IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2626	 28.55	-2	3095102..3095749	-	215	209696260	csgD	VSAL_I2858	-	probable CsgAB operon transcriptional regulatory protein
2627	 34.04	-1	3096149..3096715	-	188	209696261	-	VSAL_I2860	-	transposase
2628	 35.70	-1	3096733..3097155	-	140	209696262	-	VSAL_I2861	-	transposase
2629	 35.94	-1	3097957..3098838	-	293	209696263	-	VSAL_I2863	-	transposase
2630	 35.13	-1	3099392..3100336	+	314	209696264	csgA	VSAL_I2864	-	curlin associated precursor, CsgA like
2631	 43.25	+1	3100411..3104616	-	1401	209696265	rpoC	VSAL_I2865	-	DNA-directed RNA polymerase beta' chain
2632	 42.05	0	3104688..3108716	-	1342	209696266	rpoB	VSAL_I2866	-	DNA-directed RNA polymerase, beta-subunit
2633	 45.08	+1	3108948..3109313	-	121	209696267	rplL	VSAL_I2867	-	50S ribosomal subunit protein L7/L12
2634	 44.44	+1	3109369..3109863	-	164	209696268	rplJ	VSAL_I2868	-	50S ribosomal subunit protein L10
2635	 42.13	0	3110109..3110813	-	234	209696269	rplA	VSAL_I2869	-	50S ribosomal protein L1
2636	 44.52	+1	3110818..3111246	-	142	209696270	rplK	VSAL_I2870	-	50S ribosomal protein L11
2637	 40.66	0	3111366..3111911	-	181	209696271	nusG	VSAL_I2871	-	transcription antitermination protein NusG
2638	 39.15	0	3111924..3112301	-	125	209696272	secE	VSAL_I2872b	-	preprotein translocase sece subunit
2639	 35.94	-1	3114297..3115178	+	293	209696273	-	VSAL_I2874	-	transposase
2640	 31.82	-2	3115312..3116235	+	307	209696274	coaA	VSAL_I2875	-	pantothenate kinase
2641	 38.65	0	3116236..3117195	-	319	209696275	birA	VSAL_I2876	-	bifunctional protein BirA, biotin operon repressor and biotin-[acetyl-CoA carboxylase] synthetase
2642	 33.43	-1	3117192..3118232	-	346	209696276	murB	VSAL_I2877	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2643	 29.60	-2	3118304..3118732	+	142	209696277	-	VSAL_I2878	-	hypothetical protein
2644	 35.33	-1	3118812..3120164	+	450	209696278	pssA	VSAL_I2879	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
2645	 37.78	0	3120327..3120641	+	104	209696279	-	VSAL_I2880	-	transposase
2646	 36.21	-1	3120638..3120985	+	115	209696280	-	VSAL_I2881	-	transposase
2647	 39.78	0	3121057..3122544	+	495	209696281	-	VSAL_I2882	-	transposase
2648	 36.21	-1	3128367..3128852	+	161	209696282	-	VSAL_I2883	-	putative RNA binding protein
2649	 34.46	-1	3128806..3129603	-	265	209696283	murI	VSAL_I2884	-	glutamate racemase
2650	 37.80	0	3129664..3130335	-	223	209696284	-	VSAL_I2885	-	hypothetical protein
2651	 38.02	0	3130386..3132242	-	618	209696285	-	VSAL_I2886	-	putative outer membrane associated TonB dependent receptor
2652	 37.49	0	3132667..3133773	+	368	209696286	trmA	VSAL_I2887	-	tRNA (uracil-5)-methyltransferase
2653	 37.07	0	3133846..3134220	-	124	209696287	-	VSAL_I2888	-	inner membrane protein
2654	 41.06	0	3134265..3134963	-	232	209696288	-	VSAL_I2889	-	HTH-type transcriptional regulator, TetR-family
2655	 40.47	0	3135177..3136592	+	471	209696289	sthA	VSAL_I2890	-	soluble pyridine nucleotide transhydrogenase
2656	 39.26	0	3136681..3138012	-	443	209696290	vcmD	VSAL_I2891	-	multidrug efflux pump
2657	 41.33	0	3138095..3138907	-	270	209696291	-	VSAL_I2892	-	hypothetical protein
2658	 42.95	+1	3138998..3139621	-	207	209696292	lexA	VSAL_I2893	-	LexA repressor
2659	 40.72	0	3139863..3142286	+	807	209696293	plsB	VSAL_I2894	-	glycerol-3-phosphate acyltransferase
2660	 40.91	0	3142377..3143234	-	285	209696294	ubiA	VSAL_I2895	-	4-hydroxybenzoate octaprenyltransferase
2661	 39.97	0	3143231..3143803	-	190	209696295	ubiC	VSAL_I2896	-	chorismate--pyruvate lyase
2662	 37.71	0	3143925..3144335	+	136	209696296	-	VSAL_I2897	-	putative flagellar basal body-associated protein FliL
2663	 39.17	0	3144389..3145228	-	279	209696297	-	VSAL_I2898	-	integral membrane protein
2664	 40.12	0	3145236..3145559	-	107	209696298	glpE	VSAL_I2899	-	thiosulfate sulfurtransferase
2665	 40.19	0	3145988..3146848	-	286	209696299	rpoH	VSAL_I2900	-	RNA polymerase sigma-32 factor
2666	 39.10	0	3147076..3148029	-	317	209696300	ftsX	VSAL_I2901	-	cell division protein FtsX
2667	 39.61	0	3148022..3148690	-	222	209696301	ftsE	VSAL_I2902	-	cell division ATP-binding protein FtsE
2668	 39.98	0	3148694..3149926	-	410	209696302	ftsY	VSAL_I2903	-	cell division protein FtsY
2669	 39.41	0	3149997..3150605	+	202	209696303	-	VSAL_I2904	-	hypothetical protein
2670	 38.10	0	3150606..3150878	+	90	209696304	-	VSAL_I2905	-	hypothetical protein
2671	 36.21	-1	3151679..3151921	-	80	209696305	-	VSAL_I2907	-	hypothetical protein
2672	 33.61	-1	3152793..3153158	-	121	209696306	-	VSAL_I2908	-	hypothetical protein
2673	 36.94	0	3153432..3153764	+	110	209696307	-	VSAL_I2909	-	hypothetical protein
2674	 42.60	+1	3153779..3155860	+	693	209696308	recG	VSAL_I2910	-	ATP-dependent DNA helicase RecG
2675	 41.88	0	3155939..3156523	-	194	209696309	-	VSAL_I2911	-	hypothetical protein
2676	 41.27	0	3156642..3157460	-	272	209696310	cysQ	VSAL_I2912	-	protein CysQ
2677	 41.12	0	3157466..3158017	-	183	209696311	nudE	VSAL_I2913	-	ADP compounds hydrolase NudE
2678	 43.44	+1	3158027..3158788	-	253	209696312	exeN	VSAL_I2914	-	general secretion pathway protein N
2679	 40.65	0	3158785..3159276	-	163	209696313	epsM	VSAL_I2915	-	general secretion pathway protein M
2680	 40.78	0	3159276..3160511	-	411	209696314	epsL	VSAL_I2916	-	general secretion pathway protein L
2681	 40.69	0	3160504..3161523	-	339	209696315	epsK	VSAL_I2917	-	general secretion pathway protein K
2682	 39.97	0	3161538..3162185	-	215	209696316	epsJ	VSAL_I2918	-	general secretion pathway protein J
2683	 39.68	0	3162190..3162567	-	125	209696317	epsI	VSAL_I2919	-	general secretion pathway protein I
2684	 42.55	0	3162557..3163153	-	198	209696318	epsH	VSAL_I2920	-	general secretion pathway protein H precursor
2685	 40.89	0	3163185..3163634	-	149	209696319	epsG	VSAL_I2921	-	general secretion pathway protein G
2686	 41.05	0	3163698..3164915	-	405	209696320	epsF	VSAL_I2922	-	general secretion pathway protein F
2687	 42.53	0	3164916..3166415	-	499	209696321	epsE	VSAL_I2923	-	general secretion pathway protein E
2688	 41.67	0	3166415..3168442	-	675	209696322	epsD	VSAL_I2924	-	general secretion pathway protein D
2689	 39.36	0	3168486..3169397	-	303	209696323	epsC	VSAL_I2925	-	general secretion pathway protein C
2690	 42.54	0	3169675..3170076	+	133	209696324	hslR	VSAL_I2926	-	heat shock protein 15
2691	 40.98	0	3170167..3171042	+	291	209696325	hslO	VSAL_I2927	-	33 kda chaperonin (heat shock protein 33)
2692	 41.02	0	3171402..3173027	+	541	209696326	pckA	VSAL_I2928	-	phosphoenolpyruvate carboxykinase
2693	 37.62	0	3173232..3175214	+	660	209696327	-	VSAL_I2929	-	hypothetical protein
2694	 37.18	0	3175273..3176493	-	406	209696328	-	VSAL_I2930	-	putative signaling protein
2695	 39.01	0	3176743..3177711	+	322	209696329	-	VSAL_I2931	-	lysophospholipase L2 LypA
2696	 37.09	0	3177835..3178632	+	265	209696330	-	VSAL_I2932	-	hypothetical protein
2697	 36.21	-1	3180276..3180623	-	115	209696331	-	VSAL_I2934	-	transposase
2698	 37.78	0	3180620..3180934	-	104	209696332	-	VSAL_I2935	-	transposase
2699	 44.67	+1	3181638..3182537	-	299	209696333	-	VSAL_I2936	-	putative acyltransferase
2700	 41.61	0	3182875..3183309	-	144	209696334	dtd	VSAL_I2937	-	D-tyrosyl-tRNA(tyr) deacylase
2701	 39.01	0	3183281..3184213	-	310	209696335	rbn	VSAL_I2938	-	tRNA-processing ribonuclease BN
2702	 42.73	+1	3184346..3186175	-	609	209696336	-	VSAL_I2939	-	putative elongation factor Tu, GTP binding domain
2703	 43.40	+1	3186733..3188142	+	469	209696337	glnA	VSAL_I2940	-	glutamine synthetase
2704	 37.78	0	3188568..3188882	+	104	209696338	-	VSAL_I2941	-	transposase
2705	 36.21	-1	3188879..3189226	+	115	209696339	-	VSAL_I2942	-	transposase
2706	 39.72	0	3189298..3190785	+	495	209696340	-	VSAL_I2943	-	transposase
2707	 41.77	0	3190919..3191380	-	153	209696341	asnC	VSAL_I2944	-	HTH-type transcriptional regulator, AsnC-family
2708	 46.10	+2	3191536..3192318	+	260	209696342	-	VSAL_I2945	-	hypothetical protein
2709	 37.79	0	3192315..3192740	-	141	209696343	uspA	VSAL_I2946	-	universal stress protein A
2710	 38.45	0	3192947..3193474	+	175	209696344	ftnA	VSAL_I2947	-	ferritin-1
2711	 37.76	0	3193585..3193923	+	112	209696345	uspB	VSAL_I2948	-	universal stress protein B
2712	 41.21	0	3193951..3195156	+	401	209696346	-	VSAL_I2949	-	putative FAD dependent oxidoreductase
2713	 37.78	0	3197135..3197449	+	104	209696347	-	VSAL_I2951	-	transposase
2714	 35.92	-1	3197446..3197793	+	115	209696348	-	VSAL_I2952	-	transposase
2715	 39.65	0	3197865..3199352	+	495	209696349	-	VSAL_I2953	-	transposase
2716	 39.63	0	3200094..3200681	-	195	209696350	-	VSAL_I2954	-	hypothetical protein
2717	 43.04	+1	3200681..3201700	-	339	209696351	-	VSAL_I2955	-	putative lipoprotein
2718	 45.75	+2	3201855..3202490	+	211	209696352	eda	VSAL_I2956	-	KHG/KDPG aldolase
2719	 36.21	-1	3204396..3204743	-	115	209696353	-	VSAL_I2959	-	transposase
2720	 37.78	0	3204740..3205054	-	104	209696354	-	VSAL_I2960	-	transposase
2721	 42.07	0	3205351..3205785	+	144	209696355	ibpA	VSAL_I2961	-	small heat shock protein
2722	 39.14	0	3205841..3207166	-	441	209696356	-	VSAL_I2962	-	transposase
2723	 42.87	+1	3207539..3208786	-	415	209696357	avtA	VSAL_I2963	-	valine--pyruvate aminotransferase (alanine--valine transaminase)
2724	 44.91	+1	3209005..3209937	+	310	209696358	glyQ	VSAL_I2964	-	glycine-tRNA synthetase, alpha subunit
2725	 44.22	+1	3209940..3212006	+	688	209696359	glyS	VSAL_I2965	-	glycine-tRNA synthetase, beta subunit
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.