IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2136	 36.60	0	2516889..2517317	+	142	209695770	flgN	VSAL_I2343	-	polar flagellar FlgN, putative chaperone
2137	 40.46	0	2517869..2518303	-	144	209695771	-	VSAL_I2344	-	putative lipoprotein
2138	 37.42	0	2518312..2518947	-	211	209695772	-	VSAL_I2345	-	hypothetical protein
2139	 37.55	0	2519120..2520256	+	378	209695773	-	VSAL_I2346	-	hypothetical protein
2140	 33.59	-1	2520393..2521541	+	382	209695774	-	VSAL_I2347	-	hypothetical protein
2141	 31.80	-2	2521547..2522329	+	260	209695775	-	VSAL_I2348	-	putative membrane associated GGDEF protein
2142	 37.29	0	2522480..2522656	+	58	209695776	-	VSAL_I2349	-	hypothetical protein
2143	 40.42	0	2522708..2524132	-	474	209695777	gltX	VSAL_I2350	-	glutamyl-tRNA synthetase
2144	 34.72	-1	2524318..2525109	-	263	209695778	-	VSAL_I2351	-	putative lipoprotein
2145	 41.54	0	2526803..2528812	-	669	209695779	-	VSAL_I2353	-	NAD-dependent DNA ligase
2146	 39.37	0	2528903..2529829	-	308	209695780	-	VSAL_I2354	-	cell division protein ZipA
2147	 37.98	0	2530101..2530853	+	250	209695781	cysZ	VSAL_I2355	-	sulfate transport protein CysZ
2148	 42.52	0	2531018..2531986	+	322	209695782	cysK	VSAL_I2356	-	cysteine synthase A
2149	 41.86	0	2532306..2532563	+	85	209695783	ptsH	VSAL_I2357	-	phosphocarrier protein Hpr, histidine-containing protein (PTS system)
2150	 40.46	0	2532621..2534345	+	574	209695784	ptsI	VSAL_I2358	-	phosphoenolpyruvate-protein phosphotransferase enzyme I (PTS system)
2151	 40.59	0	2534422..2534931	+	169	209695785	crr	VSAL_I2359	-	glucose-specific phosphotransferase enzyme IIA component (PTS system)
2152	 39.74	0	2535025..2535930	-	301	209695786	-	VSAL_I2360	-	putative Dyp-type peroxidase
2153	 39.23	0	2536014..2536403	-	129	209695787	-	VSAL_I2361	-	hypothetical protein
2154	 37.28	0	2536415..2536870	-	151	209695788	-	VSAL_I2362	-	inner membrane protein
2155	 32.49	-2	2537072..2537428	+	118	209695789	-	VSAL_I2363	-	membrane protein
2156	 40.28	0	2537639..2538214	-	191	209695790	napC	VSAL_I2364	-	cytochrome c-type protein NapC
2157	 41.35	0	2538247..2538720	-	157	209695791	napB	VSAL_I2365	-	cytochrome C-type protein NapB precursor
2158	 35.44	-1	2541276..2541560	-	94	209695792	-	VSAL_I2367	-	NapD protein
2159	 40.85	0	2541560..2542078	-	172	209695793	-	VSAL_I2368	-	ferredoxin-type protein NapF
2160	 37.06	0	2542267..2543958	+	563	209695794	narQ	VSAL_I2369	-	nitrate/nitrite sensor protein NarQ
2161	 38.40	0	2543982..2544593	+	203	209695795	narP	VSAL_I2370	-	nitrate/nitrite response regulator protein NarP
2162	 36.31	-1	2544595..2544930	+	111	209695796	-	VSAL_I2371	-	putative lipoprotein
2163	 40.43	0	2545014..2545295	-	93	209695797	-	VSAL_I2372	-	hypothetical protein
2164	 50.18	+2	2545461..2545745	-	94	209695798	-	VSAL_I2373	-	hypothetical protein
2165	 34.65	-1	2545924..2546226	+	100	209695799	-	VSAL_I2374	-	putative arsenate reductase
2166	 43.21	+1	2546317..2547450	+	377	209695800	dapE	VSAL_I2375	-	succinyl-diaminopimelate desuccinylase
2167	 39.16	0	2547510..2548178	+	222	209695801	-	VSAL_I2376	-	D-alanyl-D-alanine carboxypeptidase
2168	 38.01	0	2548181..2548351	+	56	209695802	-	VSAL_I2377	-	hypothetical protein
2169	 39.98	0	2548424..2549476	-	350	209695803	-	VSAL_I2378	-	NlpB/DapX lipoprotein
2170	 40.70	0	2549488..2550369	-	293	209695804	dapA	VSAL_I2379	-	dihydrodipicolinate synthase
2171	 36.93	0	2550645..2551172	+	175	209695805	gcvR	VSAL_I2380	-	glycine cleavage system transcriptional repressor (Gcv operon repressor)
2172	 39.28	0	2551200..2551670	+	156	209695806	bcp	VSAL_I2381	-	putative peroxiredoxin bcp (thioredoxin reductase (bacterioferritin comigratory protein)
2173	 39.42	0	2551746..2552813	-	355	209695807	-	VSAL_I2382	-	membrane protein
2174	 37.72	0	2552815..2553042	-	75	209695808	-	VSAL_I2383	-	hypothetical protein
2175	 42.89	+1	2553230..2554684	+	484	209695809	-	VSAL_I2384	-	peptidase
2176	 35.61	-1	2554711..2555061	+	116	209695810	-	VSAL_I2385	-	putative arsenate reductase
2177	 37.41	0	2555082..2555522	+	146	209695811	-	VSAL_I2386	-	hypothetical protein
2178	 39.01	0	2555609..2556805	-	398	209695812	-	VSAL_I2387	-	hypothetical protein
2179	 42.45	0	2557012..2558262	+	416	209695813	pyrP	VSAL_I2388	-	uracil permease
2180	 40.67	0	2558416..2559042	-	208	209695814	upp	VSAL_I2389	-	uracil phosphoribosyltransferase
2181	 42.17	0	2559268..2560308	+	346	209695815	purM	VSAL_I2390	-	phosphoribosylformylglycinamidine cyclo-ligase (phosphoribosyl-aminoimidazole synthetase)
2182	 40.16	0	2560436..2561080	+	214	209695816	purN	VSAL_I2391	-	phosphoribosylglycinamide formyltransferase
2183	 40.82	0	2561138..2561965	-	275	209695817	-	VSAL_I2392	-	putative amidotransferase
2184	 40.38	0	2562000..2562581	-	193	209695818	gmhA	VSAL_I2393	-	phosphoheptose isomerase
2185	 35.94	-1	2562847..2563728	+	293	209695819	-	VSAL_I2394	-	transposase
2186	 42.20	0	2563944..2566391	+	815	209695820	fadE	VSAL_I2395	-	acyl-coenzyme A dehydrogenase
2187	 31.07	-2	2566470..2566646	-	58	209695821	-	VSAL_I2396	-	hypothetical protein
2188	 37.93	0	2566806..2568068	-	420	209695822	-	VSAL_I2397	-	hypothetical protein
2189	 39.62	0	2568079..2568810	-	243	209695823	dnaQ	VSAL_I2398	-	DNA polymerase III, epsilon chain
2190	 44.30	+1	2568848..2569321	+	157	209695824	rnhA	VSAL_I2399	-	Ribonuclease H
2191	 39.65	0	2569318..2570061	-	247	209695825	-	VSAL_I2400	-	hypothetical protein
2192	 39.79	0	2570113..2570871	+	252	209695826	-	VSAL_I2401	-	putative metallo-beta-lactamase
2193	 40.15	0	2570958..2572511	+	517	209695827	mltD	VSAL_I2402	-	membrane-bound lytic murein transglycosylase D precursor
2194	 39.65	0	2572870..2574357	-	495	209695828	-	VSAL_I2404	-	transposase
2195	 36.21	-1	2574429..2574776	-	115	209695829	-	VSAL_I2405	-	transposase
2196	 37.78	0	2574773..2575087	-	104	209695830	-	VSAL_I2406	-	transposase
2197	 37.31	0	2575504..2576358	-	284	209695831	-	VSAL_I2407	-	putative nuclease
2198	 40.12	0	2576424..2576762	-	112	209695832	glnB	VSAL_I2408	-	nitrogen regulatory protein P-II
2199	 42.63	+1	2576855..2577166	-	103	209695833	-	VSAL_I2409	-	cytochrome c-552
2200	 40.09	0	2577219..2578550	-	443	209695834	tilS	VSAL_I2410	-	tRNA(Ile)-lysidine synthase
2201	 39.48	0	2578658..2579617	-	319	209695835	accA	VSAL_I2411	-	acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
2202	 41.67	0	2579669..2583148	-	1159	209695836	dnaE	VSAL_I2412	-	DNA polymerase III, alpha chain
2203	 40.87	0	2583148..2583771	-	207	209695837	rnhB	VSAL_I2413	-	ribonuclease HII
2204	 39.32	0	2583776..2584927	-	383	209695838	lpxB	VSAL_I2414	-	lipid-A-disaccharide synthase
2205	 39.67	0	2585004..2585792	-	262	209695839	lpxA	VSAL_I2415	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase
2206	 38.54	0	2585795..2586274	-	159	209695840	fabZ	VSAL_I2416	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
2207	 40.49	0	2586375..2587394	-	339	209695841	lpxD	VSAL_I2417	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2208	 37.79	0	2587403..2587918	-	171	209695842	-	VSAL_I2418	-	outer membrane protein
2209	 38.41	0	2587994..2590414	-	806	209695843	yaeT	VSAL_I2419	-	outer membrane protein assembly factor
2210	 38.78	0	2590443..2591801	-	452	209695844	ecfE	VSAL_I2420	-	protease EcfE
2211	 39.90	0	2591804..2593006	-	400	209695845	dxr	VSAL_I2421	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2212	 38.33	0	2593115..2593954	-	279	209695846	cdsA	VSAL_I2422	-	phosphatidate cytidylyltransferase
2213	 39.41	0	2593958..2594731	-	257	209695847	uppS	VSAL_I2423	-	undecaprenyl pyrophosphate synthetase
2214	 37.99	0	2594855..2595412	-	185	209695848	frr	VSAL_I2424	-	ribosome recycling factor
2215	 43.99	+1	2595447..2596178	-	243	209695849	pyrH	VSAL_I2425	-	uridylate kinase
2216	 43.23	+1	2596349..2597197	-	282	209695850	-	VSAL_I2426	-	elongation factor TS
2217	 42.08	0	2597330..2598061	-	243	209695851	rpsB	VSAL_I2427	-	30S ribosomal protein S2
2218	 38.77	0	2598427..2599254	+	275	209695852	-	VSAL_I2428	-	methionine aminopeptidase
2219	 40.01	0	2599448..2602099	+	883	209695853	glnD	VSAL_I2429	-	[protein-PII] uridylyltransferase
2220	 35.94	-1	2602193..2603074	+	293	209695854	-	VSAL_I2430	-	transposase
2221	 34.65	-1	2603230..2603610	+	126	209695855	-	VSAL_I2431	-	hypothetical protein
2222	 41.75	0	2603684..2604634	-	316	209695856	secF	VSAL_I2432	-	protein-export membrane protein SecF
2223	 42.54	0	2604648..2606504	-	618	209695857	secD	VSAL_I2433	-	protein-export membrane protein SecD
2224	 39.64	0	2606558..2606890	-	110	209695858	-	VSAL_I2434	-	putative membrane subunit of preprotein translocase
2225	 41.84	0	2606984..2608111	-	375	209695859	tgt	VSAL_I2435	-	queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)
2226	 40.65	0	2608304..2609356	-	350	209695860	queA	VSAL_I2436	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
2227	 36.94	0	2609599..2610042	+	147	209695861	-	VSAL_I2437	-	hypothetical protein
2228	 43.34	+1	2610139..2611467	-	442	209695862	aceA	VSAL_I2438	-	isocitrate lyase
2229	 41.00	0	2611482..2613086	-	534	209695863	aceB	VSAL_I2439	-	malate synthase A
2230	 39.00	0	2613672..2614571	-	299	209695864	-	VSAL_I2440	-	transcriptional regulator, putative hydrogen peroxide-inducible regulon activator
2231	 45.16	+1	2614720..2615328	+	202	209695865	-	VSAL_I2441	-	putative peroxidase/antioxidant
2232	 40.73	0	2615595..2616338	+	247	209695866	-	VSAL_I2442	-	copper homeostasis protein CutC
2233	 36.89	0	2616405..2616770	-	121	209695867	-	VSAL_I2443	-	hypothetical protein
2234	 35.71	-1	2616815..2617444	-	209	209695868	-	VSAL_I2444	-	accessory colonization factor precursor AcfA
2235	 36.57	0	2617733..2618659	+	308	209695869	-	VSAL_I2445	-	HTH-type transcriptional regulator, LysR family
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.