IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2203	 40.87	0	2583148..2583771	-	207	209695837	rnhB	VSAL_I2413	-	ribonuclease HII
2204	 39.32	0	2583776..2584927	-	383	209695838	lpxB	VSAL_I2414	-	lipid-A-disaccharide synthase
2205	 39.67	0	2585004..2585792	-	262	209695839	lpxA	VSAL_I2415	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase
2206	 38.54	0	2585795..2586274	-	159	209695840	fabZ	VSAL_I2416	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
2207	 40.49	0	2586375..2587394	-	339	209695841	lpxD	VSAL_I2417	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2208	 37.79	0	2587403..2587918	-	171	209695842	-	VSAL_I2418	-	outer membrane protein
2209	 38.41	0	2587994..2590414	-	806	209695843	yaeT	VSAL_I2419	-	outer membrane protein assembly factor
2210	 38.78	0	2590443..2591801	-	452	209695844	ecfE	VSAL_I2420	-	protease EcfE
2211	 39.90	0	2591804..2593006	-	400	209695845	dxr	VSAL_I2421	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2212	 38.33	0	2593115..2593954	-	279	209695846	cdsA	VSAL_I2422	-	phosphatidate cytidylyltransferase
2213	 39.41	0	2593958..2594731	-	257	209695847	uppS	VSAL_I2423	-	undecaprenyl pyrophosphate synthetase
2214	 37.99	0	2594855..2595412	-	185	209695848	frr	VSAL_I2424	-	ribosome recycling factor
2215	 43.99	+1	2595447..2596178	-	243	209695849	pyrH	VSAL_I2425	-	uridylate kinase
2216	 43.23	+1	2596349..2597197	-	282	209695850	-	VSAL_I2426	-	elongation factor TS
2217	 42.08	0	2597330..2598061	-	243	209695851	rpsB	VSAL_I2427	-	30S ribosomal protein S2
2218	 38.77	0	2598427..2599254	+	275	209695852	-	VSAL_I2428	-	methionine aminopeptidase
2219	 40.01	0	2599448..2602099	+	883	209695853	glnD	VSAL_I2429	-	[protein-PII] uridylyltransferase
2220	 35.94	-1	2602193..2603074	+	293	209695854	-	VSAL_I2430	-	transposase
2221	 34.65	-1	2603230..2603610	+	126	209695855	-	VSAL_I2431	-	hypothetical protein
2222	 41.75	0	2603684..2604634	-	316	209695856	secF	VSAL_I2432	-	protein-export membrane protein SecF
2223	 42.54	0	2604648..2606504	-	618	209695857	secD	VSAL_I2433	-	protein-export membrane protein SecD
2224	 39.64	0	2606558..2606890	-	110	209695858	-	VSAL_I2434	-	putative membrane subunit of preprotein translocase
2225	 41.84	0	2606984..2608111	-	375	209695859	tgt	VSAL_I2435	-	queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)
2226	 40.65	0	2608304..2609356	-	350	209695860	queA	VSAL_I2436	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2227	 36.94	0	2609599..2610042	+	147	209695861	-	VSAL_I2437	-	hypothetical protein
2228	 43.34	+1	2610139..2611467	-	442	209695862	aceA	VSAL_I2438	-	isocitrate lyase
2229	 41.00	0	2611482..2613086	-	534	209695863	aceB	VSAL_I2439	-	malate synthase A
2230	 39.00	0	2613672..2614571	-	299	209695864	-	VSAL_I2440	-	transcriptional regulator, putative hydrogen peroxide-inducible regulon activator
2231	 45.16	+1	2614720..2615328	+	202	209695865	-	VSAL_I2441	-	putative peroxidase/antioxidant
2232	 40.73	0	2615595..2616338	+	247	209695866	-	VSAL_I2442	-	copper homeostasis protein CutC
2233	 36.89	0	2616405..2616770	-	121	209695867	-	VSAL_I2443	-	hypothetical protein
2234	 35.71	-1	2616815..2617444	-	209	209695868	-	VSAL_I2444	-	accessory colonization factor precursor AcfA
2235	 36.57	0	2617733..2618659	+	308	209695869	-	VSAL_I2445	-	HTH-type transcriptional regulator, LysR family
2236	 43.65	+1	2618823..2619452	+	209	209695870	-	VSAL_I2446	-	hypothetical protein
2237	 35.70	-1	2620160..2620582	+	140	209695871	-	VSAL_I2448	-	transposase
2238	 34.04	-1	2620600..2621166	+	188	209695872	-	VSAL_I2449	-	transposase
2239	 39.24	0	2621279..2621854	-	191	209695873	-	VSAL_I2450	-	hypothetical protein
2240	 39.77	0	2622007..2622705	-	232	209695874	phoU	VSAL_I2451	-	phosphate transport system regulatory protein PhoU
2241	 36.75	0	2622741..2623559	-	272	209695875	pstB	VSAL_I2452	-	phosphate import protein, ATP-binding component PstB
2242	 38.89	0	2623564..2625093	-	509	209695876	pstA	VSAL_I2453	-	phosphate import protein, transmembrane component PstA
2243	 40.44	0	2625104..2627311	-	735	209695877	pstC	VSAL_I2454	-	phosphate import protein, transmembrane component PstC
2244	 40.30	0	2627406..2628395	-	329	209695878	-	VSAL_I2455	-	hypothetical protein
2245	 41.34	0	2628402..2629700	-	432	209695879	phoR	VSAL_I2456	-	histidine kinase PhoR (phosphate regulon sensor protein)
2246	 41.85	0	2629731..2630423	-	230	209695880	phoB	VSAL_I2457	-	response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein)
2247	 38.80	0	2630634..2631548	+	304	209695881	rdgC	VSAL_I2458	-	recombination associated protein RdgC
2248	 37.78	0	2632016..2632330	+	104	209695882	-	VSAL_I2460	-	transposase
2249	 35.92	-1	2632327..2632674	+	115	209695883	-	VSAL_I2461	-	transposase
2250	 42.44	0	2635822..2637117	+	431	209695884	-	VSAL_I2463	-	MFS transporter
2251	 41.00	0	2637189..2638205	+	338	209695885	-	VSAL_I2464	-	hypothetical protein
2252	 37.59	0	2638373..2639383	+	336	209695886	-	VSAL_I2465	-	HTH-type transcriptional regulator, LacI-family
2253	 43.27	+1	2639534..2640922	+	462	209695887	-	VSAL_I2466	-	peptidase
2254	 40.78	0	2640926..2641180	+	84	209695888	fdx	VSAL_I2467	-	ferredoxin
2255	 35.83	-1	2642123..2643004	+	293	209695889	-	VSAL_I2469	-	transposase
2256	 43.74	+1	2643549..2644691	-	380	209695890	dnaJ	VSAL_I2470	-	chaperone protein DnaJ
2257	 42.48	0	2645010..2646911	-	633	209695891	dnaK	VSAL_I2471	-	chaperone protein DnaK (heat shock protein 70)
2258	 39.66	0	2647163..2648110	-	315	209695892	-	VSAL_I2472	-	hypothetical protein
2259	 40.17	0	2648330..2648914	-	194	209695893	grpE	VSAL_I2473	-	protein GrpE (heat shock protein)
2260	 39.60	0	2649080..2649973	+	297	209695894	-	VSAL_I2474	-	probable inorganic polyphosphate/ATP-NAD kinase
2261	 38.99	0	2650071..2651768	+	565	209695895	recN	VSAL_I2475	-	DNA repair protein RecN
2262	 39.78	0	2652019..2652375	+	118	209695896	-	VSAL_I2476	-	lipoprotein, small protein A
2263	 37.41	0	2652463..2652756	-	97	209695897	-	VSAL_I2477	-	hypothetical protein
2264	 37.67	0	2652761..2653198	-	145	209695898	-	VSAL_I2478	-	hypothetical protein
2265	 40.74	0	2653300..2653785	+	161	209695899	smpB	VSAL_I2479	-	SsrA (tmRNA)-binding protein (small protein B)
2266	 37.92	0	2654415..2655656	+	413	209695900	int	VSAL_I2480	-	integrase, phage family
2267	 34.40	-1	2655827..2656576	-	249	209695901	-	VSAL_I2481	-	hypothetical protein, putative phage gene
2268	 31.08	-2	2656578..2659508	-	976	209695902	-	VSAL_I2482	-	putative ABC transporter, ATP-binding domain
2269	 37.78	0	2660814..2661128	+	104	209695903	-	VSAL_I2484	-	transposase
2270	 36.21	-1	2661125..2661472	+	115	209695904	-	VSAL_I2485	-	transposase
2271	 39.65	0	2661544..2663031	+	495	209695905	-	VSAL_I2486	-	transposase
2272	 36.21	-1	2665710..2666057	-	115	209695906	-	VSAL_I2488	-	transposase
2273	 38.14	0	2666054..2666365	-	103	209695907	-	VSAL_I2489	-	transposase
2274	 41.03	0	2666559..2667428	-	289	209695908	pdxY	VSAL_I2490	-	pyridoxamine kinase
2275	 39.74	0	2667505..2669643	-	712	209695909	cadA	VSAL_I2491	-	lysine decarboxylase
2276	 43.60	+1	2669762..2671096	-	444	209695910	cadB	VSAL_I2492	-	probable cadaverine/lysine antiporter
2277	 44.08	+1	2671757..2673226	+	489	209695911	-	VSAL_I2493	-	putative sodium/alanine symporter
2278	 38.55	0	2673304..2674932	-	542	209695912	-	VSAL_I2494	-	putative transcriptional regulator
2279	 41.25	0	2675480..2675896	+	138	209695913	-	VSAL_I2495	-	hypothetical protein
2280	 38.36	0	2675962..2676399	-	145	209695914	-	VSAL_I2496	-	integral membrane protein
2281	 42.62	+1	2676409..2676828	-	139	209695915	-	VSAL_I2497	-	integral membrane protein
2282	 39.52	0	2677139..2678059	+	306	209695916	-	VSAL_I2498	-	integral membrane protein
2283	 39.51	0	2678218..2679156	+	312	209695917	metA	VSAL_I2499	-	homoserine O-succinyltransferase
2284	 42.93	+1	2679390..2680733	+	447	209695918	dcuB	VSAL_I2500	-	anaerobic C4-dicarboxylate transporter DcuB
2285	 40.91	0	2680823..2682037	-	404	209695919	-	VSAL_I2501	-	nucleoside transport protein (nucleoside permease NupC)
2286	 38.32	0	2682466..2683026	+	186	209695920	-	VSAL_I2502	-	membrane protein
2287	 40.86	0	2683155..2684855	+	566	209695921	-	VSAL_I2503	-	putative transport system, permease protein
2288	 39.23	0	2684869..2685462	+	197	209695922	-	VSAL_I2504	-	putative ABC transporter, ATP-binding protein
2289	 35.89	-1	2685455..2686081	+	208	209695923	-	VSAL_I2505	-	putative phosphatidyltransferase
2290	 39.75	0	2686176..2687141	-	321	209695924	rpoS	VSAL_I2506	-	RNA polymerase sigma subunit RpoS (sigma-38)
2291	 41.39	0	2687197..2688189	-	330	209695925	-	VSAL_I2507	-	lipoprotein
2292	 42.58	+1	2688196..2688822	-	208	209695926	pcm	VSAL_I2508	-	protein-L-isoaspartate O-methyltransferase
2293	 40.52	0	2688822..2689586	-	254	209695927	surE	VSAL_I2509	-	multifunctional protein SurE (stationary-phase survival protein SurE)
2294	 39.92	0	2689617..2690663	-	348	209695928	truD	VSAL_I2510	-	tRNA pseudouridine synthase D
2295	 42.92	+1	2690678..2691157	-	159	209695929	ispF	VSAL_I2511	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2296	 41.53	0	2691154..2691873	-	239	209695930	ispD	VSAL_I2512	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2297	 38.60	0	2691877..2692161	-	94	209695931	ftsB	VSAL_I2513	-	cell division protein FtsB homolog
2298	 44.42	+1	2692343..2693641	-	432	209695932	eno	VSAL_I2514	-	enolase
2299	 42.54	0	2693718..2695358	-	546	209695933	pyrG	VSAL_I2515	-	CTP synthase
2300	 36.48	0	2695489..2696313	-	274	209695934	-	VSAL_I2516	-	hypothetical protein
2301	 39.64	0	2696413..2697570	-	385	209695935	flaF	VSAL_I2517	-	flagellin subunit F
2302	 41.78	0	2697759..2699996	-	745	209695936	relA	VSAL_I2518	-	GTP pyrophosphokinase
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.