version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2308 39.34 0 2706343..2707308 - 321 209695942 era VSAL_I2524 - GTP-binding protein era 2309 41.52 0 2707308..2707979 - 223 209695943 rnc VSAL_I2525 - ribonuclease III (RNase III) 2310 41.42 0 2707990..2708892 - 300 209695944 lepB VSAL_I2526 - signal peptidase I (leader peptidase I) 2311 40.41 0 2709013..2710806 - 597 209695945 lepA VSAL_I2527 - GTP-binding protein LepA 2312 37.65 0 2710896..2711381 - 161 209695946 - VSAL_I2528 - sigma-E factor regulatory protein RseC 2313 39.88 0 2711386..2712363 - 325 209695947 - VSAL_I2529 - sigma-E factor regulatory protein RseB precursor 2314 40.29 0 2712364..2712981 - 205 209695948 - VSAL_I2530 - sigma-E factor negative regulatory protein 2315 41.28 0 2713011..2713589 - 192 209695949 rpoE VSAL_I2531 - RNA polymerase sigma-E factor 2316 42.30 0 2713911..2715527 + 538 209695950 nadB VSAL_I2532 - L-aspartate oxidase (quinolinate synthetase B) 2317 34.41 -1 2715627..2715998 - 123 209695951 - VSAL_I2533 - hypothetical protein 2318 39.85 0 2715994..2716254 - 86 209695952 - VSAL_I2534 - hypothetical protein 2319 39.29 0 2716433..2717389 + 318 209695953 - VSAL_I2535 - hypothetical protein 2320 38.24 0 2717851..2718054 + 67 209695954 - VSAL_I2536 - hypothetical protein 2321 40.05 0 2718141..2719346 - 401 209695955 - VSAL_I2537 - putative monooxygenase 2322 40.25 0 2719349..2720548 - 399 209695956 ubiH VSAL_I2538 - 2-octaprenyl-6-methoxyphenol hydroxylase 2323 40.00 0 2720548..2721117 - 189 209695957 - VSAL_I2539 - hypothetical protein 2324 38.60 0 2721355..2721696 + 113 209695958 - VSAL_I2540 - putative cell division protein ZapA 2325 39.86 0 2721911..2722492 + 193 209695959 - VSAL_I2541 - putative 5-formyltetrahydrofolate cyclo-ligase 2326 41.25 0 2722637..2723293 + 218 209695960 rpiA VSAL_I2542 - ribose-5-phosphate isomerase A (phosphoriboisomerase A) 2327 35.94 -1 2723481..2724362 + 293 209695961 - VSAL_I2543 - transposase 2328 40.89 0 2724503..2725732 + 409 209695962 serA VSAL_I2544 - D-3-phosphoglycerate dehydrogenase 2329 37.07 0 2725835..2726530 - 231 209695963 - VSAL_I2545 - hypothetical protein 2330 38.91 0 2726695..2727555 - 286 209695964 mscS VSAL_I2546 - small-conductance mechanosensitive channel 2331 36.03 -1 2727812..2728591 - 259 209695965 - VSAL_I2547 - hypothetical protein 2332 41.07 0 2728705..2730138 - 477 209695966 - VSAL_I2548 - putative amino-acid transporter 2333 38.62 0 2730866..2731054 + 62 209695967 - VSAL_I2549 - hypothetical protein 2334 34.84 -1 2731097..2731627 - 176 209695968 - VSAL_I2550 - putative hemerythrin 2335 37.93 0 2731716..2732390 - 224 209695969 ung VSAL_I2551 - uracil-DNA glycosylase (UDG) 2336 40.28 0 2732391..2733239 - 282 209695970 nfo VSAL_I2552 - endonuclease IV 2337 40.74 0 2733601..2733978 + 125 209695971 grcA VSAL_I2553 - autonomous glycyl radical cofactor 2338 39.02 0 2734134..2735417 - 427 209695972 thrC VSAL_I2554 - threonine synthase 2339 40.54 0 2735414..2736370 - 318 209695973 thrB VSAL_I2555 - homoserine kinase 2340 40.20 0 2736372..2738831 - 819 209695974 thrA VSAL_I2556 - bifunctional aspartokinase/homoserine dehydrogenase I 2341 40.25 0 2739226..2739702 - 158 209695975 - VSAL_I2557 - demethylmenaquinone methyltransferase 2342 40.69 0 2740146..2740865 + 239 209695976 arcA VSAL_I2558 - response regulator, aerobic respiration control protein ArcA 2343 37.81 0 2740940..2741386 - 148 209695977 - VSAL_I2559 - putative lipoprotein 2344 36.71 0 2741396..2743762 - 788 209695978 arcB VSAL_I2560 - response regulator, aerobic respiration control sensor protein ArcB 2345 41.42 0 2745319..2749866 + 1515 209695979 gltB VSAL_I2562 - glutamate synthase, large subunit 2346 41.28 0 2749866..2751338 + 490 209695980 - VSAL_I2563 - glutamate synthase, small subunit 2347 31.94 -2 2751503..2751934 + 143 209695981 - VSAL_I2564 - putative lipoprotein 2348 39.51 0 2757664..2758359 + 231 209695982 mtnN VSAL_I2565 - MTA/SAH nucleosidase (5'-methylthioadenosin nucleosidase) (S-adenosylhomocysteine nucleosidase) 2349 36.90 0 2758425..2759378 + 317 209695983 - VSAL_I2566 - putative cobalamin biosynthesis protein 2350 41.99 0 2759421..2760032 + 203 209695984 - VSAL_I2567 - inner membrane protein 2351 38.60 0 2760222..2761532 + 436 209695985 - VSAL_I2568 - putative membrane associated peptidase 2352 38.45 0 2761549..2764677 - 1042 209695986 - VSAL_I2569 - integral membrane protein, putative multidrug resistance protein 2353 38.81 0 2764687..2765799 - 370 209695987 - VSAL_I2570 - membrane protein, putative periplasmic component of a bacterial drug efflux pump 2354 36.55 0 2765930..2766271 - 113 209695988 - VSAL_I2571 - putative iron-sulphur cluster biosynthesis protein 2355 42.98 +1 2766507..2767802 + 431 209695989 hemL VSAL_I2572 - glutamate-1-semialdehyde 2,1-aminomutase 2356 37.66 0 2768062..2769147 + 361 209695990 - VSAL_I2573 - membrane protein 2357 37.48 0 2769232..2770293 + 353 209695991 rsmC VSAL_I2574 - ribosomal RNA small subunit methyltransferase C (16S rRNA m2G120 methyltransferase) 2358 37.23 0 2770458..2773841 + 1127 209695992 chiS VSAL_I2575 - chitin degradation sensor protein 2359 40.43 0 2776248..2777234 + 328 209695993 - VSAL_I2577 - ABC-type [(GlcNAc)2] transporter, permease protein 2360 42.79 +1 2777237..2778262 + 341 209695994 - VSAL_I2578 - ABC-type [(GlcNAc)2] transporter, permease protein 2361 40.85 0 2778264..2779247 + 327 209695995 - VSAL_I2579 - ABC-type [(GlcNAc)2] transporter, ATP-binding protein 2362 40.86 0 2779271..2780266 + 331 209695996 - VSAL_I2580 - ABC-type [(GlcNAc)2] transporter, ATP-binding protein 2363 37.73 0 2780318..2782045 + 575 209695997 - VSAL_I2581 - putative chitobiase (exoglucosidase) 2364 42.12 0 2782038..2782913 + 291 209695998 - VSAL_I2582 - glucosamine kinase 2365 40.74 0 2782932..2784740 + 602 209695999 exoI VSAL_I2583 - beta-hexosaminidase (beta-N-acetylglucosaminidase) 2366 42.25 0 2784878..2787166 + 762 209696000 chbP VSAL_I2584 - chitobiose phosphorylase (glycosyl transferase) 2367 37.93 0 2787270..2788682 + 470 209696001 - VSAL_I2585 - phosphoglucomutase/phosphomannomutase 2368 38.52 0 2788775..2789815 - 346 209696002 fbpC VSAL_I2586 - iron(III) ABC transporter, ATP-binding protein 2369 38.73 0 2789815..2791446 - 543 209696003 fbpB VSAL_I2587 - iron(III) ABC transporter, permease protein 2370 38.86 0 2791514..2792527 - 337 209696004 fbpA VSAL_I2588 - iron(III) ABC transporter, periplasmic iron-compound-binding protein 2371 40.57 0 2792706..2793935 - 409 209696005 amtB VSAL_I2589 - ammonium transporter 2372 39.53 0 2793956..2794294 - 112 209696006 glnB VSAL_I2590 - nitrogen regulatory protein P-II 2373 35.50 -1 2794462..2794830 - 122 209696007 - VSAL_I2591 - hypothetical protein 2374 34.21 -1 2794974..2796119 + 381 209696008 - VSAL_I2592 - carbohydrate diacid regulator (sugar diacid regulator) 2375 44.23 +1 2796247..2797512 + 421 209696009 - VSAL_I2593 - gluconate permease 2376 41.14 0 2797525..2798664 + 379 209696010 glxK VSAL_I2594 - glycerate kinase 2377 42.02 0 2798754..2801342 - 862 209696011 acnB VSAL_I2595 - aconitate hydratase 2 (citrate hydro-lyase 2) 2378 36.05 -1 2801617..2802498 - 293 209696012 - VSAL_I2597 - transposase 2379 39.65 0 2804916..2806403 - 495 209696013 - VSAL_I2598 - transposase 2380 36.21 -1 2806475..2806822 - 115 209696014 - VSAL_I2599 - transposase 2381 37.78 0 2806819..2807133 - 104 209696015 - VSAL_I2600 - transposase 2382 39.77 0 2815769..2818144 - 791 209696016 mrcB VSAL_I2602 - penicillin-binding protein transpeptidase 2383 39.54 0 2818175..2820640 - 821 209696017 hrpB VSAL_I2603 - ATP-dependent helicase HrpB 2384 37.71 0 2820700..2821407 + 235 209696018 sfsA VSAL_I2604 - sugar fermentation stimulation protein A 2385 40.98 0 2821552..2822022 + 156 209696019 dksA VSAL_I2605 - DnaK suppressor protein 2386 40.20 0 2823105..2824430 + 441 209696020 pcnB VSAL_I2607 - poly(A) polymerase (plasmid copy number protein) 2387 42.18 0 2824427..2824912 + 161 209696021 folK VSAL_I2608 - 2-amino-4-hydroxy-6-hydroxymethyl-dihydropterid ine diphosphokinase 2388 41.26 0 2824935..2825729 + 264 209696022 panB VSAL_I2609 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 2389 40.47 0 2825739..2826635 + 298 209696023 panC VSAL_I2610 - pantoate--beta-alanine ligase 2390 39.78 0 2826738..2828225 - 495 209696024 - VSAL_I2611 - transposase 2391 37.78 0 2828634..2828948 - 104 209696025 - VSAL_I2613 - transposase 2392 36.32 -1 2829036..2829806 - 256 209696026 - VSAL_I2614 - ABC transporter, integral membrane protein 2393 39.11 0 2829806..2830723 - 305 209696027 - VSAL_I2615 - ABC transporter, ATP-binding protein 2394 37.27 0 2830820..2831479 + 219 209696028 can VSAL_I2616 - carbonic anhydrase 2 2395 36.90 0 2831570..2831821 - 83 209696029 - VSAL_I2617 - hypothetical protein 2396 36.35 0 2832308..2832838 - 176 209696030 hpt VSAL_I2618 - hypoxanthine phosphoribosyltransferase 2397 36.96 0 2833164..2833769 + 201 209696031 litR VSAL_I2619 - HTH-type luminescence regulator LitR 2398 37.78 0 2835691..2836005 - 104 209696032 - VSAL_I2622 - transposase 2399 42.23 0 2836169..2837596 - 475 209696033 lpdA VSAL_I2623 - dihydrolipoamide dehydrogenase 2400 43.13 +1 2839473..2842136 - 887 209696034 aceE VSAL_I2625 - pyruvate dehydrogenase E1 component 2401 42.54 0 2842192..2842962 - 256 209696035 pdhR VSAL_I2626 - pyruvate dehydrogenase complex repressor 2402 42.39 0 2843249..2843800 - 183 209696036 ampD VSAL_I2627 - AmpD protein (N-acetylmuramoyl-L-alanine amidase) 2403 43.11 +1 2843902..2844801 + 299 209696037 nadC VSAL_I2628 - nicotinate-nucleotide pyrophosphorylase 2404 38.61 0 2845150..2845566 + 138 209696038 pilA VSAL_I2629 - type IV pilus subunit PilA 2405 42.26 0 2845569..2847260 + 563 209696039 pilB VSAL_I2630 - type IV pilus assembly protein PilB 2406 39.86 0 2848634..2849521 + 295 209696040 pilD VSAL_I2632 - type IV prepilin peptidase PilD (type IV-A prepilin peptidase PilD) (leader peptidase PilD) 2407 36.06 -1 2849518..2850141 + 207 209696041 coaE VSAL_I2633 - dephospho-CoA kinase (dephosphocoenzyme a kinase) 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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