version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2192 39.79 0 2570113..2570871 + 252 209695826 - VSAL_I2401 - putative metallo-beta-lactamase 2193 40.15 0 2570958..2572511 + 517 209695827 mltD VSAL_I2402 - membrane-bound lytic murein transglycosylase D precursor 2194 39.65 0 2572870..2574357 - 495 209695828 - VSAL_I2404 - transposase 2195 36.21 -1 2574429..2574776 - 115 209695829 - VSAL_I2405 - transposase 2196 37.78 0 2574773..2575087 - 104 209695830 - VSAL_I2406 - transposase 2197 37.31 0 2575504..2576358 - 284 209695831 - VSAL_I2407 - putative nuclease 2198 40.12 0 2576424..2576762 - 112 209695832 glnB VSAL_I2408 - nitrogen regulatory protein P-II 2199 42.63 +1 2576855..2577166 - 103 209695833 - VSAL_I2409 - cytochrome c-552 2200 40.09 0 2577219..2578550 - 443 209695834 tilS VSAL_I2410 - tRNA(Ile)-lysidine synthase 2201 39.48 0 2578658..2579617 - 319 209695835 accA VSAL_I2411 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 2202 41.67 0 2579669..2583148 - 1159 209695836 dnaE VSAL_I2412 - DNA polymerase III, alpha chain 2203 40.87 0 2583148..2583771 - 207 209695837 rnhB VSAL_I2413 - ribonuclease HII 2204 39.32 0 2583776..2584927 - 383 209695838 lpxB VSAL_I2414 - lipid-A-disaccharide synthase 2205 39.67 0 2585004..2585792 - 262 209695839 lpxA VSAL_I2415 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase 2206 38.54 0 2585795..2586274 - 159 209695840 fabZ VSAL_I2416 - (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase 2207 40.49 0 2586375..2587394 - 339 209695841 lpxD VSAL_I2417 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2208 37.79 0 2587403..2587918 - 171 209695842 - VSAL_I2418 - outer membrane protein 2209 38.41 0 2587994..2590414 - 806 209695843 yaeT VSAL_I2419 - outer membrane protein assembly factor 2210 38.78 0 2590443..2591801 - 452 209695844 ecfE VSAL_I2420 - protease EcfE 2211 39.90 0 2591804..2593006 - 400 209695845 dxr VSAL_I2421 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2212 38.33 0 2593115..2593954 - 279 209695846 cdsA VSAL_I2422 - phosphatidate cytidylyltransferase 2213 39.41 0 2593958..2594731 - 257 209695847 uppS VSAL_I2423 - undecaprenyl pyrophosphate synthetase 2214 37.99 0 2594855..2595412 - 185 209695848 frr VSAL_I2424 - ribosome recycling factor 2215 43.99 +1 2595447..2596178 - 243 209695849 pyrH VSAL_I2425 - uridylate kinase 2216 43.23 +1 2596349..2597197 - 282 209695850 - VSAL_I2426 - elongation factor TS 2217 42.08 0 2597330..2598061 - 243 209695851 rpsB VSAL_I2427 - 30S ribosomal protein S2 2218 38.77 0 2598427..2599254 + 275 209695852 - VSAL_I2428 - methionine aminopeptidase 2219 40.01 0 2599448..2602099 + 883 209695853 glnD VSAL_I2429 - [protein-PII] uridylyltransferase 2220 35.94 -1 2602193..2603074 + 293 209695854 - VSAL_I2430 - transposase 2221 34.65 -1 2603230..2603610 + 126 209695855 - VSAL_I2431 - hypothetical protein 2222 41.75 0 2603684..2604634 - 316 209695856 secF VSAL_I2432 - protein-export membrane protein SecF 2223 42.54 0 2604648..2606504 - 618 209695857 secD VSAL_I2433 - protein-export membrane protein SecD 2224 39.64 0 2606558..2606890 - 110 209695858 - VSAL_I2434 - putative membrane subunit of preprotein translocase 2225 41.84 0 2606984..2608111 - 375 209695859 tgt VSAL_I2435 - queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) 2226 40.65 0 2608304..2609356 - 350 209695860 queA VSAL_I2436 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2227 36.94 0 2609599..2610042 + 147 209695861 - VSAL_I2437 - hypothetical protein 2228 43.34 +1 2610139..2611467 - 442 209695862 aceA VSAL_I2438 - isocitrate lyase 2229 41.00 0 2611482..2613086 - 534 209695863 aceB VSAL_I2439 - malate synthase A 2230 39.00 0 2613672..2614571 - 299 209695864 - VSAL_I2440 - transcriptional regulator, putative hydrogen peroxide-inducible regulon activator 2231 45.16 +1 2614720..2615328 + 202 209695865 - VSAL_I2441 - putative peroxidase/antioxidant 2232 40.73 0 2615595..2616338 + 247 209695866 - VSAL_I2442 - copper homeostasis protein CutC 2233 36.89 0 2616405..2616770 - 121 209695867 - VSAL_I2443 - hypothetical protein 2234 35.71 -1 2616815..2617444 - 209 209695868 - VSAL_I2444 - accessory colonization factor precursor AcfA 2235 36.57 0 2617733..2618659 + 308 209695869 - VSAL_I2445 - HTH-type transcriptional regulator, LysR family 2236 43.65 +1 2618823..2619452 + 209 209695870 - VSAL_I2446 - hypothetical protein 2237 35.70 -1 2620160..2620582 + 140 209695871 - VSAL_I2448 - transposase 2238 34.04 -1 2620600..2621166 + 188 209695872 - VSAL_I2449 - transposase 2239 39.24 0 2621279..2621854 - 191 209695873 - VSAL_I2450 - hypothetical protein 2240 39.77 0 2622007..2622705 - 232 209695874 phoU VSAL_I2451 - phosphate transport system regulatory protein PhoU 2241 36.75 0 2622741..2623559 - 272 209695875 pstB VSAL_I2452 - phosphate import protein, ATP-binding component PstB 2242 38.89 0 2623564..2625093 - 509 209695876 pstA VSAL_I2453 - phosphate import protein, transmembrane component PstA 2243 40.44 0 2625104..2627311 - 735 209695877 pstC VSAL_I2454 - phosphate import protein, transmembrane component PstC 2244 40.30 0 2627406..2628395 - 329 209695878 - VSAL_I2455 - hypothetical protein 2245 41.34 0 2628402..2629700 - 432 209695879 phoR VSAL_I2456 - histidine kinase PhoR (phosphate regulon sensor protein) 2246 41.85 0 2629731..2630423 - 230 209695880 phoB VSAL_I2457 - response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein) 2247 38.80 0 2630634..2631548 + 304 209695881 rdgC VSAL_I2458 - recombination associated protein RdgC 2248 37.78 0 2632016..2632330 + 104 209695882 - VSAL_I2460 - transposase 2249 35.92 -1 2632327..2632674 + 115 209695883 - VSAL_I2461 - transposase 2250 42.44 0 2635822..2637117 + 431 209695884 - VSAL_I2463 - MFS transporter 2251 41.00 0 2637189..2638205 + 338 209695885 - VSAL_I2464 - hypothetical protein 2252 37.59 0 2638373..2639383 + 336 209695886 - VSAL_I2465 - HTH-type transcriptional regulator, LacI-family 2253 43.27 +1 2639534..2640922 + 462 209695887 - VSAL_I2466 - peptidase 2254 40.78 0 2640926..2641180 + 84 209695888 fdx VSAL_I2467 - ferredoxin 2255 35.83 -1 2642123..2643004 + 293 209695889 - VSAL_I2469 - transposase 2256 43.74 +1 2643549..2644691 - 380 209695890 dnaJ VSAL_I2470 - chaperone protein DnaJ 2257 42.48 0 2645010..2646911 - 633 209695891 dnaK VSAL_I2471 - chaperone protein DnaK (heat shock protein 70) 2258 39.66 0 2647163..2648110 - 315 209695892 - VSAL_I2472 - hypothetical protein 2259 40.17 0 2648330..2648914 - 194 209695893 grpE VSAL_I2473 - protein GrpE (heat shock protein) 2260 39.60 0 2649080..2649973 + 297 209695894 - VSAL_I2474 - probable inorganic polyphosphate/ATP-NAD kinase 2261 38.99 0 2650071..2651768 + 565 209695895 recN VSAL_I2475 - DNA repair protein RecN 2262 39.78 0 2652019..2652375 + 118 209695896 - VSAL_I2476 - lipoprotein, small protein A 2263 37.41 0 2652463..2652756 - 97 209695897 - VSAL_I2477 - hypothetical protein 2264 37.67 0 2652761..2653198 - 145 209695898 - VSAL_I2478 - hypothetical protein 2265 40.74 0 2653300..2653785 + 161 209695899 smpB VSAL_I2479 - SsrA (tmRNA)-binding protein (small protein B) 2266 37.92 0 2654415..2655656 + 413 209695900 int VSAL_I2480 - integrase, phage family 2267 34.40 -1 2655827..2656576 - 249 209695901 - VSAL_I2481 - hypothetical protein, putative phage gene 2268 31.08 -2 2656578..2659508 - 976 209695902 - VSAL_I2482 - putative ABC transporter, ATP-binding domain 2269 37.78 0 2660814..2661128 + 104 209695903 - VSAL_I2484 - transposase 2270 36.21 -1 2661125..2661472 + 115 209695904 - VSAL_I2485 - transposase 2271 39.65 0 2661544..2663031 + 495 209695905 - VSAL_I2486 - transposase 2272 36.21 -1 2665710..2666057 - 115 209695906 - VSAL_I2488 - transposase 2273 38.14 0 2666054..2666365 - 103 209695907 - VSAL_I2489 - transposase 2274 41.03 0 2666559..2667428 - 289 209695908 pdxY VSAL_I2490 - pyridoxamine kinase 2275 39.74 0 2667505..2669643 - 712 209695909 cadA VSAL_I2491 - lysine decarboxylase 2276 43.60 +1 2669762..2671096 - 444 209695910 cadB VSAL_I2492 - probable cadaverine/lysine antiporter 2277 44.08 +1 2671757..2673226 + 489 209695911 - VSAL_I2493 - putative sodium/alanine symporter 2278 38.55 0 2673304..2674932 - 542 209695912 - VSAL_I2494 - putative transcriptional regulator 2279 41.25 0 2675480..2675896 + 138 209695913 - VSAL_I2495 - hypothetical protein 2280 38.36 0 2675962..2676399 - 145 209695914 - VSAL_I2496 - integral membrane protein 2281 42.62 +1 2676409..2676828 - 139 209695915 - VSAL_I2497 - integral membrane protein 2282 39.52 0 2677139..2678059 + 306 209695916 - VSAL_I2498 - integral membrane protein 2283 39.51 0 2678218..2679156 + 312 209695917 metA VSAL_I2499 - homoserine O-succinyltransferase 2284 42.93 +1 2679390..2680733 + 447 209695918 dcuB VSAL_I2500 - anaerobic C4-dicarboxylate transporter DcuB 2285 40.91 0 2680823..2682037 - 404 209695919 - VSAL_I2501 - nucleoside transport protein (nucleoside permease NupC) 2286 38.32 0 2682466..2683026 + 186 209695920 - VSAL_I2502 - membrane protein 2287 40.86 0 2683155..2684855 + 566 209695921 - VSAL_I2503 - putative transport system, permease protein 2288 39.23 0 2684869..2685462 + 197 209695922 - VSAL_I2504 - putative ABC transporter, ATP-binding protein 2289 35.89 -1 2685455..2686081 + 208 209695923 - VSAL_I2505 - putative phosphatidyltransferase 2290 39.75 0 2686176..2687141 - 321 209695924 rpoS VSAL_I2506 - RNA polymerase sigma subunit RpoS (sigma-38) 2291 41.39 0 2687197..2688189 - 330 209695925 - VSAL_I2507 - lipoprotein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.