version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2163 40.43 0 2545014..2545295 - 93 209695797 - VSAL_I2372 - hypothetical protein 2164 50.18 +2 2545461..2545745 - 94 209695798 - VSAL_I2373 - hypothetical protein 2165 34.65 -1 2545924..2546226 + 100 209695799 - VSAL_I2374 - putative arsenate reductase 2166 43.21 +1 2546317..2547450 + 377 209695800 dapE VSAL_I2375 - succinyl-diaminopimelate desuccinylase 2167 39.16 0 2547510..2548178 + 222 209695801 - VSAL_I2376 - D-alanyl-D-alanine carboxypeptidase 2168 38.01 0 2548181..2548351 + 56 209695802 - VSAL_I2377 - hypothetical protein 2169 39.98 0 2548424..2549476 - 350 209695803 - VSAL_I2378 - NlpB/DapX lipoprotein 2170 40.70 0 2549488..2550369 - 293 209695804 dapA VSAL_I2379 - dihydrodipicolinate synthase 2171 36.93 0 2550645..2551172 + 175 209695805 gcvR VSAL_I2380 - glycine cleavage system transcriptional repressor (Gcv operon repressor) 2172 39.28 0 2551200..2551670 + 156 209695806 bcp VSAL_I2381 - putative peroxiredoxin bcp (thioredoxin reductase (bacterioferritin comigratory protein) 2173 39.42 0 2551746..2552813 - 355 209695807 - VSAL_I2382 - membrane protein 2174 37.72 0 2552815..2553042 - 75 209695808 - VSAL_I2383 - hypothetical protein 2175 42.89 +1 2553230..2554684 + 484 209695809 - VSAL_I2384 - peptidase 2176 35.61 -1 2554711..2555061 + 116 209695810 - VSAL_I2385 - putative arsenate reductase 2177 37.41 0 2555082..2555522 + 146 209695811 - VSAL_I2386 - hypothetical protein 2178 39.01 0 2555609..2556805 - 398 209695812 - VSAL_I2387 - hypothetical protein 2179 42.45 0 2557012..2558262 + 416 209695813 pyrP VSAL_I2388 - uracil permease 2180 40.67 0 2558416..2559042 - 208 209695814 upp VSAL_I2389 - uracil phosphoribosyltransferase 2181 42.17 0 2559268..2560308 + 346 209695815 purM VSAL_I2390 - phosphoribosylformylglycinamidine cyclo-ligase (phosphoribosyl-aminoimidazole synthetase) 2182 40.16 0 2560436..2561080 + 214 209695816 purN VSAL_I2391 - phosphoribosylglycinamide formyltransferase 2183 40.82 0 2561138..2561965 - 275 209695817 - VSAL_I2392 - putative amidotransferase 2184 40.38 0 2562000..2562581 - 193 209695818 gmhA VSAL_I2393 - phosphoheptose isomerase 2185 35.94 -1 2562847..2563728 + 293 209695819 - VSAL_I2394 - transposase 2186 42.20 0 2563944..2566391 + 815 209695820 fadE VSAL_I2395 - acyl-coenzyme A dehydrogenase 2187 31.07 -2 2566470..2566646 - 58 209695821 - VSAL_I2396 - hypothetical protein 2188 37.93 0 2566806..2568068 - 420 209695822 - VSAL_I2397 - hypothetical protein 2189 39.62 0 2568079..2568810 - 243 209695823 dnaQ VSAL_I2398 - DNA polymerase III, epsilon chain 2190 44.30 +1 2568848..2569321 + 157 209695824 rnhA VSAL_I2399 - Ribonuclease H 2191 39.65 0 2569318..2570061 - 247 209695825 - VSAL_I2400 - hypothetical protein 2192 39.79 0 2570113..2570871 + 252 209695826 - VSAL_I2401 - putative metallo-beta-lactamase 2193 40.15 0 2570958..2572511 + 517 209695827 mltD VSAL_I2402 - membrane-bound lytic murein transglycosylase D precursor 2194 39.65 0 2572870..2574357 - 495 209695828 - VSAL_I2404 - transposase 2195 36.21 -1 2574429..2574776 - 115 209695829 - VSAL_I2405 - transposase 2196 37.78 0 2574773..2575087 - 104 209695830 - VSAL_I2406 - transposase 2197 37.31 0 2575504..2576358 - 284 209695831 - VSAL_I2407 - putative nuclease 2198 40.12 0 2576424..2576762 - 112 209695832 glnB VSAL_I2408 - nitrogen regulatory protein P-II 2199 42.63 +1 2576855..2577166 - 103 209695833 - VSAL_I2409 - cytochrome c-552 2200 40.09 0 2577219..2578550 - 443 209695834 tilS VSAL_I2410 - tRNA(Ile)-lysidine synthase 2201 39.48 0 2578658..2579617 - 319 209695835 accA VSAL_I2411 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 2202 41.67 0 2579669..2583148 - 1159 209695836 dnaE VSAL_I2412 - DNA polymerase III, alpha chain 2203 40.87 0 2583148..2583771 - 207 209695837 rnhB VSAL_I2413 - ribonuclease HII 2204 39.32 0 2583776..2584927 - 383 209695838 lpxB VSAL_I2414 - lipid-A-disaccharide synthase 2205 39.67 0 2585004..2585792 - 262 209695839 lpxA VSAL_I2415 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase 2206 38.54 0 2585795..2586274 - 159 209695840 fabZ VSAL_I2416 - (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase 2207 40.49 0 2586375..2587394 - 339 209695841 lpxD VSAL_I2417 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2208 37.79 0 2587403..2587918 - 171 209695842 - VSAL_I2418 - outer membrane protein 2209 38.41 0 2587994..2590414 - 806 209695843 yaeT VSAL_I2419 - outer membrane protein assembly factor 2210 38.78 0 2590443..2591801 - 452 209695844 ecfE VSAL_I2420 - protease EcfE 2211 39.90 0 2591804..2593006 - 400 209695845 dxr VSAL_I2421 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2212 38.33 0 2593115..2593954 - 279 209695846 cdsA VSAL_I2422 - phosphatidate cytidylyltransferase 2213 39.41 0 2593958..2594731 - 257 209695847 uppS VSAL_I2423 - undecaprenyl pyrophosphate synthetase 2214 37.99 0 2594855..2595412 - 185 209695848 frr VSAL_I2424 - ribosome recycling factor 2215 43.99 +1 2595447..2596178 - 243 209695849 pyrH VSAL_I2425 - uridylate kinase 2216 43.23 +1 2596349..2597197 - 282 209695850 - VSAL_I2426 - elongation factor TS 2217 42.08 0 2597330..2598061 - 243 209695851 rpsB VSAL_I2427 - 30S ribosomal protein S2 2218 38.77 0 2598427..2599254 + 275 209695852 - VSAL_I2428 - methionine aminopeptidase 2219 40.01 0 2599448..2602099 + 883 209695853 glnD VSAL_I2429 - [protein-PII] uridylyltransferase 2220 35.94 -1 2602193..2603074 + 293 209695854 - VSAL_I2430 - transposase 2221 34.65 -1 2603230..2603610 + 126 209695855 - VSAL_I2431 - hypothetical protein 2222 41.75 0 2603684..2604634 - 316 209695856 secF VSAL_I2432 - protein-export membrane protein SecF 2223 42.54 0 2604648..2606504 - 618 209695857 secD VSAL_I2433 - protein-export membrane protein SecD 2224 39.64 0 2606558..2606890 - 110 209695858 - VSAL_I2434 - putative membrane subunit of preprotein translocase 2225 41.84 0 2606984..2608111 - 375 209695859 tgt VSAL_I2435 - queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) 2226 40.65 0 2608304..2609356 - 350 209695860 queA VSAL_I2436 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2227 36.94 0 2609599..2610042 + 147 209695861 - VSAL_I2437 - hypothetical protein 2228 43.34 +1 2610139..2611467 - 442 209695862 aceA VSAL_I2438 - isocitrate lyase 2229 41.00 0 2611482..2613086 - 534 209695863 aceB VSAL_I2439 - malate synthase A 2230 39.00 0 2613672..2614571 - 299 209695864 - VSAL_I2440 - transcriptional regulator, putative hydrogen peroxide-inducible regulon activator 2231 45.16 +1 2614720..2615328 + 202 209695865 - VSAL_I2441 - putative peroxidase/antioxidant 2232 40.73 0 2615595..2616338 + 247 209695866 - VSAL_I2442 - copper homeostasis protein CutC 2233 36.89 0 2616405..2616770 - 121 209695867 - VSAL_I2443 - hypothetical protein 2234 35.71 -1 2616815..2617444 - 209 209695868 - VSAL_I2444 - accessory colonization factor precursor AcfA 2235 36.57 0 2617733..2618659 + 308 209695869 - VSAL_I2445 - HTH-type transcriptional regulator, LysR family 2236 43.65 +1 2618823..2619452 + 209 209695870 - VSAL_I2446 - hypothetical protein 2237 35.70 -1 2620160..2620582 + 140 209695871 - VSAL_I2448 - transposase 2238 34.04 -1 2620600..2621166 + 188 209695872 - VSAL_I2449 - transposase 2239 39.24 0 2621279..2621854 - 191 209695873 - VSAL_I2450 - hypothetical protein 2240 39.77 0 2622007..2622705 - 232 209695874 phoU VSAL_I2451 - phosphate transport system regulatory protein PhoU 2241 36.75 0 2622741..2623559 - 272 209695875 pstB VSAL_I2452 - phosphate import protein, ATP-binding component PstB 2242 38.89 0 2623564..2625093 - 509 209695876 pstA VSAL_I2453 - phosphate import protein, transmembrane component PstA 2243 40.44 0 2625104..2627311 - 735 209695877 pstC VSAL_I2454 - phosphate import protein, transmembrane component PstC 2244 40.30 0 2627406..2628395 - 329 209695878 - VSAL_I2455 - hypothetical protein 2245 41.34 0 2628402..2629700 - 432 209695879 phoR VSAL_I2456 - histidine kinase PhoR (phosphate regulon sensor protein) 2246 41.85 0 2629731..2630423 - 230 209695880 phoB VSAL_I2457 - response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein) 2247 38.80 0 2630634..2631548 + 304 209695881 rdgC VSAL_I2458 - recombination associated protein RdgC 2248 37.78 0 2632016..2632330 + 104 209695882 - VSAL_I2460 - transposase 2249 35.92 -1 2632327..2632674 + 115 209695883 - VSAL_I2461 - transposase 2250 42.44 0 2635822..2637117 + 431 209695884 - VSAL_I2463 - MFS transporter 2251 41.00 0 2637189..2638205 + 338 209695885 - VSAL_I2464 - hypothetical protein 2252 37.59 0 2638373..2639383 + 336 209695886 - VSAL_I2465 - HTH-type transcriptional regulator, LacI-family 2253 43.27 +1 2639534..2640922 + 462 209695887 - VSAL_I2466 - peptidase 2254 40.78 0 2640926..2641180 + 84 209695888 fdx VSAL_I2467 - ferredoxin 2255 35.83 -1 2642123..2643004 + 293 209695889 - VSAL_I2469 - transposase 2256 43.74 +1 2643549..2644691 - 380 209695890 dnaJ VSAL_I2470 - chaperone protein DnaJ 2257 42.48 0 2645010..2646911 - 633 209695891 dnaK VSAL_I2471 - chaperone protein DnaK (heat shock protein 70) 2258 39.66 0 2647163..2648110 - 315 209695892 - VSAL_I2472 - hypothetical protein 2259 40.17 0 2648330..2648914 - 194 209695893 grpE VSAL_I2473 - protein GrpE (heat shock protein) 2260 39.60 0 2649080..2649973 + 297 209695894 - VSAL_I2474 - probable inorganic polyphosphate/ATP-NAD kinase 2261 38.99 0 2650071..2651768 + 565 209695895 recN VSAL_I2475 - DNA repair protein RecN 2262 39.78 0 2652019..2652375 + 118 209695896 - VSAL_I2476 - lipoprotein, small protein A 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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