IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2302	 41.78	0	2697759..2699996	-	745	209695936	relA	VSAL_I2518	-	GTP pyrophosphokinase
2303	 38.42	0	2700070..2701386	-	438	209695937	rumA	VSAL_I2519	-	23S rRNA (uracil-5-)-methyltransferase RumA
2304	 38.92	0	2701550..2704339	+	929	209695938	varS	VSAL_I2520	-	response regulator, histidine kinase VarS
2305	 43.57	+1	2704391..2704771	-	126	209695939	acpS	VSAL_I2521	-	holo-[acyl-carrier protein] synthase
2306	 42.49	0	2704771..2705502	-	243	209695940	pdxJ	VSAL_I2522	-	pyridoxal phosphate biosynthetic protein PdxJ
2307	 41.70	0	2705499..2706215	-	238	209695941	recO	VSAL_I2523	-	DNA repair protein RecO (recombination protein O)
2308	 39.34	0	2706343..2707308	-	321	209695942	era	VSAL_I2524	-	GTP-binding protein era
2309	 41.52	0	2707308..2707979	-	223	209695943	rnc	VSAL_I2525	-	ribonuclease III (RNase III)
2310	 41.42	0	2707990..2708892	-	300	209695944	lepB	VSAL_I2526	-	signal peptidase I (leader peptidase I)
2311	 40.41	0	2709013..2710806	-	597	209695945	lepA	VSAL_I2527	-	GTP-binding protein LepA
2312	 37.65	0	2710896..2711381	-	161	209695946	-	VSAL_I2528	-	sigma-E factor regulatory protein RseC
2313	 39.88	0	2711386..2712363	-	325	209695947	-	VSAL_I2529	-	sigma-E factor regulatory protein RseB precursor
2314	 40.29	0	2712364..2712981	-	205	209695948	-	VSAL_I2530	-	sigma-E factor negative regulatory protein
2315	 41.28	0	2713011..2713589	-	192	209695949	rpoE	VSAL_I2531	-	RNA polymerase sigma-E factor
2316	 42.30	0	2713911..2715527	+	538	209695950	nadB	VSAL_I2532	-	L-aspartate oxidase (quinolinate synthetase B)
2317	 34.41	-1	2715627..2715998	-	123	209695951	-	VSAL_I2533	-	hypothetical protein
2318	 39.85	0	2715994..2716254	-	86	209695952	-	VSAL_I2534	-	hypothetical protein
2319	 39.29	0	2716433..2717389	+	318	209695953	-	VSAL_I2535	-	hypothetical protein
2320	 38.24	0	2717851..2718054	+	67	209695954	-	VSAL_I2536	-	hypothetical protein
2321	 40.05	0	2718141..2719346	-	401	209695955	-	VSAL_I2537	-	putative monooxygenase
2322	 40.25	0	2719349..2720548	-	399	209695956	ubiH	VSAL_I2538	-	2-octaprenyl-6-methoxyphenol hydroxylase
2323	 40.00	0	2720548..2721117	-	189	209695957	-	VSAL_I2539	-	hypothetical protein
2324	 38.60	0	2721355..2721696	+	113	209695958	-	VSAL_I2540	-	putative cell division protein ZapA
2325	 39.86	0	2721911..2722492	+	193	209695959	-	VSAL_I2541	-	putative 5-formyltetrahydrofolate cyclo-ligase
2326	 41.25	0	2722637..2723293	+	218	209695960	rpiA	VSAL_I2542	-	ribose-5-phosphate isomerase A (phosphoriboisomerase A)
2327	 35.94	-1	2723481..2724362	+	293	209695961	-	VSAL_I2543	-	transposase
2328	 40.89	0	2724503..2725732	+	409	209695962	serA	VSAL_I2544	-	D-3-phosphoglycerate dehydrogenase
2329	 37.07	0	2725835..2726530	-	231	209695963	-	VSAL_I2545	-	hypothetical protein
2330	 38.91	0	2726695..2727555	-	286	209695964	mscS	VSAL_I2546	-	small-conductance mechanosensitive channel
2331	 36.03	-1	2727812..2728591	-	259	209695965	-	VSAL_I2547	-	hypothetical protein
2332	 41.07	0	2728705..2730138	-	477	209695966	-	VSAL_I2548	-	putative amino-acid transporter
2333	 38.62	0	2730866..2731054	+	62	209695967	-	VSAL_I2549	-	hypothetical protein
2334	 34.84	-1	2731097..2731627	-	176	209695968	-	VSAL_I2550	-	putative hemerythrin
2335	 37.93	0	2731716..2732390	-	224	209695969	ung	VSAL_I2551	-	uracil-DNA glycosylase (UDG)
2336	 40.28	0	2732391..2733239	-	282	209695970	nfo	VSAL_I2552	-	endonuclease IV
2337	 40.74	0	2733601..2733978	+	125	209695971	grcA	VSAL_I2553	-	autonomous glycyl radical cofactor
2338	 39.02	0	2734134..2735417	-	427	209695972	thrC	VSAL_I2554	-	threonine synthase
2339	 40.54	0	2735414..2736370	-	318	209695973	thrB	VSAL_I2555	-	homoserine kinase
2340	 40.20	0	2736372..2738831	-	819	209695974	thrA	VSAL_I2556	-	bifunctional aspartokinase/homoserine dehydrogenase I
2341	 40.25	0	2739226..2739702	-	158	209695975	-	VSAL_I2557	-	demethylmenaquinone methyltransferase
2342	 40.69	0	2740146..2740865	+	239	209695976	arcA	VSAL_I2558	-	response regulator, aerobic respiration control protein ArcA
2343	 37.81	0	2740940..2741386	-	148	209695977	-	VSAL_I2559	-	putative lipoprotein
2344	 36.71	0	2741396..2743762	-	788	209695978	arcB	VSAL_I2560	-	response regulator, aerobic respiration control sensor protein ArcB
2345	 41.42	0	2745319..2749866	+	1515	209695979	gltB	VSAL_I2562	-	glutamate synthase, large subunit
2346	 41.28	0	2749866..2751338	+	490	209695980	-	VSAL_I2563	-	glutamate synthase, small subunit
2347	 31.94	-2	2751503..2751934	+	143	209695981	-	VSAL_I2564	-	putative lipoprotein
2348	 39.51	0	2757664..2758359	+	231	209695982	mtnN	VSAL_I2565	-	MTA/SAH nucleosidase (5'-methylthioadenosin nucleosidase) (S-adenosylhomocysteine nucleosidase)
2349	 36.90	0	2758425..2759378	+	317	209695983	-	VSAL_I2566	-	putative cobalamin biosynthesis protein
2350	 41.99	0	2759421..2760032	+	203	209695984	-	VSAL_I2567	-	inner membrane protein
2351	 38.60	0	2760222..2761532	+	436	209695985	-	VSAL_I2568	-	putative membrane associated peptidase
2352	 38.45	0	2761549..2764677	-	1042	209695986	-	VSAL_I2569	-	integral membrane protein, putative multidrug resistance protein
2353	 38.81	0	2764687..2765799	-	370	209695987	-	VSAL_I2570	-	membrane protein, putative periplasmic component of a bacterial drug efflux pump
2354	 36.55	0	2765930..2766271	-	113	209695988	-	VSAL_I2571	-	putative iron-sulphur cluster biosynthesis protein
2355	 42.98	+1	2766507..2767802	+	431	209695989	hemL	VSAL_I2572	-	glutamate-1-semialdehyde 2,1-aminomutase
2356	 37.66	0	2768062..2769147	+	361	209695990	-	VSAL_I2573	-	membrane protein
2357	 37.48	0	2769232..2770293	+	353	209695991	rsmC	VSAL_I2574	-	ribosomal RNA small subunit methyltransferase C (16S rRNA m2G120 methyltransferase)
2358	 37.23	0	2770458..2773841	+	1127	209695992	chiS	VSAL_I2575	-	chitin degradation sensor protein
2359	 40.43	0	2776248..2777234	+	328	209695993	-	VSAL_I2577	-	ABC-type [(GlcNAc)2] transporter, permease protein
2360	 42.79	+1	2777237..2778262	+	341	209695994	-	VSAL_I2578	-	ABC-type [(GlcNAc)2] transporter, permease protein
2361	 40.85	0	2778264..2779247	+	327	209695995	-	VSAL_I2579	-	ABC-type [(GlcNAc)2] transporter, ATP-binding protein
2362	 40.86	0	2779271..2780266	+	331	209695996	-	VSAL_I2580	-	ABC-type [(GlcNAc)2] transporter, ATP-binding protein
2363	 37.73	0	2780318..2782045	+	575	209695997	-	VSAL_I2581	-	putative chitobiase (exoglucosidase)
2364	 42.12	0	2782038..2782913	+	291	209695998	-	VSAL_I2582	-	glucosamine kinase
2365	 40.74	0	2782932..2784740	+	602	209695999	exoI	VSAL_I2583	-	beta-hexosaminidase (beta-N-acetylglucosaminidase)
2366	 42.25	0	2784878..2787166	+	762	209696000	chbP	VSAL_I2584	-	chitobiose phosphorylase (glycosyl transferase)
2367	 37.93	0	2787270..2788682	+	470	209696001	-	VSAL_I2585	-	phosphoglucomutase/phosphomannomutase
2368	 38.52	0	2788775..2789815	-	346	209696002	fbpC	VSAL_I2586	-	iron(III) ABC transporter, ATP-binding protein
2369	 38.73	0	2789815..2791446	-	543	209696003	fbpB	VSAL_I2587	-	iron(III) ABC transporter, permease protein
2370	 38.86	0	2791514..2792527	-	337	209696004	fbpA	VSAL_I2588	-	iron(III) ABC transporter, periplasmic iron-compound-binding protein
2371	 40.57	0	2792706..2793935	-	409	209696005	amtB	VSAL_I2589	-	ammonium transporter
2372	 39.53	0	2793956..2794294	-	112	209696006	glnB	VSAL_I2590	-	nitrogen regulatory protein P-II
2373	 35.50	-1	2794462..2794830	-	122	209696007	-	VSAL_I2591	-	hypothetical protein
2374	 34.21	-1	2794974..2796119	+	381	209696008	-	VSAL_I2592	-	carbohydrate diacid regulator (sugar diacid regulator)
2375	 44.23	+1	2796247..2797512	+	421	209696009	-	VSAL_I2593	-	gluconate permease
2376	 41.14	0	2797525..2798664	+	379	209696010	glxK	VSAL_I2594	-	glycerate kinase
2377	 42.02	0	2798754..2801342	-	862	209696011	acnB	VSAL_I2595	-	aconitate hydratase 2 (citrate hydro-lyase 2)
2378	 36.05	-1	2801617..2802498	-	293	209696012	-	VSAL_I2597	-	transposase
2379	 39.65	0	2804916..2806403	-	495	209696013	-	VSAL_I2598	-	transposase
2380	 36.21	-1	2806475..2806822	-	115	209696014	-	VSAL_I2599	-	transposase
2381	 37.78	0	2806819..2807133	-	104	209696015	-	VSAL_I2600	-	transposase
2382	 39.77	0	2815769..2818144	-	791	209696016	mrcB	VSAL_I2602	-	penicillin-binding protein transpeptidase
2383	 39.54	0	2818175..2820640	-	821	209696017	hrpB	VSAL_I2603	-	ATP-dependent helicase HrpB
2384	 37.71	0	2820700..2821407	+	235	209696018	sfsA	VSAL_I2604	-	sugar fermentation stimulation protein A
2385	 40.98	0	2821552..2822022	+	156	209696019	dksA	VSAL_I2605	-	DnaK suppressor protein
2386	 40.20	0	2823105..2824430	+	441	209696020	pcnB	VSAL_I2607	-	poly(A) polymerase (plasmid copy number protein)
2387	 42.18	0	2824427..2824912	+	161	209696021	folK	VSAL_I2608	-	2-amino-4-hydroxy-6-hydroxymethyl-dihydropterid ine diphosphokinase
2388	 41.26	0	2824935..2825729	+	264	209696022	panB	VSAL_I2609	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2389	 40.47	0	2825739..2826635	+	298	209696023	panC	VSAL_I2610	-	pantoate--beta-alanine ligase
2390	 39.78	0	2826738..2828225	-	495	209696024	-	VSAL_I2611	-	transposase
2391	 37.78	0	2828634..2828948	-	104	209696025	-	VSAL_I2613	-	transposase
2392	 36.32	-1	2829036..2829806	-	256	209696026	-	VSAL_I2614	-	ABC transporter, integral membrane protein
2393	 39.11	0	2829806..2830723	-	305	209696027	-	VSAL_I2615	-	ABC transporter, ATP-binding protein
2394	 37.27	0	2830820..2831479	+	219	209696028	can	VSAL_I2616	-	carbonic anhydrase 2
2395	 36.90	0	2831570..2831821	-	83	209696029	-	VSAL_I2617	-	hypothetical protein
2396	 36.35	0	2832308..2832838	-	176	209696030	hpt	VSAL_I2618	-	hypoxanthine phosphoribosyltransferase
2397	 36.96	0	2833164..2833769	+	201	209696031	litR	VSAL_I2619	-	HTH-type luminescence regulator LitR
2398	 37.78	0	2835691..2836005	-	104	209696032	-	VSAL_I2622	-	transposase
2399	 42.23	0	2836169..2837596	-	475	209696033	lpdA	VSAL_I2623	-	dihydrolipoamide dehydrogenase
2400	 43.13	+1	2839473..2842136	-	887	209696034	aceE	VSAL_I2625	-	pyruvate dehydrogenase E1 component
2401	 42.54	0	2842192..2842962	-	256	209696035	pdhR	VSAL_I2626	-	pyruvate dehydrogenase complex repressor
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.