version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2593 39.48 0 3057933..3058697 - 254 209696227 - VSAL_I2823 - putative glucitol operon repressor 2594 42.38 0 3058924..3059553 + 209 209696228 - VSAL_I2824 - transcriptional regulator, LuxR response regulator receiver 2595 39.74 0 3059641..3060264 + 207 209696229 - VSAL_I2825 - integral membrane protein, MarC family 2596 39.14 0 3060371..3061696 - 441 209696230 - VSAL_I2826 - transposase 2597 39.47 0 3061810..3062151 + 113 209696231 - VSAL_I2827 - hypothetical protein 2598 44.66 +1 3062162..3063865 + 567 209696232 - VSAL_I2828 - putative sodium/solute symporter 2599 43.72 +1 3063960..3067406 - 1148 209696233 - VSAL_I2829 - membrane associated response regulator, histidine kinase 2600 43.49 +1 3067539..3068720 - 393 209696234 - VSAL_I2830 - MFS transporter 2601 38.46 0 3068890..3070722 + 610 209696235 - VSAL_I2831 - putative nucleotidyltransferases 2602 40.92 0 3070724..3071356 + 210 209696236 - VSAL_I2832 - putative exonuclease 2603 45.49 +1 3071562..3073511 + 649 209696237 acs VSAL_I2833 - acetyl-coenzyme A synthetase 2604 40.67 0 3073970..3074419 + 149 209696238 aroQ VSAL_I2834 - 3-dehydroquinate dehydratase 2605 45.83 +2 3074450..3074905 + 151 209696239 accB VSAL_I2835 - biotin carboxyl carrier protein of acetyl-CoA carboxylase 2606 42.56 +1 3074918..3076261 + 447 209696240 accC VSAL_I2836 - biotin carboxylase (acetyl-CoA carboxylase subunit A) 2607 44.07 +1 3076378..3077262 + 294 209696241 prmA VSAL_I2837 - ribosomal protein L11 methyltransferase 2608 44.99 +1 3077458..3078426 + 322 209696242 dusB VSAL_I2838 - tRNA-dihydrouridine synthase B 2609 39.39 0 3078449..3078745 + 98 209696243 fis VSAL_I2839 - DNA-binding protein Fis 2610 44.06 +1 3078885..3079229 - 114 209696244 - VSAL_I2840 - hypothetical protein 2611 35.95 -1 3079278..3079697 - 139 209696245 - VSAL_I2841 - HTH-type transcriptional regulator, MerR-family 2612 45.70 +2 3079982..3081574 + 530 209696246 purH VSAL_I2842 - bifunctional purine biosynthesis protein PurH 2613 45.94 +2 3081756..3083048 + 430 209696247 purD VSAL_I2843 - phosphoribosylamine--glycine ligase 2614 39.14 0 3083164..3084489 + 441 209696248 - VSAL_I2844 - transposase 2615 38.44 0 3084535..3085239 - 234 209696249 - VSAL_I2845 - putative lipoprotein 2616 41.76 0 3085279..3085551 - 90 209696250 hupA VSAL_I2846 - DNA-binding protein HU-alpha 2617 39.55 0 3085774..3086835 + 353 209696251 - VSAL_I2847 - putative modulator of ion transport 2618 35.35 -1 3086932..3087525 - 197 209696252 - VSAL_I2848 - hypothetical protein 2619 35.19 -1 3087597..3088511 + 304 209696253 - VSAL_I2849 - putative D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2620 36.62 0 3088552..3089007 - 151 209696254 - VSAL_I2850 - hypothetical protein 2621 41.76 0 3089204..3090271 - 355 209696255 hemE VSAL_I2851 - uroporphyrinogen decarboxylase 2622 40.79 0 3091004..3092197 + 397 209696256 - VSAL_I2853 - transposase 2623 36.86 0 3092825..3093334 + 169 209696257 - VSAL_I2854 - Regulator of RNA polymerase sigma (70) subunit 2624 38.06 0 3094233..3094634 - 133 209696258 csgF VSAL_I2856 - assembly/transport component in curli production, CsgF precursor 2625 33.77 -1 3094644..3095105 - 153 209696259 csgE VSAL_I2857 - assembly/transport component in curli production, CsgE precursor 2626 28.55 -2 3095102..3095749 - 215 209696260 csgD VSAL_I2858 - probable CsgAB operon transcriptional regulatory protein 2627 34.04 -1 3096149..3096715 - 188 209696261 - VSAL_I2860 - transposase 2628 35.70 -1 3096733..3097155 - 140 209696262 - VSAL_I2861 - transposase 2629 35.94 -1 3097957..3098838 - 293 209696263 - VSAL_I2863 - transposase 2630 35.13 -1 3099392..3100336 + 314 209696264 csgA VSAL_I2864 - curlin associated precursor, CsgA like 2631 43.25 +1 3100411..3104616 - 1401 209696265 rpoC VSAL_I2865 - DNA-directed RNA polymerase beta' chain 2632 42.05 0 3104688..3108716 - 1342 209696266 rpoB VSAL_I2866 - DNA-directed RNA polymerase, beta-subunit 2633 45.08 +1 3108948..3109313 - 121 209696267 rplL VSAL_I2867 - 50S ribosomal subunit protein L7/L12 2634 44.44 +1 3109369..3109863 - 164 209696268 rplJ VSAL_I2868 - 50S ribosomal subunit protein L10 2635 42.13 0 3110109..3110813 - 234 209696269 rplA VSAL_I2869 - 50S ribosomal protein L1 2636 44.52 +1 3110818..3111246 - 142 209696270 rplK VSAL_I2870 - 50S ribosomal protein L11 2637 40.66 0 3111366..3111911 - 181 209696271 nusG VSAL_I2871 - transcription antitermination protein NusG 2638 39.15 0 3111924..3112301 - 125 209696272 secE VSAL_I2872b - preprotein translocase sece subunit 2639 35.94 -1 3114297..3115178 + 293 209696273 - VSAL_I2874 - transposase 2640 31.82 -2 3115312..3116235 + 307 209696274 coaA VSAL_I2875 - pantothenate kinase 2641 38.65 0 3116236..3117195 - 319 209696275 birA VSAL_I2876 - bifunctional protein BirA, biotin operon repressor and biotin-[acetyl-CoA carboxylase] synthetase 2642 33.43 -1 3117192..3118232 - 346 209696276 murB VSAL_I2877 - UDP-N-acetylenolpyruvoylglucosamine reductase 2643 29.60 -2 3118304..3118732 + 142 209696277 - VSAL_I2878 - hypothetical protein 2644 35.33 -1 3118812..3120164 + 450 209696278 pssA VSAL_I2879 - CDP-diacylglycerol--serine O-phosphatidyltransferase 2645 37.78 0 3120327..3120641 + 104 209696279 - VSAL_I2880 - transposase 2646 36.21 -1 3120638..3120985 + 115 209696280 - VSAL_I2881 - transposase 2647 39.78 0 3121057..3122544 + 495 209696281 - VSAL_I2882 - transposase 2648 36.21 -1 3128367..3128852 + 161 209696282 - VSAL_I2883 - putative RNA binding protein 2649 34.46 -1 3128806..3129603 - 265 209696283 murI VSAL_I2884 - glutamate racemase 2650 37.80 0 3129664..3130335 - 223 209696284 - VSAL_I2885 - hypothetical protein 2651 38.02 0 3130386..3132242 - 618 209696285 - VSAL_I2886 - putative outer membrane associated TonB dependent receptor 2652 37.49 0 3132667..3133773 + 368 209696286 trmA VSAL_I2887 - tRNA (uracil-5)-methyltransferase 2653 37.07 0 3133846..3134220 - 124 209696287 - VSAL_I2888 - inner membrane protein 2654 41.06 0 3134265..3134963 - 232 209696288 - VSAL_I2889 - HTH-type transcriptional regulator, TetR-family 2655 40.47 0 3135177..3136592 + 471 209696289 sthA VSAL_I2890 - soluble pyridine nucleotide transhydrogenase 2656 39.26 0 3136681..3138012 - 443 209696290 vcmD VSAL_I2891 - multidrug efflux pump 2657 41.33 0 3138095..3138907 - 270 209696291 - VSAL_I2892 - hypothetical protein 2658 42.95 +1 3138998..3139621 - 207 209696292 lexA VSAL_I2893 - LexA repressor 2659 40.72 0 3139863..3142286 + 807 209696293 plsB VSAL_I2894 - glycerol-3-phosphate acyltransferase 2660 40.91 0 3142377..3143234 - 285 209696294 ubiA VSAL_I2895 - 4-hydroxybenzoate octaprenyltransferase 2661 39.97 0 3143231..3143803 - 190 209696295 ubiC VSAL_I2896 - chorismate--pyruvate lyase 2662 37.71 0 3143925..3144335 + 136 209696296 - VSAL_I2897 - putative flagellar basal body-associated protein FliL 2663 39.17 0 3144389..3145228 - 279 209696297 - VSAL_I2898 - integral membrane protein 2664 40.12 0 3145236..3145559 - 107 209696298 glpE VSAL_I2899 - thiosulfate sulfurtransferase 2665 40.19 0 3145988..3146848 - 286 209696299 rpoH VSAL_I2900 - RNA polymerase sigma-32 factor 2666 39.10 0 3147076..3148029 - 317 209696300 ftsX VSAL_I2901 - cell division protein FtsX 2667 39.61 0 3148022..3148690 - 222 209696301 ftsE VSAL_I2902 - cell division ATP-binding protein FtsE 2668 39.98 0 3148694..3149926 - 410 209696302 ftsY VSAL_I2903 - cell division protein FtsY 2669 39.41 0 3149997..3150605 + 202 209696303 - VSAL_I2904 - hypothetical protein 2670 38.10 0 3150606..3150878 + 90 209696304 - VSAL_I2905 - hypothetical protein 2671 36.21 -1 3151679..3151921 - 80 209696305 - VSAL_I2907 - hypothetical protein 2672 33.61 -1 3152793..3153158 - 121 209696306 - VSAL_I2908 - hypothetical protein 2673 36.94 0 3153432..3153764 + 110 209696307 - VSAL_I2909 - hypothetical protein 2674 42.60 +1 3153779..3155860 + 693 209696308 recG VSAL_I2910 - ATP-dependent DNA helicase RecG 2675 41.88 0 3155939..3156523 - 194 209696309 - VSAL_I2911 - hypothetical protein 2676 41.27 0 3156642..3157460 - 272 209696310 cysQ VSAL_I2912 - protein CysQ 2677 41.12 0 3157466..3158017 - 183 209696311 nudE VSAL_I2913 - ADP compounds hydrolase NudE 2678 43.44 +1 3158027..3158788 - 253 209696312 exeN VSAL_I2914 - general secretion pathway protein N 2679 40.65 0 3158785..3159276 - 163 209696313 epsM VSAL_I2915 - general secretion pathway protein M 2680 40.78 0 3159276..3160511 - 411 209696314 epsL VSAL_I2916 - general secretion pathway protein L 2681 40.69 0 3160504..3161523 - 339 209696315 epsK VSAL_I2917 - general secretion pathway protein K 2682 39.97 0 3161538..3162185 - 215 209696316 epsJ VSAL_I2918 - general secretion pathway protein J 2683 39.68 0 3162190..3162567 - 125 209696317 epsI VSAL_I2919 - general secretion pathway protein I 2684 42.55 0 3162557..3163153 - 198 209696318 epsH VSAL_I2920 - general secretion pathway protein H precursor 2685 40.89 0 3163185..3163634 - 149 209696319 epsG VSAL_I2921 - general secretion pathway protein G 2686 41.05 0 3163698..3164915 - 405 209696320 epsF VSAL_I2922 - general secretion pathway protein F 2687 42.53 0 3164916..3166415 - 499 209696321 epsE VSAL_I2923 - general secretion pathway protein E 2688 41.67 0 3166415..3168442 - 675 209696322 epsD VSAL_I2924 - general secretion pathway protein D 2689 39.36 0 3168486..3169397 - 303 209696323 epsC VSAL_I2925 - general secretion pathway protein C 2690 42.54 0 3169675..3170076 + 133 209696324 hslR VSAL_I2926 - heat shock protein 15 2691 40.98 0 3170167..3171042 + 291 209696325 hslO VSAL_I2927 - 33 kda chaperonin (heat shock protein 33) 2692 41.02 0 3171402..3173027 + 541 209696326 pckA VSAL_I2928 - phosphoenolpyruvate carboxykinase 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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