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Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2216 43.23 +1 2596349..2597197 - 282 209695850 - VSAL_I2426 - elongation factor TS 2217 42.08 0 2597330..2598061 - 243 209695851 rpsB VSAL_I2427 - 30S ribosomal protein S2 2218 38.77 0 2598427..2599254 + 275 209695852 - VSAL_I2428 - methionine aminopeptidase 2219 40.01 0 2599448..2602099 + 883 209695853 glnD VSAL_I2429 - [protein-PII] uridylyltransferase 2220 35.94 -1 2602193..2603074 + 293 209695854 - VSAL_I2430 - transposase 2221 34.65 -1 2603230..2603610 + 126 209695855 - VSAL_I2431 - hypothetical protein 2222 41.75 0 2603684..2604634 - 316 209695856 secF VSAL_I2432 - protein-export membrane protein SecF 2223 42.54 0 2604648..2606504 - 618 209695857 secD VSAL_I2433 - protein-export membrane protein SecD 2224 39.64 0 2606558..2606890 - 110 209695858 - VSAL_I2434 - putative membrane subunit of preprotein translocase 2225 41.84 0 2606984..2608111 - 375 209695859 tgt VSAL_I2435 - queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) 2226 40.65 0 2608304..2609356 - 350 209695860 queA VSAL_I2436 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2227 36.94 0 2609599..2610042 + 147 209695861 - VSAL_I2437 - hypothetical protein 2228 43.34 +1 2610139..2611467 - 442 209695862 aceA VSAL_I2438 - isocitrate lyase 2229 41.00 0 2611482..2613086 - 534 209695863 aceB VSAL_I2439 - malate synthase A 2230 39.00 0 2613672..2614571 - 299 209695864 - VSAL_I2440 - transcriptional regulator, putative hydrogen peroxide-inducible regulon activator 2231 45.16 +1 2614720..2615328 + 202 209695865 - VSAL_I2441 - putative peroxidase/antioxidant 2232 40.73 0 2615595..2616338 + 247 209695866 - VSAL_I2442 - copper homeostasis protein CutC 2233 36.89 0 2616405..2616770 - 121 209695867 - VSAL_I2443 - hypothetical protein 2234 35.71 -1 2616815..2617444 - 209 209695868 - VSAL_I2444 - accessory colonization factor precursor AcfA 2235 36.57 0 2617733..2618659 + 308 209695869 - VSAL_I2445 - HTH-type transcriptional regulator, LysR family 2236 43.65 +1 2618823..2619452 + 209 209695870 - VSAL_I2446 - hypothetical protein 2237 35.70 -1 2620160..2620582 + 140 209695871 - VSAL_I2448 - transposase 2238 34.04 -1 2620600..2621166 + 188 209695872 - VSAL_I2449 - transposase 2239 39.24 0 2621279..2621854 - 191 209695873 - VSAL_I2450 - hypothetical protein 2240 39.77 0 2622007..2622705 - 232 209695874 phoU VSAL_I2451 - phosphate transport system regulatory protein PhoU 2241 36.75 0 2622741..2623559 - 272 209695875 pstB VSAL_I2452 - phosphate import protein, ATP-binding component PstB 2242 38.89 0 2623564..2625093 - 509 209695876 pstA VSAL_I2453 - phosphate import protein, transmembrane component PstA 2243 40.44 0 2625104..2627311 - 735 209695877 pstC VSAL_I2454 - phosphate import protein, transmembrane component PstC 2244 40.30 0 2627406..2628395 - 329 209695878 - VSAL_I2455 - hypothetical protein 2245 41.34 0 2628402..2629700 - 432 209695879 phoR VSAL_I2456 - histidine kinase PhoR (phosphate regulon sensor protein) 2246 41.85 0 2629731..2630423 - 230 209695880 phoB VSAL_I2457 - response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein) 2247 38.80 0 2630634..2631548 + 304 209695881 rdgC VSAL_I2458 - recombination associated protein RdgC 2248 37.78 0 2632016..2632330 + 104 209695882 - VSAL_I2460 - transposase 2249 35.92 -1 2632327..2632674 + 115 209695883 - VSAL_I2461 - transposase 2250 42.44 0 2635822..2637117 + 431 209695884 - VSAL_I2463 - MFS transporter 2251 41.00 0 2637189..2638205 + 338 209695885 - VSAL_I2464 - hypothetical protein 2252 37.59 0 2638373..2639383 + 336 209695886 - VSAL_I2465 - HTH-type transcriptional regulator, LacI-family 2253 43.27 +1 2639534..2640922 + 462 209695887 - VSAL_I2466 - peptidase 2254 40.78 0 2640926..2641180 + 84 209695888 fdx VSAL_I2467 - ferredoxin 2255 35.83 -1 2642123..2643004 + 293 209695889 - VSAL_I2469 - transposase 2256 43.74 +1 2643549..2644691 - 380 209695890 dnaJ VSAL_I2470 - chaperone protein DnaJ 2257 42.48 0 2645010..2646911 - 633 209695891 dnaK VSAL_I2471 - chaperone protein DnaK (heat shock protein 70) 2258 39.66 0 2647163..2648110 - 315 209695892 - VSAL_I2472 - hypothetical protein 2259 40.17 0 2648330..2648914 - 194 209695893 grpE VSAL_I2473 - protein GrpE (heat shock protein) 2260 39.60 0 2649080..2649973 + 297 209695894 - VSAL_I2474 - probable inorganic polyphosphate/ATP-NAD kinase 2261 38.99 0 2650071..2651768 + 565 209695895 recN VSAL_I2475 - DNA repair protein RecN 2262 39.78 0 2652019..2652375 + 118 209695896 - VSAL_I2476 - lipoprotein, small protein A 2263 37.41 0 2652463..2652756 - 97 209695897 - VSAL_I2477 - hypothetical protein 2264 37.67 0 2652761..2653198 - 145 209695898 - VSAL_I2478 - hypothetical protein 2265 40.74 0 2653300..2653785 + 161 209695899 smpB VSAL_I2479 - SsrA (tmRNA)-binding protein (small protein B) 2266 37.92 0 2654415..2655656 + 413 209695900 int VSAL_I2480 - integrase, phage family 2267 34.40 -1 2655827..2656576 - 249 209695901 - VSAL_I2481 - hypothetical protein, putative phage gene 2268 31.08 -2 2656578..2659508 - 976 209695902 - VSAL_I2482 - putative ABC transporter, ATP-binding domain 2269 37.78 0 2660814..2661128 + 104 209695903 - VSAL_I2484 - transposase 2270 36.21 -1 2661125..2661472 + 115 209695904 - VSAL_I2485 - transposase 2271 39.65 0 2661544..2663031 + 495 209695905 - VSAL_I2486 - transposase 2272 36.21 -1 2665710..2666057 - 115 209695906 - VSAL_I2488 - transposase 2273 38.14 0 2666054..2666365 - 103 209695907 - VSAL_I2489 - transposase 2274 41.03 0 2666559..2667428 - 289 209695908 pdxY VSAL_I2490 - pyridoxamine kinase 2275 39.74 0 2667505..2669643 - 712 209695909 cadA VSAL_I2491 - lysine decarboxylase 2276 43.60 +1 2669762..2671096 - 444 209695910 cadB VSAL_I2492 - probable cadaverine/lysine antiporter 2277 44.08 +1 2671757..2673226 + 489 209695911 - VSAL_I2493 - putative sodium/alanine symporter 2278 38.55 0 2673304..2674932 - 542 209695912 - VSAL_I2494 - putative transcriptional regulator 2279 41.25 0 2675480..2675896 + 138 209695913 - VSAL_I2495 - hypothetical protein 2280 38.36 0 2675962..2676399 - 145 209695914 - VSAL_I2496 - integral membrane protein 2281 42.62 +1 2676409..2676828 - 139 209695915 - VSAL_I2497 - integral membrane protein 2282 39.52 0 2677139..2678059 + 306 209695916 - VSAL_I2498 - integral membrane protein 2283 39.51 0 2678218..2679156 + 312 209695917 metA VSAL_I2499 - homoserine O-succinyltransferase 2284 42.93 +1 2679390..2680733 + 447 209695918 dcuB VSAL_I2500 - anaerobic C4-dicarboxylate transporter DcuB 2285 40.91 0 2680823..2682037 - 404 209695919 - VSAL_I2501 - nucleoside transport protein (nucleoside permease NupC) 2286 38.32 0 2682466..2683026 + 186 209695920 - VSAL_I2502 - membrane protein 2287 40.86 0 2683155..2684855 + 566 209695921 - VSAL_I2503 - putative transport system, permease protein 2288 39.23 0 2684869..2685462 + 197 209695922 - VSAL_I2504 - putative ABC transporter, ATP-binding protein 2289 35.89 -1 2685455..2686081 + 208 209695923 - VSAL_I2505 - putative phosphatidyltransferase 2290 39.75 0 2686176..2687141 - 321 209695924 rpoS VSAL_I2506 - RNA polymerase sigma subunit RpoS (sigma-38) 2291 41.39 0 2687197..2688189 - 330 209695925 - VSAL_I2507 - lipoprotein 2292 42.58 +1 2688196..2688822 - 208 209695926 pcm VSAL_I2508 - protein-L-isoaspartate O-methyltransferase 2293 40.52 0 2688822..2689586 - 254 209695927 surE VSAL_I2509 - multifunctional protein SurE (stationary-phase survival protein SurE) 2294 39.92 0 2689617..2690663 - 348 209695928 truD VSAL_I2510 - tRNA pseudouridine synthase D 2295 42.92 +1 2690678..2691157 - 159 209695929 ispF VSAL_I2511 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2296 41.53 0 2691154..2691873 - 239 209695930 ispD VSAL_I2512 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2297 38.60 0 2691877..2692161 - 94 209695931 ftsB VSAL_I2513 - cell division protein FtsB homolog 2298 44.42 +1 2692343..2693641 - 432 209695932 eno VSAL_I2514 - enolase 2299 42.54 0 2693718..2695358 - 546 209695933 pyrG VSAL_I2515 - CTP synthase 2300 36.48 0 2695489..2696313 - 274 209695934 - VSAL_I2516 - hypothetical protein 2301 39.64 0 2696413..2697570 - 385 209695935 flaF VSAL_I2517 - flagellin subunit F 2302 41.78 0 2697759..2699996 - 745 209695936 relA VSAL_I2518 - GTP pyrophosphokinase 2303 38.42 0 2700070..2701386 - 438 209695937 rumA VSAL_I2519 - 23S rRNA (uracil-5-)-methyltransferase RumA 2304 38.92 0 2701550..2704339 + 929 209695938 varS VSAL_I2520 - response regulator, histidine kinase VarS 2305 43.57 +1 2704391..2704771 - 126 209695939 acpS VSAL_I2521 - holo-[acyl-carrier protein] synthase 2306 42.49 0 2704771..2705502 - 243 209695940 pdxJ VSAL_I2522 - pyridoxal phosphate biosynthetic protein PdxJ 2307 41.70 0 2705499..2706215 - 238 209695941 recO VSAL_I2523 - DNA repair protein RecO (recombination protein O) 2308 39.34 0 2706343..2707308 - 321 209695942 era VSAL_I2524 - GTP-binding protein era 2309 41.52 0 2707308..2707979 - 223 209695943 rnc VSAL_I2525 - ribonuclease III (RNase III) 2310 41.42 0 2707990..2708892 - 300 209695944 lepB VSAL_I2526 - signal peptidase I (leader peptidase I) 2311 40.41 0 2709013..2710806 - 597 209695945 lepA VSAL_I2527 - GTP-binding protein LepA 2312 37.65 0 2710896..2711381 - 161 209695946 - VSAL_I2528 - sigma-E factor regulatory protein RseC 2313 39.88 0 2711386..2712363 - 325 209695947 - VSAL_I2529 - sigma-E factor regulatory protein RseB precursor 2314 40.29 0 2712364..2712981 - 205 209695948 - VSAL_I2530 - sigma-E factor negative regulatory protein 2315 41.28 0 2713011..2713589 - 192 209695949 rpoE VSAL_I2531 - RNA polymerase sigma-E factor 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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