version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2639 35.94 -1 3114297..3115178 + 293 209696273 - VSAL_I2874 - transposase 2640 31.82 -2 3115312..3116235 + 307 209696274 coaA VSAL_I2875 - pantothenate kinase 2641 38.65 0 3116236..3117195 - 319 209696275 birA VSAL_I2876 - bifunctional protein BirA, biotin operon repressor and biotin-[acetyl-CoA carboxylase] synthetase 2642 33.43 -1 3117192..3118232 - 346 209696276 murB VSAL_I2877 - UDP-N-acetylenolpyruvoylglucosamine reductase 2643 29.60 -2 3118304..3118732 + 142 209696277 - VSAL_I2878 - hypothetical protein 2644 35.33 -1 3118812..3120164 + 450 209696278 pssA VSAL_I2879 - CDP-diacylglycerol--serine O-phosphatidyltransferase 2645 37.78 0 3120327..3120641 + 104 209696279 - VSAL_I2880 - transposase 2646 36.21 -1 3120638..3120985 + 115 209696280 - VSAL_I2881 - transposase 2647 39.78 0 3121057..3122544 + 495 209696281 - VSAL_I2882 - transposase 2648 36.21 -1 3128367..3128852 + 161 209696282 - VSAL_I2883 - putative RNA binding protein 2649 34.46 -1 3128806..3129603 - 265 209696283 murI VSAL_I2884 - glutamate racemase 2650 37.80 0 3129664..3130335 - 223 209696284 - VSAL_I2885 - hypothetical protein 2651 38.02 0 3130386..3132242 - 618 209696285 - VSAL_I2886 - putative outer membrane associated TonB dependent receptor 2652 37.49 0 3132667..3133773 + 368 209696286 trmA VSAL_I2887 - tRNA (uracil-5)-methyltransferase 2653 37.07 0 3133846..3134220 - 124 209696287 - VSAL_I2888 - inner membrane protein 2654 41.06 0 3134265..3134963 - 232 209696288 - VSAL_I2889 - HTH-type transcriptional regulator, TetR-family 2655 40.47 0 3135177..3136592 + 471 209696289 sthA VSAL_I2890 - soluble pyridine nucleotide transhydrogenase 2656 39.26 0 3136681..3138012 - 443 209696290 vcmD VSAL_I2891 - multidrug efflux pump 2657 41.33 0 3138095..3138907 - 270 209696291 - VSAL_I2892 - hypothetical protein 2658 42.95 +1 3138998..3139621 - 207 209696292 lexA VSAL_I2893 - LexA repressor 2659 40.72 0 3139863..3142286 + 807 209696293 plsB VSAL_I2894 - glycerol-3-phosphate acyltransferase 2660 40.91 0 3142377..3143234 - 285 209696294 ubiA VSAL_I2895 - 4-hydroxybenzoate octaprenyltransferase 2661 39.97 0 3143231..3143803 - 190 209696295 ubiC VSAL_I2896 - chorismate--pyruvate lyase 2662 37.71 0 3143925..3144335 + 136 209696296 - VSAL_I2897 - putative flagellar basal body-associated protein FliL 2663 39.17 0 3144389..3145228 - 279 209696297 - VSAL_I2898 - integral membrane protein 2664 40.12 0 3145236..3145559 - 107 209696298 glpE VSAL_I2899 - thiosulfate sulfurtransferase 2665 40.19 0 3145988..3146848 - 286 209696299 rpoH VSAL_I2900 - RNA polymerase sigma-32 factor 2666 39.10 0 3147076..3148029 - 317 209696300 ftsX VSAL_I2901 - cell division protein FtsX 2667 39.61 0 3148022..3148690 - 222 209696301 ftsE VSAL_I2902 - cell division ATP-binding protein FtsE 2668 39.98 0 3148694..3149926 - 410 209696302 ftsY VSAL_I2903 - cell division protein FtsY 2669 39.41 0 3149997..3150605 + 202 209696303 - VSAL_I2904 - hypothetical protein 2670 38.10 0 3150606..3150878 + 90 209696304 - VSAL_I2905 - hypothetical protein 2671 36.21 -1 3151679..3151921 - 80 209696305 - VSAL_I2907 - hypothetical protein 2672 33.61 -1 3152793..3153158 - 121 209696306 - VSAL_I2908 - hypothetical protein 2673 36.94 0 3153432..3153764 + 110 209696307 - VSAL_I2909 - hypothetical protein 2674 42.60 +1 3153779..3155860 + 693 209696308 recG VSAL_I2910 - ATP-dependent DNA helicase RecG 2675 41.88 0 3155939..3156523 - 194 209696309 - VSAL_I2911 - hypothetical protein 2676 41.27 0 3156642..3157460 - 272 209696310 cysQ VSAL_I2912 - protein CysQ 2677 41.12 0 3157466..3158017 - 183 209696311 nudE VSAL_I2913 - ADP compounds hydrolase NudE 2678 43.44 +1 3158027..3158788 - 253 209696312 exeN VSAL_I2914 - general secretion pathway protein N 2679 40.65 0 3158785..3159276 - 163 209696313 epsM VSAL_I2915 - general secretion pathway protein M 2680 40.78 0 3159276..3160511 - 411 209696314 epsL VSAL_I2916 - general secretion pathway protein L 2681 40.69 0 3160504..3161523 - 339 209696315 epsK VSAL_I2917 - general secretion pathway protein K 2682 39.97 0 3161538..3162185 - 215 209696316 epsJ VSAL_I2918 - general secretion pathway protein J 2683 39.68 0 3162190..3162567 - 125 209696317 epsI VSAL_I2919 - general secretion pathway protein I 2684 42.55 0 3162557..3163153 - 198 209696318 epsH VSAL_I2920 - general secretion pathway protein H precursor 2685 40.89 0 3163185..3163634 - 149 209696319 epsG VSAL_I2921 - general secretion pathway protein G 2686 41.05 0 3163698..3164915 - 405 209696320 epsF VSAL_I2922 - general secretion pathway protein F 2687 42.53 0 3164916..3166415 - 499 209696321 epsE VSAL_I2923 - general secretion pathway protein E 2688 41.67 0 3166415..3168442 - 675 209696322 epsD VSAL_I2924 - general secretion pathway protein D 2689 39.36 0 3168486..3169397 - 303 209696323 epsC VSAL_I2925 - general secretion pathway protein C 2690 42.54 0 3169675..3170076 + 133 209696324 hslR VSAL_I2926 - heat shock protein 15 2691 40.98 0 3170167..3171042 + 291 209696325 hslO VSAL_I2927 - 33 kda chaperonin (heat shock protein 33) 2692 41.02 0 3171402..3173027 + 541 209696326 pckA VSAL_I2928 - phosphoenolpyruvate carboxykinase 2693 37.62 0 3173232..3175214 + 660 209696327 - VSAL_I2929 - hypothetical protein 2694 37.18 0 3175273..3176493 - 406 209696328 - VSAL_I2930 - putative signaling protein 2695 39.01 0 3176743..3177711 + 322 209696329 - VSAL_I2931 - lysophospholipase L2 LypA 2696 37.09 0 3177835..3178632 + 265 209696330 - VSAL_I2932 - hypothetical protein 2697 36.21 -1 3180276..3180623 - 115 209696331 - VSAL_I2934 - transposase 2698 37.78 0 3180620..3180934 - 104 209696332 - VSAL_I2935 - transposase 2699 44.67 +1 3181638..3182537 - 299 209696333 - VSAL_I2936 - putative acyltransferase 2700 41.61 0 3182875..3183309 - 144 209696334 dtd VSAL_I2937 - D-tyrosyl-tRNA(tyr) deacylase 2701 39.01 0 3183281..3184213 - 310 209696335 rbn VSAL_I2938 - tRNA-processing ribonuclease BN 2702 42.73 +1 3184346..3186175 - 609 209696336 - VSAL_I2939 - putative elongation factor Tu, GTP binding domain 2703 43.40 +1 3186733..3188142 + 469 209696337 glnA VSAL_I2940 - glutamine synthetase 2704 37.78 0 3188568..3188882 + 104 209696338 - VSAL_I2941 - transposase 2705 36.21 -1 3188879..3189226 + 115 209696339 - VSAL_I2942 - transposase 2706 39.72 0 3189298..3190785 + 495 209696340 - VSAL_I2943 - transposase 2707 41.77 0 3190919..3191380 - 153 209696341 asnC VSAL_I2944 - HTH-type transcriptional regulator, AsnC-family 2708 46.10 +2 3191536..3192318 + 260 209696342 - VSAL_I2945 - hypothetical protein 2709 37.79 0 3192315..3192740 - 141 209696343 uspA VSAL_I2946 - universal stress protein A 2710 38.45 0 3192947..3193474 + 175 209696344 ftnA VSAL_I2947 - ferritin-1 2711 37.76 0 3193585..3193923 + 112 209696345 uspB VSAL_I2948 - universal stress protein B 2712 41.21 0 3193951..3195156 + 401 209696346 - VSAL_I2949 - putative FAD dependent oxidoreductase 2713 37.78 0 3197135..3197449 + 104 209696347 - VSAL_I2951 - transposase 2714 35.92 -1 3197446..3197793 + 115 209696348 - VSAL_I2952 - transposase 2715 39.65 0 3197865..3199352 + 495 209696349 - VSAL_I2953 - transposase 2716 39.63 0 3200094..3200681 - 195 209696350 - VSAL_I2954 - hypothetical protein 2717 43.04 +1 3200681..3201700 - 339 209696351 - VSAL_I2955 - putative lipoprotein 2718 45.75 +2 3201855..3202490 + 211 209696352 eda VSAL_I2956 - KHG/KDPG aldolase 2719 36.21 -1 3204396..3204743 - 115 209696353 - VSAL_I2959 - transposase 2720 37.78 0 3204740..3205054 - 104 209696354 - VSAL_I2960 - transposase 2721 42.07 0 3205351..3205785 + 144 209696355 ibpA VSAL_I2961 - small heat shock protein 2722 39.14 0 3205841..3207166 - 441 209696356 - VSAL_I2962 - transposase 2723 42.87 +1 3207539..3208786 - 415 209696357 avtA VSAL_I2963 - valine--pyruvate aminotransferase (alanine--valine transaminase) 2724 44.91 +1 3209005..3209937 + 310 209696358 glyQ VSAL_I2964 - glycine-tRNA synthetase, alpha subunit 2725 44.22 +1 3209940..3212006 + 688 209696359 glyS VSAL_I2965 - glycine-tRNA synthetase, beta subunit 2726 42.22 0 3212151..3213815 + 554 209696360 malS VSAL_I2966 - alpha-amylase precursor 2727 38.70 0 3213954..3214214 + 86 209696361 - VSAL_I2967 - hypothetical protein 2728 44.05 +1 3214247..3214498 - 83 209696362 - VSAL_I2968 - SirA-like protein 2729 40.70 0 3214660..3215853 + 397 209696363 - VSAL_I2969 - transposase 2730 36.46 0 3216114..3216305 + 63 209696364 - VSAL_I2970 - hypothetical protein 2731 39.60 0 3216466..3217407 + 313 209696365 - VSAL_I2971 - HTH-type transcriptional regulator, LysR family 2732 44.34 +1 3217530..3218510 - 326 209696366 - VSAL_I2972 - putative zinc-binding alcohol dehydrogenase 2733 45.02 +1 3219285..3220448 - 387 209696367 fadA VSAL_I2973 - fatty oxidation complex beta subunit, 3-ketoacyl-CoA thiolase 2734 43.42 +1 3220462..3222642 - 726 209696368 fadB VSAL_I2974 - fatty oxidation complex alpha subunit, enoyl-CoA hydratase 2735 41.79 0 3222885..3223499 + 204 209696369 - VSAL_I2975 - hypothetical protein 2736 41.63 0 3223557..3225014 + 485 209696370 trkH VSAL_I2976 - Trk system potassium uptake protein TrkH 2737 38.67 0 3225042..3225566 + 174 209696371 hemG VSAL_I2977 - protoporphyrinogen oxidase 2738 42.98 +1 3225765..3226106 - 113 209696372 - VSAL_I2978 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0