version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2534 40.13 0 2992910..2993806 - 298 209696168 metF VSAL_I2762 - 5,10-methylenetetrahydrofolate reductase 2535 44.22 +1 2994101..2994550 - 149 209696169 rplI VSAL_I2763 - 50S ribosomal subunit protein L9 2536 44.74 +1 2994591..2994818 - 75 209696170 rpsR VSAL_I2764 - 30S ribosomal subunit protein S18 2537 44.22 +1 2994834..2995136 - 100 209696171 priB VSAL_I2765 - primosomal replication protein N 2538 45.93 +2 2995145..2995525 - 126 209696172 rpsF VSAL_I2766 - 30S ribosomal protein S6 2539 43.28 +1 2995758..2996501 - 247 209696173 rlmB VSAL_I2767 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB 2540 43.13 +1 2996572..2999073 - 833 209696174 rnr VSAL_I2768 - ribonuclease R 2541 37.09 0 2999153..2999578 - 141 209696175 - VSAL_I2769 - putative transcriptional regulator 2542 39.24 0 2999713..3000897 + 394 209696176 hmp VSAL_I2770 - flavohemoprotein 2543 42.81 +1 3000998..3001630 - 210 209696177 motX VSAL_I2771 - sodium-type polar flagellar protein MotX 2544 42.37 0 3001857..3003173 - 438 209696178 purA VSAL_I2772 - adenylosuccinate synthetase 2545 41.94 0 3003352..3003537 - 61 209696179 - VSAL_I2773 - hypothetical protein 2546 39.55 0 3003625..3004509 - 294 209696180 hflC VSAL_I2774 - HflC protein 2547 40.44 0 3004512..3005735 - 407 209696181 hflK VSAL_I2775 - HflK protein 2548 41.29 0 3005754..3007073 - 439 209696182 hflX VSAL_I2776 - HflX protein, putative GTP-binding protein 2549 39.70 0 3007118..3007384 - 88 209696183 hfq VSAL_I2777 - RNA-binding protein Hfq 2550 41.61 0 3007479..3008420 - 313 209696184 miaA VSAL_I2778 - tRNA delta-2-isopentenylpyrophosphate (IPP) transferase 2551 39.56 0 3008413..3010371 - 652 209696185 mutL VSAL_I2779 - DNA mismatch repair protein MutL 2552 38.51 0 3010386..3012125 - 579 209696186 amiB VSAL_I2780 - N-acetylmuramoyl-L-alanine amidase 2553 39.14 0 3012119..3012583 - 154 209696187 - VSAL_I2781 - hypothetical protein 2554 40.75 0 3012804..3013922 + 372 209696188 - VSAL_I2782 - putative ferredoxin, 4Fe-4S binding protein 2555 38.28 0 3015920..3016465 - 181 209696189 orn VSAL_I2783 - oligoribonuclease 2556 39.58 0 3016564..3017619 + 351 209696190 - VSAL_I2784 - probable GTPase 2557 40.62 0 3017678..3018541 + 287 209696191 psd VSAL_I2785 - phosphatidylserine decarboxylase proenzyme 2558 45.07 +1 3018652..3019614 + 320 209696192 - VSAL_I2786 - integral membrane protein 2559 42.25 0 3019655..3020641 - 328 209696193 - VSAL_I2787 - putative lysyl-tRNA synthetase 2560 44.07 +1 3020995..3022848 + 617 209696194 - VSAL_I2788 - fumarate reductase complex, flavoprotein subunit 2561 42.47 0 3022848..3023591 + 247 209696195 frdB VSAL_I2789 - fumarate reductase complex, iron-sulfur protein 2562 41.67 0 3023594..3023977 + 127 209696196 frdC VSAL_I2790 - fumarate reductase complex, membrane anchor subunit C 2563 43.25 +1 3023989..3024351 + 120 209696197 frdD VSAL_I2791 - fumarate reductase complex, membrane anchor subunit D 2564 40.92 0 3024543..3025109 - 188 209696198 efp VSAL_I2792 - elongation factor P (EF-P) 2565 40.18 0 3025142..3026164 + 340 209696199 - VSAL_I2793 - hypothetical protein 2566 41.85 0 3026252..3027214 - 320 209696200 pfkA VSAL_I2794 - 6-phosphofructokinase isozyme 1 2567 41.94 0 3027433..3028338 - 301 209696201 fieF VSAL_I2795 - ferrous-iron efflux pump FieF 2568 38.46 0 3028498..3029004 - 168 209696202 - VSAL_I2796 - putative periplasmic protein CpxP 2569 39.47 0 3029199..3029882 + 227 209696203 cpxR VSAL_I2797 - transcriptional regulator, CpxR 2570 41.68 0 3029888..3031276 + 462 209696204 cpxA VSAL_I2798 - sensor protein CpxA 2571 42.29 0 3031372..3031851 + 159 209696205 yibK VSAL_I2799 - hypothetical tRNA/rRNA methyltransferase 2572 45.99 +2 3031953..3032774 - 273 209696206 cysE VSAL_I2800 - serine acetyltransferase 2573 43.51 +1 3032793..3033824 - 343 209696207 gpsA VSAL_I2801 - glycerol-3-phosphate dehydrogenase [NAD(P)+] 2574 42.03 0 3033990..3034472 - 160 209696208 secB VSAL_I2802 - protein-export protein SecB 2575 38.81 0 3034600..3035037 - 145 209696209 - VSAL_I2803 - hypothetical protein 2576 40.05 0 3035259..3036404 + 381 209696210 - VSAL_I2804 - putative exported peptidase 2577 42.06 0 3036485..3036988 - 167 209696211 fxsA VSAL_I2805 - protein FxsA 2578 40.92 0 3037403..3038851 + 482 209696212 aspA VSAL_I2806 - aspartate ammonia-lyase(aspartase) 2579 37.78 0 3039055..3039369 + 104 209696213 - VSAL_I2807 - transposase 2580 35.92 -1 3039366..3039713 + 115 209696214 - VSAL_I2808 - transposase 2581 41.81 0 3042841..3044715 + 624 209696215 dsbD VSAL_I2811 - thiol:disulfide interchange protein DsbD precursor 2582 39.08 0 3044823..3045623 + 266 209696216 nagB VSAL_I2812 - glucosamine-6-phosphate deaminase 2583 41.37 0 3046322..3048274 + 650 209696217 mtlA VSAL_I2813 - PTS system, mannitol-specific EIICBA component 2584 39.77 0 3048353..3049501 + 382 209696218 mtlD VSAL_I2814 - mannitol-1-phosphate 5-dehydrogenase 2585 36.91 0 3049551..3050081 + 176 209696219 mtlR VSAL_I2815 - mannitol operon repressor (mannitol repressor protein) 2586 39.89 0 3050102..3051352 - 416 209696220 - VSAL_I2816 - MFS transporter 2587 42.97 +1 3051377..3051874 - 165 209696221 - VSAL_I2817 - hypothetical protein 2588 40.72 0 3051892..3052893 - 333 209696222 gap VSAL_I2818 - glyceraldehyde 3-phosphate dehydrogenase 2589 37.88 0 3052910..3053239 - 109 209696223 arsR VSAL_I2819 - transcriptional regulator, ArsR family 2590 37.34 0 3053485..3054483 + 332 209696224 - VSAL_I2820 - hypothetical protein 2591 41.30 0 3054683..3055912 + 409 209696225 ndh VSAL_I2821 - NADH dehydrogenase 2592 44.46 +1 3055981..3057813 - 610 209696226 glmS VSAL_I2822 - glucosamine--fructose-6-phosphate aminotransferase 2593 39.48 0 3057933..3058697 - 254 209696227 - VSAL_I2823 - putative glucitol operon repressor 2594 42.38 0 3058924..3059553 + 209 209696228 - VSAL_I2824 - transcriptional regulator, LuxR response regulator receiver 2595 39.74 0 3059641..3060264 + 207 209696229 - VSAL_I2825 - integral membrane protein, MarC family 2596 39.14 0 3060371..3061696 - 441 209696230 - VSAL_I2826 - transposase 2597 39.47 0 3061810..3062151 + 113 209696231 - VSAL_I2827 - hypothetical protein 2598 44.66 +1 3062162..3063865 + 567 209696232 - VSAL_I2828 - putative sodium/solute symporter 2599 43.72 +1 3063960..3067406 - 1148 209696233 - VSAL_I2829 - membrane associated response regulator, histidine kinase 2600 43.49 +1 3067539..3068720 - 393 209696234 - VSAL_I2830 - MFS transporter 2601 38.46 0 3068890..3070722 + 610 209696235 - VSAL_I2831 - putative nucleotidyltransferases 2602 40.92 0 3070724..3071356 + 210 209696236 - VSAL_I2832 - putative exonuclease 2603 45.49 +1 3071562..3073511 + 649 209696237 acs VSAL_I2833 - acetyl-coenzyme A synthetase 2604 40.67 0 3073970..3074419 + 149 209696238 aroQ VSAL_I2834 - 3-dehydroquinate dehydratase 2605 45.83 +2 3074450..3074905 + 151 209696239 accB VSAL_I2835 - biotin carboxyl carrier protein of acetyl-CoA carboxylase 2606 42.56 +1 3074918..3076261 + 447 209696240 accC VSAL_I2836 - biotin carboxylase (acetyl-CoA carboxylase subunit A) 2607 44.07 +1 3076378..3077262 + 294 209696241 prmA VSAL_I2837 - ribosomal protein L11 methyltransferase 2608 44.99 +1 3077458..3078426 + 322 209696242 dusB VSAL_I2838 - tRNA-dihydrouridine synthase B 2609 39.39 0 3078449..3078745 + 98 209696243 fis VSAL_I2839 - DNA-binding protein Fis 2610 44.06 +1 3078885..3079229 - 114 209696244 - VSAL_I2840 - hypothetical protein 2611 35.95 -1 3079278..3079697 - 139 209696245 - VSAL_I2841 - HTH-type transcriptional regulator, MerR-family 2612 45.70 +2 3079982..3081574 + 530 209696246 purH VSAL_I2842 - bifunctional purine biosynthesis protein PurH 2613 45.94 +2 3081756..3083048 + 430 209696247 purD VSAL_I2843 - phosphoribosylamine--glycine ligase 2614 39.14 0 3083164..3084489 + 441 209696248 - VSAL_I2844 - transposase 2615 38.44 0 3084535..3085239 - 234 209696249 - VSAL_I2845 - putative lipoprotein 2616 41.76 0 3085279..3085551 - 90 209696250 hupA VSAL_I2846 - DNA-binding protein HU-alpha 2617 39.55 0 3085774..3086835 + 353 209696251 - VSAL_I2847 - putative modulator of ion transport 2618 35.35 -1 3086932..3087525 - 197 209696252 - VSAL_I2848 - hypothetical protein 2619 35.19 -1 3087597..3088511 + 304 209696253 - VSAL_I2849 - putative D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2620 36.62 0 3088552..3089007 - 151 209696254 - VSAL_I2850 - hypothetical protein 2621 41.76 0 3089204..3090271 - 355 209696255 hemE VSAL_I2851 - uroporphyrinogen decarboxylase 2622 40.79 0 3091004..3092197 + 397 209696256 - VSAL_I2853 - transposase 2623 36.86 0 3092825..3093334 + 169 209696257 - VSAL_I2854 - Regulator of RNA polymerase sigma (70) subunit 2624 38.06 0 3094233..3094634 - 133 209696258 csgF VSAL_I2856 - assembly/transport component in curli production, CsgF precursor 2625 33.77 -1 3094644..3095105 - 153 209696259 csgE VSAL_I2857 - assembly/transport component in curli production, CsgE precursor 2626 28.55 -2 3095102..3095749 - 215 209696260 csgD VSAL_I2858 - probable CsgAB operon transcriptional regulatory protein 2627 34.04 -1 3096149..3096715 - 188 209696261 - VSAL_I2860 - transposase 2628 35.70 -1 3096733..3097155 - 140 209696262 - VSAL_I2861 - transposase 2629 35.94 -1 3097957..3098838 - 293 209696263 - VSAL_I2863 - transposase 2630 35.13 -1 3099392..3100336 + 314 209696264 csgA VSAL_I2864 - curlin associated precursor, CsgA like 2631 43.25 +1 3100411..3104616 - 1401 209696265 rpoC VSAL_I2865 - DNA-directed RNA polymerase beta' chain 2632 42.05 0 3104688..3108716 - 1342 209696266 rpoB VSAL_I2866 - DNA-directed RNA polymerase, beta-subunit 2633 45.08 +1 3108948..3109313 - 121 209696267 rplL VSAL_I2867 - 50S ribosomal subunit protein L7/L12 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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