IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2334	 34.84	-1	2731097..2731627	-	176	209695968	-	VSAL_I2550	-	putative hemerythrin
2335	 37.93	0	2731716..2732390	-	224	209695969	ung	VSAL_I2551	-	uracil-DNA glycosylase (UDG)
2336	 40.28	0	2732391..2733239	-	282	209695970	nfo	VSAL_I2552	-	endonuclease IV
2337	 40.74	0	2733601..2733978	+	125	209695971	grcA	VSAL_I2553	-	autonomous glycyl radical cofactor
2338	 39.02	0	2734134..2735417	-	427	209695972	thrC	VSAL_I2554	-	threonine synthase
2339	 40.54	0	2735414..2736370	-	318	209695973	thrB	VSAL_I2555	-	homoserine kinase
2340	 40.20	0	2736372..2738831	-	819	209695974	thrA	VSAL_I2556	-	bifunctional aspartokinase/homoserine dehydrogenase I
2341	 40.25	0	2739226..2739702	-	158	209695975	-	VSAL_I2557	-	demethylmenaquinone methyltransferase
2342	 40.69	0	2740146..2740865	+	239	209695976	arcA	VSAL_I2558	-	response regulator, aerobic respiration control protein ArcA
2343	 37.81	0	2740940..2741386	-	148	209695977	-	VSAL_I2559	-	putative lipoprotein
2344	 36.71	0	2741396..2743762	-	788	209695978	arcB	VSAL_I2560	-	response regulator, aerobic respiration control sensor protein ArcB
2345	 41.42	0	2745319..2749866	+	1515	209695979	gltB	VSAL_I2562	-	glutamate synthase, large subunit
2346	 41.28	0	2749866..2751338	+	490	209695980	-	VSAL_I2563	-	glutamate synthase, small subunit
2347	 31.94	-2	2751503..2751934	+	143	209695981	-	VSAL_I2564	-	putative lipoprotein
2348	 39.51	0	2757664..2758359	+	231	209695982	mtnN	VSAL_I2565	-	MTA/SAH nucleosidase (5'-methylthioadenosin nucleosidase) (S-adenosylhomocysteine nucleosidase)
2349	 36.90	0	2758425..2759378	+	317	209695983	-	VSAL_I2566	-	putative cobalamin biosynthesis protein
2350	 41.99	0	2759421..2760032	+	203	209695984	-	VSAL_I2567	-	inner membrane protein
2351	 38.60	0	2760222..2761532	+	436	209695985	-	VSAL_I2568	-	putative membrane associated peptidase
2352	 38.45	0	2761549..2764677	-	1042	209695986	-	VSAL_I2569	-	integral membrane protein, putative multidrug resistance protein
2353	 38.81	0	2764687..2765799	-	370	209695987	-	VSAL_I2570	-	membrane protein, putative periplasmic component of a bacterial drug efflux pump
2354	 36.55	0	2765930..2766271	-	113	209695988	-	VSAL_I2571	-	putative iron-sulphur cluster biosynthesis protein
2355	 42.98	+1	2766507..2767802	+	431	209695989	hemL	VSAL_I2572	-	glutamate-1-semialdehyde 2,1-aminomutase
2356	 37.66	0	2768062..2769147	+	361	209695990	-	VSAL_I2573	-	membrane protein
2357	 37.48	0	2769232..2770293	+	353	209695991	rsmC	VSAL_I2574	-	ribosomal RNA small subunit methyltransferase C (16S rRNA m2G120 methyltransferase)
2358	 37.23	0	2770458..2773841	+	1127	209695992	chiS	VSAL_I2575	-	chitin degradation sensor protein
2359	 40.43	0	2776248..2777234	+	328	209695993	-	VSAL_I2577	-	ABC-type [(GlcNAc)2] transporter, permease protein
2360	 42.79	+1	2777237..2778262	+	341	209695994	-	VSAL_I2578	-	ABC-type [(GlcNAc)2] transporter, permease protein
2361	 40.85	0	2778264..2779247	+	327	209695995	-	VSAL_I2579	-	ABC-type [(GlcNAc)2] transporter, ATP-binding protein
2362	 40.86	0	2779271..2780266	+	331	209695996	-	VSAL_I2580	-	ABC-type [(GlcNAc)2] transporter, ATP-binding protein
2363	 37.73	0	2780318..2782045	+	575	209695997	-	VSAL_I2581	-	putative chitobiase (exoglucosidase)
2364	 42.12	0	2782038..2782913	+	291	209695998	-	VSAL_I2582	-	glucosamine kinase
2365	 40.74	0	2782932..2784740	+	602	209695999	exoI	VSAL_I2583	-	beta-hexosaminidase (beta-N-acetylglucosaminidase)
2366	 42.25	0	2784878..2787166	+	762	209696000	chbP	VSAL_I2584	-	chitobiose phosphorylase (glycosyl transferase)
2367	 37.93	0	2787270..2788682	+	470	209696001	-	VSAL_I2585	-	phosphoglucomutase/phosphomannomutase
2368	 38.52	0	2788775..2789815	-	346	209696002	fbpC	VSAL_I2586	-	iron(III) ABC transporter, ATP-binding protein
2369	 38.73	0	2789815..2791446	-	543	209696003	fbpB	VSAL_I2587	-	iron(III) ABC transporter, permease protein
2370	 38.86	0	2791514..2792527	-	337	209696004	fbpA	VSAL_I2588	-	iron(III) ABC transporter, periplasmic iron-compound-binding protein
2371	 40.57	0	2792706..2793935	-	409	209696005	amtB	VSAL_I2589	-	ammonium transporter
2372	 39.53	0	2793956..2794294	-	112	209696006	glnB	VSAL_I2590	-	nitrogen regulatory protein P-II
2373	 35.50	-1	2794462..2794830	-	122	209696007	-	VSAL_I2591	-	hypothetical protein
2374	 34.21	-1	2794974..2796119	+	381	209696008	-	VSAL_I2592	-	carbohydrate diacid regulator (sugar diacid regulator)
2375	 44.23	+1	2796247..2797512	+	421	209696009	-	VSAL_I2593	-	gluconate permease
2376	 41.14	0	2797525..2798664	+	379	209696010	glxK	VSAL_I2594	-	glycerate kinase
2377	 42.02	0	2798754..2801342	-	862	209696011	acnB	VSAL_I2595	-	aconitate hydratase 2 (citrate hydro-lyase 2)
2378	 36.05	-1	2801617..2802498	-	293	209696012	-	VSAL_I2597	-	transposase
2379	 39.65	0	2804916..2806403	-	495	209696013	-	VSAL_I2598	-	transposase
2380	 36.21	-1	2806475..2806822	-	115	209696014	-	VSAL_I2599	-	transposase
2381	 37.78	0	2806819..2807133	-	104	209696015	-	VSAL_I2600	-	transposase
2382	 39.77	0	2815769..2818144	-	791	209696016	mrcB	VSAL_I2602	-	penicillin-binding protein transpeptidase
2383	 39.54	0	2818175..2820640	-	821	209696017	hrpB	VSAL_I2603	-	ATP-dependent helicase HrpB
2384	 37.71	0	2820700..2821407	+	235	209696018	sfsA	VSAL_I2604	-	sugar fermentation stimulation protein A
2385	 40.98	0	2821552..2822022	+	156	209696019	dksA	VSAL_I2605	-	DnaK suppressor protein
2386	 40.20	0	2823105..2824430	+	441	209696020	pcnB	VSAL_I2607	-	poly(A) polymerase (plasmid copy number protein)
2387	 42.18	0	2824427..2824912	+	161	209696021	folK	VSAL_I2608	-	2-amino-4-hydroxy-6-hydroxymethyl-dihydropterid ine diphosphokinase
2388	 41.26	0	2824935..2825729	+	264	209696022	panB	VSAL_I2609	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2389	 40.47	0	2825739..2826635	+	298	209696023	panC	VSAL_I2610	-	pantoate--beta-alanine ligase
2390	 39.78	0	2826738..2828225	-	495	209696024	-	VSAL_I2611	-	transposase
2391	 37.78	0	2828634..2828948	-	104	209696025	-	VSAL_I2613	-	transposase
2392	 36.32	-1	2829036..2829806	-	256	209696026	-	VSAL_I2614	-	ABC transporter, integral membrane protein
2393	 39.11	0	2829806..2830723	-	305	209696027	-	VSAL_I2615	-	ABC transporter, ATP-binding protein
2394	 37.27	0	2830820..2831479	+	219	209696028	can	VSAL_I2616	-	carbonic anhydrase 2
2395	 36.90	0	2831570..2831821	-	83	209696029	-	VSAL_I2617	-	hypothetical protein
2396	 36.35	0	2832308..2832838	-	176	209696030	hpt	VSAL_I2618	-	hypoxanthine phosphoribosyltransferase
2397	 36.96	0	2833164..2833769	+	201	209696031	litR	VSAL_I2619	-	HTH-type luminescence regulator LitR
2398	 37.78	0	2835691..2836005	-	104	209696032	-	VSAL_I2622	-	transposase
2399	 42.23	0	2836169..2837596	-	475	209696033	lpdA	VSAL_I2623	-	dihydrolipoamide dehydrogenase
2400	 43.13	+1	2839473..2842136	-	887	209696034	aceE	VSAL_I2625	-	pyruvate dehydrogenase E1 component
2401	 42.54	0	2842192..2842962	-	256	209696035	pdhR	VSAL_I2626	-	pyruvate dehydrogenase complex repressor
2402	 42.39	0	2843249..2843800	-	183	209696036	ampD	VSAL_I2627	-	AmpD protein (N-acetylmuramoyl-L-alanine amidase)
2403	 43.11	+1	2843902..2844801	+	299	209696037	nadC	VSAL_I2628	-	nicotinate-nucleotide pyrophosphorylase
2404	 38.61	0	2845150..2845566	+	138	209696038	pilA	VSAL_I2629	-	type IV pilus subunit PilA
2405	 42.26	0	2845569..2847260	+	563	209696039	pilB	VSAL_I2630	-	type IV pilus assembly protein PilB
2406	 39.86	0	2848634..2849521	+	295	209696040	pilD	VSAL_I2632	-	type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD) (leader peptidase PilD)
2407	 36.06	-1	2849518..2850141	+	207	209696041	coaE	VSAL_I2633	-	dephospho-CoA kinase (dephosphocoenzyme a kinase)
2408	 39.36	0	2850150..2850896	+	248	209696042	-	VSAL_I2634	-	hypothetical protein
2409	 40.95	0	2850904..2851113	+	69	209696043	-	VSAL_I2635	-	zinc-binding protein
2410	 37.31	0	2851181..2851582	-	133	209696044	mutT	VSAL_I2636	-	mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase)
2411	 38.47	0	2851682..2854405	-	907	209696045	-	VSAL_I2637	-	preprotein translocase SecA subunit
2412	 39.74	0	2854719..2855186	+	155	209696046	-	VSAL_I2638	-	hypothetical protein
2413	 40.85	0	2855249..2856166	-	305	209696047	lpxC	VSAL_I2639	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2414	 44.42	+1	2856272..2857507	-	411	209696048	ftsZ	VSAL_I2640	-	cell division protein FtsZ
2415	 40.93	0	2857540..2858802	-	420	209696049	ftsA	VSAL_I2641	-	cell division protein FtsA
2416	 37.48	0	2858804..2859574	-	256	209696050	ftsQ	VSAL_I2642	-	cell division protein FtsQ
2417	 40.71	0	2859781..2861244	-	487	209696051	murC	VSAL_I2643	-	UDP-N-acetylmuramate--L-alanine ligase
2418	 43.47	+1	2861263..2862327	-	354	209696052	murG	VSAL_I2644	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(penta peptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
2419	 40.07	0	2862311..2863513	-	400	209696053	ftsW	VSAL_I2645	-	cell division protein FtsW
2420	 40.86	0	2863516..2864844	-	442	209696054	murD	VSAL_I2646	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
2421	 40.54	0	2864846..2865928	-	360	209696055	mraY	VSAL_I2647	-	phospho-N-acetylmuramoyl-pentapeptide-transfera se
2422	 40.62	0	2865928..2867286	-	452	209696056	murF	VSAL_I2648	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-ala nine ligase
2423	 41.50	0	2867283..2868764	-	493	209696057	murE	VSAL_I2649	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia minopimelate ligase
2424	 43.28	+1	2868772..2870511	-	579	209696058	ftsI	VSAL_I2650	-	peptidoglycan synthetase FtsI precursor (peptidoglycan glycosyltransferase 3) (penicillin-binding protein 3)
2425	 37.00	0	2870508..2870834	-	108	209696059	ftsL	VSAL_I2651	-	cell division protein FtsL
2426	 40.69	0	2870831..2871781	-	316	209696060	mraW	VSAL_I2652	-	S-adenosyl-methyltransferase MraW
2427	 41.67	0	2872413..2873276	-	287	209696061	-	VSAL_I2653	-	putative tetrapyrrole methyltransferase
2428	 40.12	0	2873413..2875224	+	603	209696062	-	VSAL_I2654	-	putative lipoprotein LppC
2429	 38.44	0	2875205..2875576	+	123	209696063	-	VSAL_I2655	-	hypothetical protein
2430	 41.46	0	2875580..2876170	+	196	209696064	diaA	VSAL_I2656	-	DnaA initiator-associating protein DiaA
2431	 39.29	0	2876176..2876763	+	195	209696065	-	VSAL_I2657	-	putative lipoprotein
2432	 41.01	0	2876810..2877265	-	151	209696066	sspB	VSAL_I2658	-	stringent starvation protein B
2433	 39.94	0	2877265..2877930	-	221	209696067	sspA	VSAL_I2659	-	stringent starvation protein A
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.