version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 213 36.21 -1 281080..281427 + 115 209693847 - VSAL_I0235 - transposase 214 39.72 0 281499..282986 + 495 209693848 - VSAL_I0236 - transposase 215 41.76 0 283303..284334 - 343 209693849 - VSAL_I0238 - glycosyl tranferase 216 38.06 0 284334..285116 - 260 209693850 waaE VSAL_I0239 - glucosyl transferase 217 40.20 0 285116..286237 - 373 209693851 - VSAL_I0240 - lipopolysaccharide core biosynthesis glycosyl transferase protein 218 36.74 0 286562..287266 + 234 209693852 wavC VSAL_I0241 - lipopolysaccharide core oligosaccharide biosynthesis protein WavC 219 38.19 0 287299..289152 + 617 209693853 - VSAL_I0242 - membrane associated sulfatase 220 39.93 0 289174..290265 + 363 209693854 rmlB VSAL_I0243 - dTDP-D-glucose-4,6-dehydratase 221 38.42 0 290265..291149 + 294 209693855 rmlA VSAL_I0244 - glucose-1-phosphate thymidylyltransferase RmlA 222 39.43 0 292059..292616 + 185 209693856 rmlC VSAL_I0246 - dTDP-4-dehydrorhamnose 3,5-epimerase 223 35.48 -1 292617..293456 + 279 209693857 wavT VSAL_I0247 - putative glycosyl transferase 224 34.03 -1 294239..295381 + 380 209693858 rffA VSAL_I0249 - lipopolysaccharide biosynthesis protein RffA 225 33.07 -2 295378..296499 + 373 209693859 - VSAL_I0250 - hypothetical protein 226 37.87 0 296617..297807 + 396 209693860 - VSAL_I0251 - capsular polysaccharide biosynthesis protein 227 40.75 0 297831..298976 + 381 209693861 - VSAL_I0252 - DegT/DnrJ/EryC1/StrS aminotransferase 228 39.75 0 299014..300198 + 394 209693862 - VSAL_I0253 - UDP-N-acetylglucosamine 2-epimerase 229 40.13 0 300206..301279 + 357 209693863 - VSAL_I0254 - N-acetylneuraminic acid synthase 230 39.38 0 301272..301916 + 214 209693864 - VSAL_I0255 - putative acetyltransferase 231 37.96 0 301932..302990 + 352 209693865 - VSAL_I0256 - nucleotidyl transferase 232 34.78 -1 303682..304785 + 367 209693866 - VSAL_I0258 - putative outer membrane protein 233 39.60 0 305038..305994 + 318 209693867 - VSAL_I0259 - transposase 234 35.03 -1 306147..307148 - 333 209693868 - VSAL_I0260 - hypothetical protein 235 40.06 0 307195..308457 - 420 209693869 - VSAL_I0261 - 3-deoxy-D-manno-octulosonic-acid transferase 236 41.83 0 308451..309521 - 356 209693870 - VSAL_I0262 - ADP-heptose-LPS heptosyltransferase II 237 39.77 0 309518..310744 - 408 209693871 - VSAL_I0263 - O-antigen ligase WaaL 238 42.89 +1 310915..311856 - 313 209693872 hldD VSAL_I0264 - ADP-L-glycero-D-manno-heptose-6-epimerase 239 43.78 +1 312237..313691 + 484 209693873 - VSAL_I0265 - putative metallo-beta-lactamase 240 35.92 -1 313868..314215 + 115 209693874 - VSAL_I0266 - hypothetical protein 241 37.98 0 314332..314976 + 214 209693875 - VSAL_I0267 - HTH-type transcriptional regulator, tetR-family 242 40.89 0 315135..316286 + 383 209693876 - VSAL_I0268 - hypothetical protein 243 42.64 +1 316286..317005 + 239 209693877 - VSAL_I0269 - hypothetical protein 244 36.00 -1 317174..317698 + 174 209693878 - VSAL_I0270 - putative lipoprotein 245 32.91 -2 317676..318617 + 313 209693879 - VSAL_I0271 - hypothetical protein 246 40.22 0 318954..321161 - 735 209693880 - VSAL_I0272 - putative outer membrane protein 247 36.60 0 321164..321928 - 254 209693881 - VSAL_I0273 - exported protein 248 37.24 0 321935..322600 - 221 209693882 - VSAL_I0274 - putative lipoprotein 249 49.22 +2 322685..322942 - 85 209693883 - VSAL_I0275 - membrane protein 250 42.84 +1 323139..324506 + 455 209693884 - VSAL_I0276 - hypothetical protein 251 41.72 0 324575..327184 + 869 209693885 - VSAL_I0277 - periplasmic protein involved in polysaccharide export 252 42.64 +1 327417..328394 + 325 209693886 wzz VSAL_I0278 - O-antigen length determinant protein 253 37.78 0 328784..329098 + 104 209693887 - VSAL_I0279 - transposase 254 36.21 -1 329095..329442 + 115 209693888 - VSAL_I0280 - transposase 255 32.52 -2 331420..331788 - 122 209693889 - VSAL_I0282 - hypothetical protein 256 46.56 +2 332081..332851 - 256 209693890 tpiA VSAL_I0283 - triosephosphate isomerase 257 40.17 0 333134..333484 + 116 209693891 hpcD VSAL_I0284 - 5-carboxymethyl-2-hydroxymuconate isomerase 258 35.94 -1 333689..334570 + 293 209693892 - VSAL_I0286 - transposase 259 46.03 +2 335317..336324 - 335 209693893 glpX VSAL_I0287 - fructose-1,6-bisphosphatase class II GlpX 260 38.68 0 336692..336934 + 80 209693894 - VSAL_I0288 - hypothetical protein 261 37.78 0 337220..337534 + 104 209693895 - VSAL_I0289 - transposase 262 35.92 -1 337531..337878 + 115 209693896 - VSAL_I0290 - transposase 263 39.65 0 337950..339437 + 495 209693897 - VSAL_I0291 - transposase 264 41.16 0 339695..340192 - 165 209693898 rraA VSAL_I0292 - regulator of ribonuclease activity A 265 43.78 +1 340286..341194 - 302 209693899 menA VSAL_I0293 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 266 42.99 +1 341282..342151 - 289 209693900 cfxP VSAL_I0294 - phosphoribulokinase 267 40.33 0 342253..342495 - 80 209693901 - VSAL_I0295 - hypothetical protein 268 41.90 0 342530..343498 - 322 209693902 - VSAL_I0296 - putative hydrolase 269 37.27 0 343518..344000 - 160 209693903 - VSAL_I0297 - hypothetical protein 270 41.77 0 343984..345915 - 643 209693904 - VSAL_I0298 - ABC transporter ATP-binding protein 271 39.62 0 346064..346636 + 190 209693905 kefG VSAL_I0299 - glutathione-regulated potassium-efflux system ancillary protein KefG 272 42.94 +1 346636..348426 + 596 209693906 kefB VSAL_I0300 - glutathione-regulated potassium-efflux system protein KefB (K(+)/H(+) antiporter) 273 41.54 0 348447..348641 + 64 209693907 - VSAL_I0301 - hypothetical protein 274 45.69 +2 348699..349289 + 196 209693908 slyD VSAL_I0302 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 275 36.44 0 349477..349701 - 74 209693909 - VSAL_I0303 - hypothetical protein 276 40.51 0 349698..350714 - 338 209693910 - VSAL_I0304 - putative lipoprotein 277 40.13 0 350844..351638 + 264 209693911 fkpA VSAL_I0305 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor 278 37.25 0 351827..352540 + 237 209693912 - VSAL_I0306 - putative DNA-binding protein 279 40.46 0 352537..352929 + 130 209693913 dsrE VSAL_I0307 - intracellular sulfur oxidation protein DsrE 280 35.01 -1 352959..353315 + 118 209693914 dsrF VSAL_I0308 - intracellular sulfur oxidation protein DsrF 281 31.25 -2 353325..353612 + 95 209693915 - VSAL_I0309 - hypothetical protein 282 45.60 +1 353778..354152 + 124 209693916 rpsL VSAL_I0310 - 30S ribosomal protein S12 283 43.95 +1 354263..354733 + 156 209693917 rpsG VSAL_I0311 - 30S ribosomal protein S7 284 43.58 +1 354867..356954 + 695 209693918 fusA VSAL_I0312 - elongation factor G 285 44.05 +1 357073..358257 + 394 209693919 tuf VSAL_I0313 - elongation factor Tu 286 38.14 0 359387..359698 + 103 209693920 - VSAL_I0315 - transposase 287 36.21 -1 359695..360042 + 115 209693921 - VSAL_I0316 - transposase 288 35.94 -1 360130..361011 - 293 209693922 - VSAL_I0317 - transposase 289 44.23 +1 363557..363868 + 103 209693923 rpsJ VSAL_I0319 - 30S ribosomal subunit protein S10 290 44.60 +1 363881..364510 + 209 209693924 rplC VSAL_I0320 - 50S ribosomal protein L3 291 44.61 +1 364528..365130 + 200 209693925 rplD VSAL_I0321 - 50S ribosomal protein L4 292 41.25 0 365127..365429 + 100 209693926 rplW VSAL_I0322 - 50S ribosomal protein L23 293 46.42 +2 365445..366269 + 274 209693927 rplB VSAL_I0323 - 50S ribosomal protein L2 294 45.88 +2 366289..366567 + 92 209693928 rpsS VSAL_I0324 - 30S ribosomal protein S19 295 42.94 +1 366578..366910 + 110 209693929 rplV VSAL_I0325 - 50S ribosomal subunit protein L22 296 47.78 +2 366930..367628 + 232 209693930 rpsC VSAL_I0326 - 30S ribosomal subunit protein S3 297 47.93 +2 367640..368050 + 136 209693931 rplP VSAL_I0327 - 50S ribosomal subunit protein L16 298 41.67 0 368050..368241 + 63 209693932 rpmC VSAL_I0328 - 50S ribosomal protein L29 299 40.78 0 368241..368495 + 84 209693933 rpsQ VSAL_I0329 - 30S ribosomal protein S17 300 45.97 +2 368658..369029 + 123 209693934 rplN VSAL_I0330 - 50S ribosomal protein L14 301 39.62 0 369040..369357 + 105 209693935 rplX VSAL_I0331 - 50S ribosomal protein L24 302 45.37 +1 369385..369924 + 179 209693936 rplE VSAL_I0332 - 50S ribosomal protein L5 303 42.81 +1 369942..370247 + 101 209693937 rpsN VSAL_I0333 - 30S ribosomal protein S14 304 43.51 +1 370277..370669 + 130 209693938 rpsH VSAL_I0334 - 30S ribosomal protein S8 305 43.63 +1 370682..371215 + 177 209693939 rplF VSAL_I0335 - 50E ribosomal protein L6 306 48.31 +2 371225..371578 + 117 209693940 rplR VSAL_I0336 - 50S ribosomal protein L18 307 44.31 +1 371593..372093 + 166 209693941 rpsE VSAL_I0337 - 30S ribosomal protein S5 308 42.78 +1 372099..372278 + 59 209693942 rpmD VSAL_I0338 - 50S ribosomal protein L30 309 45.06 +1 372285..372719 + 144 209693943 rplO VSAL_I0339 - 50S ribosomal protein L15 310 43.09 +1 372740..374071 + 443 209693944 secY VSAL_I0340 - preprotein translocase SecY subunit 311 46.78 +2 374362..374718 + 118 209693945 rpsM VSAL_I0341 - 30S ribosomal protein S13 312 47.69 +2 374740..375129 + 129 209693946 rpsK VSAL_I0342 - 30S ribosomal protein S11 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0