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Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2135 44.23 +1 2516525..2516836 + 103 209695769 flgM VSAL_I2342 - negative regulator of flagellin synthesis FlgM, anti-sigma28 factor 2136 36.60 0 2516889..2517317 + 142 209695770 flgN VSAL_I2343 - polar flagellar FlgN, putative chaperone 2137 40.46 0 2517869..2518303 - 144 209695771 - VSAL_I2344 - putative lipoprotein 2138 37.42 0 2518312..2518947 - 211 209695772 - VSAL_I2345 - hypothetical protein 2139 37.55 0 2519120..2520256 + 378 209695773 - VSAL_I2346 - hypothetical protein 2140 33.59 -1 2520393..2521541 + 382 209695774 - VSAL_I2347 - hypothetical protein 2141 31.80 -2 2521547..2522329 + 260 209695775 - VSAL_I2348 - putative membrane associated GGDEF protein 2142 37.29 0 2522480..2522656 + 58 209695776 - VSAL_I2349 - hypothetical protein 2143 40.42 0 2522708..2524132 - 474 209695777 gltX VSAL_I2350 - glutamyl-tRNA synthetase 2144 34.72 -1 2524318..2525109 - 263 209695778 - VSAL_I2351 - putative lipoprotein 2145 41.54 0 2526803..2528812 - 669 209695779 - VSAL_I2353 - NAD-dependent DNA ligase 2146 39.37 0 2528903..2529829 - 308 209695780 - VSAL_I2354 - cell division protein ZipA 2147 37.98 0 2530101..2530853 + 250 209695781 cysZ VSAL_I2355 - sulfate transport protein CysZ 2148 42.52 0 2531018..2531986 + 322 209695782 cysK VSAL_I2356 - cysteine synthase A 2149 41.86 0 2532306..2532563 + 85 209695783 ptsH VSAL_I2357 - phosphocarrier protein Hpr, histidine-containing protein (PTS system) 2150 40.46 0 2532621..2534345 + 574 209695784 ptsI VSAL_I2358 - phosphoenolpyruvate-protein phosphotransferase enzyme I (PTS system) 2151 40.59 0 2534422..2534931 + 169 209695785 crr VSAL_I2359 - glucose-specific phosphotransferase enzyme IIA component (PTS system) 2152 39.74 0 2535025..2535930 - 301 209695786 - VSAL_I2360 - putative Dyp-type peroxidase 2153 39.23 0 2536014..2536403 - 129 209695787 - VSAL_I2361 - hypothetical protein 2154 37.28 0 2536415..2536870 - 151 209695788 - VSAL_I2362 - inner membrane protein 2155 32.49 -2 2537072..2537428 + 118 209695789 - VSAL_I2363 - membrane protein 2156 40.28 0 2537639..2538214 - 191 209695790 napC VSAL_I2364 - cytochrome c-type protein NapC 2157 41.35 0 2538247..2538720 - 157 209695791 napB VSAL_I2365 - cytochrome C-type protein NapB precursor 2158 35.44 -1 2541276..2541560 - 94 209695792 - VSAL_I2367 - NapD protein 2159 40.85 0 2541560..2542078 - 172 209695793 - VSAL_I2368 - ferredoxin-type protein NapF 2160 37.06 0 2542267..2543958 + 563 209695794 narQ VSAL_I2369 - nitrate/nitrite sensor protein NarQ 2161 38.40 0 2543982..2544593 + 203 209695795 narP VSAL_I2370 - nitrate/nitrite response regulator protein NarP 2162 36.31 -1 2544595..2544930 + 111 209695796 - VSAL_I2371 - putative lipoprotein 2163 40.43 0 2545014..2545295 - 93 209695797 - VSAL_I2372 - hypothetical protein 2164 50.18 +2 2545461..2545745 - 94 209695798 - VSAL_I2373 - hypothetical protein 2165 34.65 -1 2545924..2546226 + 100 209695799 - VSAL_I2374 - putative arsenate reductase 2166 43.21 +1 2546317..2547450 + 377 209695800 dapE VSAL_I2375 - succinyl-diaminopimelate desuccinylase 2167 39.16 0 2547510..2548178 + 222 209695801 - VSAL_I2376 - D-alanyl-D-alanine carboxypeptidase 2168 38.01 0 2548181..2548351 + 56 209695802 - VSAL_I2377 - hypothetical protein 2169 39.98 0 2548424..2549476 - 350 209695803 - VSAL_I2378 - NlpB/DapX lipoprotein 2170 40.70 0 2549488..2550369 - 293 209695804 dapA VSAL_I2379 - dihydrodipicolinate synthase 2171 36.93 0 2550645..2551172 + 175 209695805 gcvR VSAL_I2380 - glycine cleavage system transcriptional repressor (Gcv operon repressor) 2172 39.28 0 2551200..2551670 + 156 209695806 bcp VSAL_I2381 - putative peroxiredoxin bcp (thioredoxin reductase (bacterioferritin comigratory protein) 2173 39.42 0 2551746..2552813 - 355 209695807 - VSAL_I2382 - membrane protein 2174 37.72 0 2552815..2553042 - 75 209695808 - VSAL_I2383 - hypothetical protein 2175 42.89 +1 2553230..2554684 + 484 209695809 - VSAL_I2384 - peptidase 2176 35.61 -1 2554711..2555061 + 116 209695810 - VSAL_I2385 - putative arsenate reductase 2177 37.41 0 2555082..2555522 + 146 209695811 - VSAL_I2386 - hypothetical protein 2178 39.01 0 2555609..2556805 - 398 209695812 - VSAL_I2387 - hypothetical protein 2179 42.45 0 2557012..2558262 + 416 209695813 pyrP VSAL_I2388 - uracil permease 2180 40.67 0 2558416..2559042 - 208 209695814 upp VSAL_I2389 - uracil phosphoribosyltransferase 2181 42.17 0 2559268..2560308 + 346 209695815 purM VSAL_I2390 - phosphoribosylformylglycinamidine cyclo-ligase (phosphoribosyl-aminoimidazole synthetase) 2182 40.16 0 2560436..2561080 + 214 209695816 purN VSAL_I2391 - phosphoribosylglycinamide formyltransferase 2183 40.82 0 2561138..2561965 - 275 209695817 - VSAL_I2392 - putative amidotransferase 2184 40.38 0 2562000..2562581 - 193 209695818 gmhA VSAL_I2393 - phosphoheptose isomerase 2185 35.94 -1 2562847..2563728 + 293 209695819 - VSAL_I2394 - transposase 2186 42.20 0 2563944..2566391 + 815 209695820 fadE VSAL_I2395 - acyl-coenzyme A dehydrogenase 2187 31.07 -2 2566470..2566646 - 58 209695821 - VSAL_I2396 - hypothetical protein 2188 37.93 0 2566806..2568068 - 420 209695822 - VSAL_I2397 - hypothetical protein 2189 39.62 0 2568079..2568810 - 243 209695823 dnaQ VSAL_I2398 - DNA polymerase III, epsilon chain 2190 44.30 +1 2568848..2569321 + 157 209695824 rnhA VSAL_I2399 - Ribonuclease H 2191 39.65 0 2569318..2570061 - 247 209695825 - VSAL_I2400 - hypothetical protein 2192 39.79 0 2570113..2570871 + 252 209695826 - VSAL_I2401 - putative metallo-beta-lactamase 2193 40.15 0 2570958..2572511 + 517 209695827 mltD VSAL_I2402 - membrane-bound lytic murein transglycosylase D precursor 2194 39.65 0 2572870..2574357 - 495 209695828 - VSAL_I2404 - transposase 2195 36.21 -1 2574429..2574776 - 115 209695829 - VSAL_I2405 - transposase 2196 37.78 0 2574773..2575087 - 104 209695830 - VSAL_I2406 - transposase 2197 37.31 0 2575504..2576358 - 284 209695831 - VSAL_I2407 - putative nuclease 2198 40.12 0 2576424..2576762 - 112 209695832 glnB VSAL_I2408 - nitrogen regulatory protein P-II 2199 42.63 +1 2576855..2577166 - 103 209695833 - VSAL_I2409 - cytochrome c-552 2200 40.09 0 2577219..2578550 - 443 209695834 tilS VSAL_I2410 - tRNA(Ile)-lysidine synthase 2201 39.48 0 2578658..2579617 - 319 209695835 accA VSAL_I2411 - acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 2202 41.67 0 2579669..2583148 - 1159 209695836 dnaE VSAL_I2412 - DNA polymerase III, alpha chain 2203 40.87 0 2583148..2583771 - 207 209695837 rnhB VSAL_I2413 - ribonuclease HII 2204 39.32 0 2583776..2584927 - 383 209695838 lpxB VSAL_I2414 - lipid-A-disaccharide synthase 2205 39.67 0 2585004..2585792 - 262 209695839 lpxA VSAL_I2415 - acyl-[acyl-carrier-protein]--UDP-N-acetylglucos amine O-acyltransferase 2206 38.54 0 2585795..2586274 - 159 209695840 fabZ VSAL_I2416 - (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase 2207 40.49 0 2586375..2587394 - 339 209695841 lpxD VSAL_I2417 - UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2208 37.79 0 2587403..2587918 - 171 209695842 - VSAL_I2418 - outer membrane protein 2209 38.41 0 2587994..2590414 - 806 209695843 yaeT VSAL_I2419 - outer membrane protein assembly factor 2210 38.78 0 2590443..2591801 - 452 209695844 ecfE VSAL_I2420 - protease EcfE 2211 39.90 0 2591804..2593006 - 400 209695845 dxr VSAL_I2421 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2212 38.33 0 2593115..2593954 - 279 209695846 cdsA VSAL_I2422 - phosphatidate cytidylyltransferase 2213 39.41 0 2593958..2594731 - 257 209695847 uppS VSAL_I2423 - undecaprenyl pyrophosphate synthetase 2214 37.99 0 2594855..2595412 - 185 209695848 frr VSAL_I2424 - ribosome recycling factor 2215 43.99 +1 2595447..2596178 - 243 209695849 pyrH VSAL_I2425 - uridylate kinase 2216 43.23 +1 2596349..2597197 - 282 209695850 - VSAL_I2426 - elongation factor TS 2217 42.08 0 2597330..2598061 - 243 209695851 rpsB VSAL_I2427 - 30S ribosomal protein S2 2218 38.77 0 2598427..2599254 + 275 209695852 - VSAL_I2428 - methionine aminopeptidase 2219 40.01 0 2599448..2602099 + 883 209695853 glnD VSAL_I2429 - [protein-PII] uridylyltransferase 2220 35.94 -1 2602193..2603074 + 293 209695854 - VSAL_I2430 - transposase 2221 34.65 -1 2603230..2603610 + 126 209695855 - VSAL_I2431 - hypothetical protein 2222 41.75 0 2603684..2604634 - 316 209695856 secF VSAL_I2432 - protein-export membrane protein SecF 2223 42.54 0 2604648..2606504 - 618 209695857 secD VSAL_I2433 - protein-export membrane protein SecD 2224 39.64 0 2606558..2606890 - 110 209695858 - VSAL_I2434 - putative membrane subunit of preprotein translocase 2225 41.84 0 2606984..2608111 - 375 209695859 tgt VSAL_I2435 - queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase) 2226 40.65 0 2608304..2609356 - 350 209695860 queA VSAL_I2436 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2227 36.94 0 2609599..2610042 + 147 209695861 - VSAL_I2437 - hypothetical protein 2228 43.34 +1 2610139..2611467 - 442 209695862 aceA VSAL_I2438 - isocitrate lyase 2229 41.00 0 2611482..2613086 - 534 209695863 aceB VSAL_I2439 - malate synthase A 2230 39.00 0 2613672..2614571 - 299 209695864 - VSAL_I2440 - transcriptional regulator, putative hydrogen peroxide-inducible regulon activator 2231 45.16 +1 2614720..2615328 + 202 209695865 - VSAL_I2441 - putative peroxidase/antioxidant 2232 40.73 0 2615595..2616338 + 247 209695866 - VSAL_I2442 - copper homeostasis protein CutC 2233 36.89 0 2616405..2616770 - 121 209695867 - VSAL_I2443 - hypothetical protein 2234 35.71 -1 2616815..2617444 - 209 209695868 - VSAL_I2444 - accessory colonization factor precursor AcfA 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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