	-	80	209693901	-	VSAL_I0295	-	hypothetical protein
268	 41.90	0	342530..343498	-	322	209693902	-	VSAL_I0296	-	putative hydrolase
269	 37.27	0	343518..344000	-	160	209693903	-	VSAL_I0297	-	hypothetical protein
270	 41.77	0	343984..345915	-	643	209693904	-	VSAL_I0298	-	ABC transporter ATP-binding protein
271	 39.62	0	346064..346636	+	190	209693905	kefG	VSAL_I0299	-	glutathione-regulated potassium-efflux system ancillary protein KefG
272	 42.94	+1	346636..348426	+	596	209693906	kefB	VSAL_I0300	-	glutathione-regulated potassium-efflux system protein KefB (K(+)/H(+) antiporter)
273	 41.54	0	348447..348641	+	64	209693907	-	VSAL_I0301	-	hypothetical protein
274	 45.69	+2	348699..349289	+	196	209693908	slyD	VSAL_I0302	-	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD
275	 36.44	0	349477..349701	-	74	209693909	-	VSAL_I0303	-	hypothetical protein
276	 40.51	0	349698..350714	-	338	209693910	-	VSAL_I0304	-	putative lipoprotein
277	 40.13	0	350844..351638	+	264	209693911	fkpA	VSAL_I0305	-	FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor
278	 37.25	0	351827..352540	+	237	209693912	-	VSAL_I0306	-	putative DNA-binding protein
279	 40.46	0	352537..352929	+	130	209693913	dsrE	VSAL_I0307	-	intracellular sulfur oxidation protein DsrE
280	 35.01	-1	352959..353315	+	118	209693914	dsrF	VSAL_I0308	-	intracellular sulfur oxidation protein DsrF
281	 31.25	-2	353325..353612	+	95	209693915	-	VSAL_I0309	-	hypothetical protein
282	 45.60	+1	353778..354152	+	124	209693916	rpsL	VSAL_I0310	-	30S ribosomal protein S12
283	 43.95	+1	354263..354733	+	156	209693917	rpsG	VSAL_I0311	-	30S ribosomal protein S7
284	 43.58	+1	354867..356954	+	695	209693918	fusA	VSAL_I0312	-	elongation factor G
285	 44.05	+1	357073..358257	+	394	209693919	tuf	VSAL_I0313	-	elongation factor Tu
286	 38.14	0	359387..359698	+	103	209693920	-	VSAL_I0315	-	transposase
287	 36.21	-1	359695..360042	+	115	209693921	-	VSAL_I0316	-	transposase
288	 35.94	-1	360130..361011	-	293	209693922	-	VSAL_I0317	-	transposase
289	 44.23	+1	363557..363868	+	103	209693923	rpsJ	VSAL_I0319	-	30S ribosomal subunit protein S10
290	 44.60	+1	363881..364510	+	209	209693924	rplC	VSAL_I0320	-	50S ribosomal protein L3
291	 44.61	+1	364528..365130	+	200	209693925	rplD	VSAL_I0321	-	50S ribosomal protein L4
292	 41.25	0	365127..365429	+	100	209693926	rplW	VSAL_I0322	-	50S ribosomal protein L23
293	 46.42	+2	365445..366269	+	274	209693927	rplB	VSAL_I0323	-	50S ribosomal protein L2
294	 45.88	+2	366289..366567	+	92	209693928	rpsS	VSAL_I0324	-	30S ribosomal protein S19
295	 42.94	+1	366578..366910	+	110	209693929	rplV	VSAL_I0325	-	50S ribosomal subunit protein L22
296	 47.78	+2	366930..367628	+	232	209693930	rpsC	VSAL_I0326	-	30S ribosomal subunit protein S3
297	 47.93	+2	367640..368050	+	136	209693931	rplP	VSAL_I0327	-	50S ribosomal subunit protein L16
298	 41.67	0	368050..368241	+	63	209693932	rpmC	VSAL_I0328	-	50S ribosomal protein L29
299	 40.78	0	368241..368495	+	84	209693933	rpsQ	VSAL_I0329	-	30S ribosomal protein S17
300	 45.97	+2	368658..369029	+	123	209693934	rplN	VSAL_I0330	-	50S ribosomal protein L14
301	 39.62	0	369040..369357	+	105	209693935	rplX	VSAL_I0331	-	50S ribosomal protein L24
302	 45.37	+1	369385..369924	+	179	209693936	rplE	VSAL_I0332	-	50S ribosomal protein L5
303	 42.81	+1	369942..370247	+	101	209693937	rpsN	VSAL_I0333	-	30S ribosomal protein S14
304	 43.51	+1	370277..370669	+	130	209693938	rpsH	VSAL_I0334	-	30S ribosomal protein S8
305	 43.63	+1	370682..371215	+	177	209693939	rplF	VSAL_I0335	-	50E ribosomal protein L6
306	 48.31	+2	371225..371578	+	117	209693940	rplR	VSAL_I0336	-	50S ribosomal protein L18
307	 44.31	+1	371593..372093	+	166	209693941	rpsE	VSAL_I0337	-	30S ribosomal protein S5
308	 42.78	+1	372099..372278	+	59	209693942	rpmD	VSAL_I0338	-	50S ribosomal protein L30
309	 45.06	+1	372285..372719	+	144	209693943	rplO	VSAL_I0339	-	50S ribosomal protein L15
310	 43.09	+1	372740..374071	+	443	209693944	secY	VSAL_I0340	-	preprotein translocase SecY subunit
311	 46.78	+2	374362..374718	+	118	209693945	rpsM	VSAL_I0341	-	30S ribosomal protein S13
312	 47.69	+2	374740..375129	+	129	209693946	rpsK	VSAL_I0342	-	30S ribosomal protein S11
313	 42.67	+1	375161..375781	+	206	209693947	rpsD	VSAL_I0343	-	30S ribosomal protein S4
314	 44.24	+1	375805..376794	+	329	209693948	rpoA	VSAL_I0344	-	RNA polymerase alpha-subunit
315	 46.19	+2	376831..377211	+	126	209693949	rplQ	VSAL_I0345	-	50S ribosomal protein L17
316	 38.28	0	377275..378285	-	336	209693950	fbp	VSAL_I0346	-	fructose-1,6-bisphosphatase
317	 41.78	0	378499..379860	+	453	209693951	mpl	VSAL_I0347	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelat ligase
318	 41.75	0	379862..380491	+	209	209693952	-	VSAL_I0348	-	probable aromatic acid decarboxylase
319	 38.94	0	380696..381712	+	338	209693953	tbpA	VSAL_I0349	-	thiamine-binding periplasmic protein precursor
320	 38.82	0	381775..383397	+	540	209693954	thiP	VSAL_I0350	-	thiamine transport system permease protein ThiP
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.