IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2460	 38.14	0	2908590..2908901	-	103	209696094	-	VSAL_I2686	-	transposase
2461	 38.89	0	2909078..2909779	-	233	209696095	-	VSAL_I2687	-	hypothetical protein
2462	 38.59	0	2909780..2911339	-	519	209696096	exeA	VSAL_I2688	-	general secretion pathway protein A
2463	 40.60	0	2911481..2912704	+	407	209696097	cca	VSAL_I2689	-	tRNA nucleotidyltransferase (multifunctional CCA protein)
2464	 37.56	0	2912770..2913573	-	267	209696098	-	VSAL_I2690	-	putative undecaprenyl-diphosphatase (bacitracin resistance protein)
2465	 34.97	-1	2913582..2914070	-	162	209696099	-	VSAL_I2691	-	putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
2466	 40.11	0	2914067..2914420	-	117	209696100	folB	VSAL_I2692	-	dihydroneopterin aldolase
2467	 43.47	+1	2914566..2915147	+	193	209696101	-	VSAL_I2693	-	membrane protein
2468	 43.17	+1	2915221..2916237	-	338	209696102	gcp	VSAL_I2694	-	O-sialoglycoprotein endopeptidase (glycoprotease)
2469	 41.67	0	2916710..2917153	+	147	209696103	-	VSAL_I2695	-	hypothetical protein
2470	 41.17	0	2917267..2919027	+	586	209696104	dnaG	VSAL_I2696	-	DNA primase
2471	 40.43	0	2919125..2920957	+	610	209696105	rpoD	VSAL_I2697	-	RNA polymerase sigma factor RpoD (sigma-70)
2472	 39.94	0	2922389..2923933	+	514	209696106	-	VSAL_I2699	-	AMP-binding enzyme, putative long chain fatty acid Co-A ligase, acetyl-CoA synthetase
2473	 35.32	-1	2924023..2924424	+	133	209696107	-	VSAL_I2700	-	membrane protein
2474	 41.90	0	2924806..2926218	+	470	209696108	pykF	VSAL_I2701	-	pyruvate kinase I
2475	 37.42	0	2926447..2927106	+	219	209696109	-	VSAL_I2702	-	putative transcriptional regulator, GntR family
2476	 34.57	-1	2927161..2927322	-	53	209696110	-	VSAL_I2703	-	hypothetical protein
2477	 34.13	-1	2927417..2929306	-	629	209696111	-	VSAL_I2704	-	membrane associated GGDEF protein
2478	 39.60	0	2929412..2929906	-	164	209696112	ilvH	VSAL_I2705	-	acetolactate synthase isozyme III small subunit
2479	 40.42	0	2929906..2931627	-	573	209696113	ilvI	VSAL_I2706	-	acetolactate synthase isozyme III large subunit
2480	 39.72	0	2931788..2933275	-	495	209696114	-	VSAL_I2707	-	transposase
2481	 36.21	-1	2933347..2933694	-	115	209696115	-	VSAL_I2708	-	transposase
2482	 37.78	0	2933691..2934005	-	104	209696116	-	VSAL_I2709	-	transposase
2483	 41.60	0	2934250..2936124	+	624	209696117	argHA	VSAL_I2710	-	bifunctional protein ArgHA (argininosuccinate lyase)
2484	 35.98	-1	2936277..2936540	-	87	209696118	-	VSAL_I2711	-	hypothetical protein
2485	 43.56	+1	2936668..2938134	-	488	209696119	-	VSAL_I2712	-	dihydrolipoyl dehydrogenase (dihydrolipoamide dehydrogenase)
2486	 41.29	0	2938224..2938952	-	242	209696120	-	VSAL_I2713	-	hybrid peroxiredoxin (thioredoxin reductase)
2487	 42.02	0	2939132..2940040	+	302	209696121	oxyR	VSAL_I2714	-	transcriptional regulator OxyR, LysR family (hydrogen peroxide-inducible genes activator)
2488	 41.66	0	2940107..2942605	-	832	209696122	mrcA	VSAL_I2715	-	penicillin-binding protein 1A
2489	 38.54	0	2942744..2943742	+	332	209696123	pilM	VSAL_I2716	-	fimbrial assembly protein PilM
2490	 38.95	0	2943727..2944296	+	189	209696124	pilN	VSAL_I2717	-	fimbrial assembly protein PilN
2491	 37.11	0	2944289..2944870	+	193	209696125	pilO	VSAL_I2718	-	fimbrial assembly protein PilO
2492	 37.96	0	2944863..2945381	+	172	209696126	pilP	VSAL_I2719	-	fimbrial assembly protein PilP
2493	 36.05	-1	2946774..2947655	-	293	209696127	-	VSAL_I2721	-	transposase
2494	 42.77	+1	2948361..2948879	+	172	209696128	aroK	VSAL_I2722	-	shikimate kinase 1
2495	 41.60	0	2948918..2950006	+	362	209696129	aroB	VSAL_I2723	-	3-dehydroquinate synthase
2496	 37.22	0	2950010..2951527	+	505	209696130	-	VSAL_I2724	-	putative cell division protein
2497	 38.51	0	2951599..2952429	+	276	209696131	dam	VSAL_I2725	-	DNA adenine methylase
2498	 41.45	0	2952552..2953229	+	225	209696132	rpe	VSAL_I2726	-	ribulose-phosphate 3-epimerase
2499	 41.52	0	2953235..2953918	+	227	209696133	gph	VSAL_I2727	-	phosphoglycolate phosphatase
2500	 43.36	+1	2954038..2955054	+	338	209696134	trpS	VSAL_I2728	-	tryptophanyl-tRNA synthetase
2501	 36.79	0	2955151..2955729	+	192	209696135	trpG	VSAL_I2729	-	anthranilate synthase component II (glutamine amido transferase)
2502	 37.78	0	2955955..2956269	+	104	209696136	-	VSAL_I2730	-	transposase
2503	 36.49	0	2956266..2956613	+	115	209696137	-	VSAL_I2731	-	transposase
2504	 39.78	0	2956685..2958172	+	495	209696138	-	VSAL_I2732	-	transposase
2505	 44.12	+1	2958360..2959574	+	404	209696139	aruC	VSAL_I2733	-	acetylornithine aminotransferase/succinylornithine transaminase
2506	 41.08	0	2959736..2960755	+	339	209696140	astA	VSAL_I2734	-	arginine N-succinyltransferase
2507	 46.23	+2	2960768..2962225	+	485	209696141	astD	VSAL_I2735	-	succinylglutamic semialdehyde dehydrogenase
2508	 38.74	0	2962238..2963032	+	264	209696142	-	VSAL_I2736	-	hypothetical protein
2509	 40.44	0	2963117..2963749	-	210	209696143	crp	VSAL_I2737	-	cyclic AMP receptor protein
2510	 42.29	0	2963995..2964396	+	133	209696144	-	VSAL_I2738	-	OsmC-like protein
2511	 42.25	0	2964469..2965803	-	444	209696145	hslU	VSAL_I2739	-	ATP-dependent hsl protease ATP-binding subunit HslU (heat shock protein HslU)
2512	 42.00	0	2965816..2966346	-	176	209696146	hslV	VSAL_I2740	-	ATP-dependent protease HslV (heat shock protein HslV)
2513	 40.53	0	2966525..2967094	-	189	209696147	-	VSAL_I2741	-	putative cell division protein FtsN
2514	 42.86	+1	2967266..2968273	-	335	209696148	cytR	VSAL_I2742	-	HTH-type transcriptional repressor CytR
2515	 43.55	+1	2968477..2970678	-	733	209696149	priA	VSAL_I2743	-	primosomal protein N'
2516	 43.38	+1	2970934..2971152	+	72	209696150	rpmE	VSAL_I2744	-	50S ribosomal protein L31
2517	 42.39	0	2971385..2972632	+	415	209696151	maeB	VSAL_I2745	-	NADP-dependent malic enzyme
2518	 40.50	0	2972973..2973293	-	106	209696152	metJ	VSAL_I2746	-	Met repressor (Met regulon regulatory protein MetJ)
2519	 43.87	+1	2973481..2974647	+	388	209696153	metB	VSAL_I2747	-	cystathionine gamma-synthase (O-succinylhomoserin (thiol)-lyase)
2520	 42.09	0	2974647..2977067	+	806	209696154	metL	VSAL_I2748	-	bifunctional aspartokinase/homoserine dehydrogenase II
2521	 38.87	0	2977409..2978383	+	324	209696155	leuO	VSAL_I2749	-	probable HTH-type transcriptional regulator LeuO
2522	 39.54	0	2978631..2980466	+	611	209696156	-	VSAL_I2750	-	putative AMP-binding enzyme
2523	 37.78	0	2980853..2981167	+	104	209696157	-	VSAL_I2751	-	transposase
2524	 36.21	-1	2981164..2981511	+	115	209696158	-	VSAL_I2752	-	transposase
2525	 39.65	0	2981583..2983070	+	495	209696159	-	VSAL_I2753	-	transposase
2526	 43.25	+1	2983188..2985818	-	876	209696160	ppc	VSAL_I2754	-	phosphoenolpyruvate carboxylase
2527	 40.46	0	2985996..2987132	-	378	209696161	argE	VSAL_I2755	-	acetylornithine deacetylase
2528	 40.60	0	2987339..2988343	+	334	209696162	argC	VSAL_I2756	-	N-acetyl-gamma-glutamyl-phosphate reductase
2529	 42.55	+1	2988347..2989138	+	263	209696163	argB	VSAL_I2757	-	acetylglutamate kinase
2530	 42.24	0	2989206..2990417	+	403	209696164	argG	VSAL_I2758	-	argininosuccinate synthase
2531	 39.78	0	2990544..2992031	-	495	209696165	-	VSAL_I2759	-	transposase
2532	 36.21	-1	2992103..2992450	-	115	209696166	-	VSAL_I2760	-	transposase
2533	 37.78	0	2992447..2992761	-	104	209696167	-	VSAL_I2761	-	transposase
2534	 40.13	0	2992910..2993806	-	298	209696168	metF	VSAL_I2762	-	5,10-methylenetetrahydrofolate reductase
2535	 44.22	+1	2994101..2994550	-	149	209696169	rplI	VSAL_I2763	-	50S ribosomal subunit protein L9
2536	 44.74	+1	2994591..2994818	-	75	209696170	rpsR	VSAL_I2764	-	30S ribosomal subunit protein S18
2537	 44.22	+1	2994834..2995136	-	100	209696171	priB	VSAL_I2765	-	primosomal replication protein N
2538	 45.93	+2	2995145..2995525	-	126	209696172	rpsF	VSAL_I2766	-	30S ribosomal protein S6
2539	 43.28	+1	2995758..2996501	-	247	209696173	rlmB	VSAL_I2767	-	23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
2540	 43.13	+1	2996572..2999073	-	833	209696174	rnr	VSAL_I2768	-	ribonuclease R
2541	 37.09	0	2999153..2999578	-	141	209696175	-	VSAL_I2769	-	putative transcriptional regulator
2542	 39.24	0	2999713..3000897	+	394	209696176	hmp	VSAL_I2770	-	flavohemoprotein
2543	 42.81	+1	3000998..3001630	-	210	209696177	motX	VSAL_I2771	-	sodium-type polar flagellar protein MotX
2544	 42.37	0	3001857..3003173	-	438	209696178	purA	VSAL_I2772	-	adenylosuccinate synthetase
2545	 41.94	0	3003352..3003537	-	61	209696179	-	VSAL_I2773	-	hypothetical protein
2546	 39.55	0	3003625..3004509	-	294	209696180	hflC	VSAL_I2774	-	HflC protein
2547	 40.44	0	3004512..3005735	-	407	209696181	hflK	VSAL_I2775	-	HflK protein
2548	 41.29	0	3005754..3007073	-	439	209696182	hflX	VSAL_I2776	-	HflX protein, putative GTP-binding protein
2549	 39.70	0	3007118..3007384	-	88	209696183	hfq	VSAL_I2777	-	RNA-binding protein Hfq
2550	 41.61	0	3007479..3008420	-	313	209696184	miaA	VSAL_I2778	-	tRNA delta-2-isopentenylpyrophosphate (IPP) transferase
2551	 39.56	0	3008413..3010371	-	652	209696185	mutL	VSAL_I2779	-	DNA mismatch repair protein MutL
2552	 38.51	0	3010386..3012125	-	579	209696186	amiB	VSAL_I2780	-	N-acetylmuramoyl-L-alanine amidase
2553	 39.14	0	3012119..3012583	-	154	209696187	-	VSAL_I2781	-	hypothetical protein
2554	 40.75	0	3012804..3013922	+	372	209696188	-	VSAL_I2782	-	putative ferredoxin, 4Fe-4S binding protein
2555	 38.28	0	3015920..3016465	-	181	209696189	orn	VSAL_I2783	-	oligoribonuclease
2556	 39.58	0	3016564..3017619	+	351	209696190	-	VSAL_I2784	-	probable GTPase
2557	 40.62	0	3017678..3018541	+	287	209696191	psd	VSAL_I2785	-	phosphatidylserine decarboxylase proenzyme
2558	 45.07	+1	3018652..3019614	+	320	209696192	-	VSAL_I2786	-	integral membrane protein
2559	 42.25	0	3019655..3020641	-	328	209696193	-	VSAL_I2787	-	putative lysyl-tRNA synthetase
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.