IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2499	 41.52	0	2953235..2953918	+	227	209696133	gph	VSAL_I2727	-	phosphoglycolate phosphatase
2500	 43.36	+1	2954038..2955054	+	338	209696134	trpS	VSAL_I2728	-	tryptophanyl-tRNA synthetase
2501	 36.79	0	2955151..2955729	+	192	209696135	trpG	VSAL_I2729	-	anthranilate synthase component II (glutamine amido transferase)
2502	 37.78	0	2955955..2956269	+	104	209696136	-	VSAL_I2730	-	transposase
2503	 36.49	0	2956266..2956613	+	115	209696137	-	VSAL_I2731	-	transposase
2504	 39.78	0	2956685..2958172	+	495	209696138	-	VSAL_I2732	-	transposase
2505	 44.12	+1	2958360..2959574	+	404	209696139	aruC	VSAL_I2733	-	acetylornithine aminotransferase/succinylornithine transaminase
2506	 41.08	0	2959736..2960755	+	339	209696140	astA	VSAL_I2734	-	arginine N-succinyltransferase
2507	 46.23	+2	2960768..2962225	+	485	209696141	astD	VSAL_I2735	-	succinylglutamic semialdehyde dehydrogenase
2508	 38.74	0	2962238..2963032	+	264	209696142	-	VSAL_I2736	-	hypothetical protein
2509	 40.44	0	2963117..2963749	-	210	209696143	crp	VSAL_I2737	-	cyclic AMP receptor protein
2510	 42.29	0	2963995..2964396	+	133	209696144	-	VSAL_I2738	-	OsmC-like protein
2511	 42.25	0	2964469..2965803	-	444	209696145	hslU	VSAL_I2739	-	ATP-dependent hsl protease ATP-binding subunit HslU (heat shock protein HslU)
2512	 42.00	0	2965816..2966346	-	176	209696146	hslV	VSAL_I2740	-	ATP-dependent protease HslV (heat shock protein HslV)
2513	 40.53	0	2966525..2967094	-	189	209696147	-	VSAL_I2741	-	putative cell division protein FtsN
2514	 42.86	+1	2967266..2968273	-	335	209696148	cytR	VSAL_I2742	-	HTH-type transcriptional repressor CytR
2515	 43.55	+1	2968477..2970678	-	733	209696149	priA	VSAL_I2743	-	primosomal protein N'
2516	 43.38	+1	2970934..2971152	+	72	209696150	rpmE	VSAL_I2744	-	50S ribosomal protein L31
2517	 42.39	0	2971385..2972632	+	415	209696151	maeB	VSAL_I2745	-	NADP-dependent malic enzyme
2518	 40.50	0	2972973..2973293	-	106	209696152	metJ	VSAL_I2746	-	Met repressor (Met regulon regulatory protein MetJ)
2519	 43.87	+1	2973481..2974647	+	388	209696153	metB	VSAL_I2747	-	cystathionine gamma-synthase (O-succinylhomoserin (thiol)-lyase)
2520	 42.09	0	2974647..2977067	+	806	209696154	metL	VSAL_I2748	-	bifunctional aspartokinase/homoserine dehydrogenase II
2521	 38.87	0	2977409..2978383	+	324	209696155	leuO	VSAL_I2749	-	probable HTH-type transcriptional regulator LeuO
2522	 39.54	0	2978631..2980466	+	611	209696156	-	VSAL_I2750	-	putative AMP-binding enzyme
2523	 37.78	0	2980853..2981167	+	104	209696157	-	VSAL_I2751	-	transposase
2524	 36.21	-1	2981164..2981511	+	115	209696158	-	VSAL_I2752	-	transposase
2525	 39.65	0	2981583..2983070	+	495	209696159	-	VSAL_I2753	-	transposase
2526	 43.25	+1	2983188..2985818	-	876	209696160	ppc	VSAL_I2754	-	phosphoenolpyruvate carboxylase
2527	 40.46	0	2985996..2987132	-	378	209696161	argE	VSAL_I2755	-	acetylornithine deacetylase
2528	 40.60	0	2987339..2988343	+	334	209696162	argC	VSAL_I2756	-	N-acetyl-gamma-glutamyl-phosphate reductase
2529	 42.55	+1	2988347..2989138	+	263	209696163	argB	VSAL_I2757	-	acetylglutamate kinase
2530	 42.24	0	2989206..2990417	+	403	209696164	argG	VSAL_I2758	-	argininosuccinate synthase
2531	 39.78	0	2990544..2992031	-	495	209696165	-	VSAL_I2759	-	transposase
2532	 36.21	-1	2992103..2992450	-	115	209696166	-	VSAL_I2760	-	transposase
2533	 37.78	0	2992447..2992761	-	104	209696167	-	VSAL_I2761	-	transposase
2534	 40.13	0	2992910..2993806	-	298	209696168	metF	VSAL_I2762	-	5,10-methylenetetrahydrofolate reductase
2535	 44.22	+1	2994101..2994550	-	149	209696169	rplI	VSAL_I2763	-	50S ribosomal subunit protein L9
2536	 44.74	+1	2994591..2994818	-	75	209696170	rpsR	VSAL_I2764	-	30S ribosomal subunit protein S18
2537	 44.22	+1	2994834..2995136	-	100	209696171	priB	VSAL_I2765	-	primosomal replication protein N
2538	 45.93	+2	2995145..2995525	-	126	209696172	rpsF	VSAL_I2766	-	30S ribosomal protein S6
2539	 43.28	+1	2995758..2996501	-	247	209696173	rlmB	VSAL_I2767	-	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
2540	 43.13	+1	2996572..2999073	-	833	209696174	rnr	VSAL_I2768	-	ribonuclease R
2541	 37.09	0	2999153..2999578	-	141	209696175	-	VSAL_I2769	-	putative transcriptional regulator
2542	 39.24	0	2999713..3000897	+	394	209696176	hmp	VSAL_I2770	-	flavohemoprotein
2543	 42.81	+1	3000998..3001630	-	210	209696177	motX	VSAL_I2771	-	sodium-type polar flagellar protein MotX
2544	 42.37	0	3001857..3003173	-	438	209696178	purA	VSAL_I2772	-	adenylosuccinate synthetase
2545	 41.94	0	3003352..3003537	-	61	209696179	-	VSAL_I2773	-	hypothetical protein
2546	 39.55	0	3003625..3004509	-	294	209696180	hflC	VSAL_I2774	-	HflC protein
2547	 40.44	0	3004512..3005735	-	407	209696181	hflK	VSAL_I2775	-	HflK protein
2548	 41.29	0	3005754..3007073	-	439	209696182	hflX	VSAL_I2776	-	HflX protein, putative GTP-binding protein
2549	 39.70	0	3007118..3007384	-	88	209696183	hfq	VSAL_I2777	-	RNA-binding protein Hfq
2550	 41.61	0	3007479..3008420	-	313	209696184	miaA	VSAL_I2778	-	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase
2551	 39.56	0	3008413..3010371	-	652	209696185	mutL	VSAL_I2779	-	DNA mismatch repair protein MutL
2552	 38.51	0	3010386..3012125	-	579	209696186	amiB	VSAL_I2780	-	N-acetylmuramoyl-L-alanine amidase
2553	 39.14	0	3012119..3012583	-	154	209696187	-	VSAL_I2781	-	hypothetical protein
2554	 40.75	0	3012804..3013922	+	372	209696188	-	VSAL_I2782	-	putative ferredoxin, 4Fe-4S binding protein
2555	 38.28	0	3015920..3016465	-	181	209696189	orn	VSAL_I2783	-	oligoribonuclease
2556	 39.58	0	3016564..3017619	+	351	209696190	-	VSAL_I2784	-	probable GTPase
2557	 40.62	0	3017678..3018541	+	287	209696191	psd	VSAL_I2785	-	phosphatidylserine decarboxylase proenzyme
2558	 45.07	+1	3018652..3019614	+	320	209696192	-	VSAL_I2786	-	integral membrane protein
2559	 42.25	0	3019655..3020641	-	328	209696193	-	VSAL_I2787	-	putative lysyl-tRNA synthetase
2560	 44.07	+1	3020995..3022848	+	617	209696194	-	VSAL_I2788	-	fumarate reductase complex, flavoprotein subunit
2561	 42.47	0	3022848..3023591	+	247	209696195	frdB	VSAL_I2789	-	fumarate reductase complex, iron-sulfur protein
2562	 41.67	0	3023594..3023977	+	127	209696196	frdC	VSAL_I2790	-	fumarate reductase complex, membrane anchor subunit C
2563	 43.25	+1	3023989..3024351	+	120	209696197	frdD	VSAL_I2791	-	fumarate reductase complex, membrane anchor subunit D
2564	 40.92	0	3024543..3025109	-	188	209696198	efp	VSAL_I2792	-	elongation factor P (EF-P)
2565	 40.18	0	3025142..3026164	+	340	209696199	-	VSAL_I2793	-	hypothetical protein
2566	 41.85	0	3026252..3027214	-	320	209696200	pfkA	VSAL_I2794	-	6-phosphofructokinase isozyme 1
2567	 41.94	0	3027433..3028338	-	301	209696201	fieF	VSAL_I2795	-	ferrous-iron efflux pump FieF
2568	 38.46	0	3028498..3029004	-	168	209696202	-	VSAL_I2796	-	putative periplasmic protein CpxP
2569	 39.47	0	3029199..3029882	+	227	209696203	cpxR	VSAL_I2797	-	transcriptional regulator, CpxR
2570	 41.68	0	3029888..3031276	+	462	209696204	cpxA	VSAL_I2798	-	sensor protein CpxA
2571	 42.29	0	3031372..3031851	+	159	209696205	yibK	VSAL_I2799	-	hypothetical tRNA/rRNA methyltransferase
2572	 45.99	+2	3031953..3032774	-	273	209696206	cysE	VSAL_I2800	-	serine acetyltransferase
2573	 43.51	+1	3032793..3033824	-	343	209696207	gpsA	VSAL_I2801	-	glycerol-3-phosphate dehydrogenase [NAD(P)+]
2574	 42.03	0	3033990..3034472	-	160	209696208	secB	VSAL_I2802	-	protein-export protein SecB
2575	 38.81	0	3034600..3035037	-	145	209696209	-	VSAL_I2803	-	hypothetical protein
2576	 40.05	0	3035259..3036404	+	381	209696210	-	VSAL_I2804	-	putative exported peptidase
2577	 42.06	0	3036485..3036988	-	167	209696211	fxsA	VSAL_I2805	-	protein FxsA
2578	 40.92	0	3037403..3038851	+	482	209696212	aspA	VSAL_I2806	-	aspartate ammonia-lyase(aspartase)
2579	 37.78	0	3039055..3039369	+	104	209696213	-	VSAL_I2807	-	transposase
2580	 35.92	-1	3039366..3039713	+	115	209696214	-	VSAL_I2808	-	transposase
2581	 41.81	0	3042841..3044715	+	624	209696215	dsbD	VSAL_I2811	-	thiol:disulfide interchange protein DsbD precursor
2582	 39.08	0	3044823..3045623	+	266	209696216	nagB	VSAL_I2812	-	glucosamine-6-phosphate deaminase
2583	 41.37	0	3046322..3048274	+	650	209696217	mtlA	VSAL_I2813	-	PTS system, mannitol-specific EIICBA component
2584	 39.77	0	3048353..3049501	+	382	209696218	mtlD	VSAL_I2814	-	mannitol-1-phosphate 5-dehydrogenase
2585	 36.91	0	3049551..3050081	+	176	209696219	mtlR	VSAL_I2815	-	mannitol operon repressor (mannitol repressor protein)
2586	 39.89	0	3050102..3051352	-	416	209696220	-	VSAL_I2816	-	MFS transporter
2587	 42.97	+1	3051377..3051874	-	165	209696221	-	VSAL_I2817	-	hypothetical protein
2588	 40.72	0	3051892..3052893	-	333	209696222	gap	VSAL_I2818	-	glyceraldehyde 3-phosphate dehydrogenase
2589	 37.88	0	3052910..3053239	-	109	209696223	arsR	VSAL_I2819	-	transcriptional regulator, ArsR family
2590	 37.34	0	3053485..3054483	+	332	209696224	-	VSAL_I2820	-	hypothetical protein
2591	 41.30	0	3054683..3055912	+	409	209696225	ndh	VSAL_I2821	-	NADH dehydrogenase
2592	 44.46	+1	3055981..3057813	-	610	209696226	glmS	VSAL_I2822	-	glucosamine--fructose-6-phosphate aminotransferase
2593	 39.48	0	3057933..3058697	-	254	209696227	-	VSAL_I2823	-	putative glucitol operon repressor
2594	 42.38	0	3058924..3059553	+	209	209696228	-	VSAL_I2824	-	transcriptional regulator, LuxR response regulator receiver
2595	 39.74	0	3059641..3060264	+	207	209696229	-	VSAL_I2825	-	integral membrane protein, MarC family
2596	 39.14	0	3060371..3061696	-	441	209696230	-	VSAL_I2826	-	transposase
2597	 39.47	0	3061810..3062151	+	113	209696231	-	VSAL_I2827	-	hypothetical protein
2598	 44.66	+1	3062162..3063865	+	567	209696232	-	VSAL_I2828	-	putative sodium/solute symporter
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.