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Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2092 40.74 0 2468734..2469408 + 224 209695726 - VSAL_I2294 - putative type IV pilus assembly (PilZ) protein 2093 40.67 0 2469423..2470553 - 376 209695727 flhB VSAL_I2295 - polar flagellar assembly protein FlhB 2094 41.38 0 2470584..2471366 - 260 209695728 fliR VSAL_I2296 - polar flagellar assembly protein FliR 2095 41.48 0 2471429..2471698 - 89 209695729 fliQ VSAL_I2297 - polar flagellar assembly protein FliR 2096 43.10 +1 2471708..2472577 - 289 209695730 fliP VSAL_I2298 - polar flagellar assembly protein FliP 2097 38.46 0 2472564..2472953 - 129 209695731 fliO VSAL_I2299 - polar flagellar assembly protein FliO 2098 42.71 +1 2472985..2473368 - 127 209695732 fliN VSAL_I2300 - polar flagellar switch protein FliN 2099 41.57 0 2473391..2474422 - 343 209695733 fliM VSAL_I2301 - polar flagellar switch protein FliM (flagellar motor switch protein FliM) 2100 40.74 0 2474430..2474915 - 161 209695734 fliL VSAL_I2302 - polar flagellar protein FliL 2101 41.75 0 2474973..2476196 - 407 209695735 fliK VSAL_I2303 - polar flagellar hook-length control protein FliK 2102 37.21 0 2476388..2476825 - 145 209695736 fliJ VSAL_I2304 - polar flagellar assembly protein FliJ 2103 45.53 +1 2476882..2478201 - 439 209695737 fliI VSAL_I2305 - polar flagellum-specific ATP synthase FliI 2104 40.85 0 2478202..2478999 - 265 209695738 fliH VSAL_I2306 - polar flagellar assembly protein FliH 2105 43.40 +1 2479133..2480185 - 350 209695739 fliG VSAL_I2307 - polar flagellar motor switch protein FliG 2106 41.03 0 2481932..2482243 - 103 209695740 fliE VSAL_I2309 - flagellar hook-basal body complex protein FliE 2107 42.03 0 2482344..2483780 - 478 209695741 flaM VSAL_I2310 - sigma-54 dependent response regulator 2108 42.43 0 2483783..2484826 - 347 209695742 flaL VSAL_I2311 - histidine kinase 2109 40.82 0 2484953..2486434 - 493 209695743 flaK VSAL_I2312 - sigma 54 dependent transcription regulator 2110 40.63 0 2486631..2487041 - 136 209695744 flaJ VSAL_I2313 - polar flagellar protein FliS (polar flagellar protein FlaJ) 2111 32.99 -2 2487057..2487347 - 96 209695745 flaI VSAL_I2314 - polar flagellar protein FlaI 2112 42.61 +1 2487381..2489321 - 646 209695746 fliDP VSAL_I2315 - polar flagellar hook-associated protein 2 (HAP2) (flagellar cap protein) 2113 43.80 +1 2489892..2491028 - 378 209695747 flaE VSAL_I2317 - flagellin subunit E 2114 42.55 +1 2491276..2492403 - 375 209695748 flaD VSAL_I2318 - flagellin subunit D 2115 42.10 0 2492863..2494071 - 402 209695749 flaC VSAL_I2319 - flagellin subunit C 2116 35.94 -1 2496656..2497537 + 293 209695750 - VSAL_I2323 - transposase 2117 37.78 0 2498240..2498554 - 104 209695751 - VSAL_I2324 - transposase 2118 43.47 +1 2498727..2499860 - 377 209695752 flaB VSAL_I2325 - flagellin subunit B 2119 35.19 -1 2499918..2500295 - 125 209695753 - VSAL_I2326 - hypothetical protein 2120 42.19 0 2500546..2501685 - 379 209695754 flaA VSAL_I2327 - flagellin subunit A 2121 38.27 0 2502247..2503440 - 397 209695755 flgL VSAL_I2328 - flagellar hook-associated protein type 3 FlgL 2122 43.70 +1 2503457..2505337 - 626 209695756 flgM VSAL_I2329 - flagellar hook-associated protein type 3 FlgM 2123 41.34 0 2505589..2506587 - 332 209695757 flgJ VSAL_I2330 - peptidoglycan hydrolase FlgJ 2124 43.23 +1 2506739..2507860 - 373 209695758 flgI VSAL_I2331 - flagellar P-ring protein 2 precursor (basal body P-ring protein 2) 2125 42.49 0 2507863..2508648 - 261 209695759 flgH VSAL_I2332 - flagellar L-ring protein 1 precursor (basal body L-ring protein 1) 2126 41.95 0 2508661..2509449 - 262 209695760 flgG VSAL_I2333 - flagellar basal-body rod protein FlgG (distal rod protein) 2127 43.11 +1 2509504..2510229 - 241 209695761 flgF VSAL_I2334 - flagellar basal-body rod protein FlgF 2128 41.80 0 2510467..2511765 - 432 209695762 flgE VSAL_I2335 - flagellar hook protein FlgE 2129 42.48 0 2511930..2512640 - 236 209695763 flgD VSAL_I2336 - flagellar basal-body rod protein FlgD 2130 41.01 0 2512656..2513072 - 138 209695764 flgC VSAL_I2337 - flagellar basal-body rod protein FlgC 2131 41.67 0 2513075..2513470 - 131 209695765 flgB VSAL_I2338 - flagellar basal-body rod protein FlgB 2132 39.49 0 2513665..2514492 - 275 209695766 cheR VSAL_I2339 - chemotaxis protein methyltransferase CheR 2133 38.65 0 2514564..2515484 - 306 209695767 cheV VSAL_I2340 - chemotaxis protein methyltransferase CheV 2134 39.09 0 2515559..2516305 + 248 209695768 flgA VSAL_I2341 - polar flagellar basal-body P-ring formation protein FlgA 2135 44.23 +1 2516525..2516836 + 103 209695769 flgM VSAL_I2342 - negative regulator of flagellin synthesis FlgM, anti-sigma28 factor 2136 36.60 0 2516889..2517317 + 142 209695770 flgN VSAL_I2343 - polar flagellar FlgN, putative chaperone 2137 40.46 0 2517869..2518303 - 144 209695771 - VSAL_I2344 - putative lipoprotein 2138 37.42 0 2518312..2518947 - 211 209695772 - VSAL_I2345 - hypothetical protein 2139 37.55 0 2519120..2520256 + 378 209695773 - VSAL_I2346 - hypothetical protein 2140 33.59 -1 2520393..2521541 + 382 209695774 - VSAL_I2347 - hypothetical protein 2141 31.80 -2 2521547..2522329 + 260 209695775 - VSAL_I2348 - putative membrane associated GGDEF protein 2142 37.29 0 2522480..2522656 + 58 209695776 - VSAL_I2349 - hypothetical protein 2143 40.42 0 2522708..2524132 - 474 209695777 gltX VSAL_I2350 - glutamyl-tRNA synthetase 2144 34.72 -1 2524318..2525109 - 263 209695778 - VSAL_I2351 - putative lipoprotein 2145 41.54 0 2526803..2528812 - 669 209695779 - VSAL_I2353 - NAD-dependent DNA ligase 2146 39.37 0 2528903..2529829 - 308 209695780 - VSAL_I2354 - cell division protein ZipA 2147 37.98 0 2530101..2530853 + 250 209695781 cysZ VSAL_I2355 - sulfate transport protein CysZ 2148 42.52 0 2531018..2531986 + 322 209695782 cysK VSAL_I2356 - cysteine synthase A 2149 41.86 0 2532306..2532563 + 85 209695783 ptsH VSAL_I2357 - phosphocarrier protein Hpr, histidine-containing protein (PTS system) 2150 40.46 0 2532621..2534345 + 574 209695784 ptsI VSAL_I2358 - phosphoenolpyruvate-protein phosphotransferase enzyme I (PTS system) 2151 40.59 0 2534422..2534931 + 169 209695785 crr VSAL_I2359 - glucose-specific phosphotransferase enzyme IIA component (PTS system) 2152 39.74 0 2535025..2535930 - 301 209695786 - VSAL_I2360 - putative Dyp-type peroxidase 2153 39.23 0 2536014..2536403 - 129 209695787 - VSAL_I2361 - hypothetical protein 2154 37.28 0 2536415..2536870 - 151 209695788 - VSAL_I2362 - inner membrane protein 2155 32.49 -2 2537072..2537428 + 118 209695789 - VSAL_I2363 - membrane protein 2156 40.28 0 2537639..2538214 - 191 209695790 napC VSAL_I2364 - cytochrome c-type protein NapC 2157 41.35 0 2538247..2538720 - 157 209695791 napB VSAL_I2365 - cytochrome C-type protein NapB precursor 2158 35.44 -1 2541276..2541560 - 94 209695792 - VSAL_I2367 - NapD protein 2159 40.85 0 2541560..2542078 - 172 209695793 - VSAL_I2368 - ferredoxin-type protein NapF 2160 37.06 0 2542267..2543958 + 563 209695794 narQ VSAL_I2369 - nitrate/nitrite sensor protein NarQ 2161 38.40 0 2543982..2544593 + 203 209695795 narP VSAL_I2370 - nitrate/nitrite response regulator protein NarP 2162 36.31 -1 2544595..2544930 + 111 209695796 - VSAL_I2371 - putative lipoprotein 2163 40.43 0 2545014..2545295 - 93 209695797 - VSAL_I2372 - hypothetical protein 2164 50.18 +2 2545461..2545745 - 94 209695798 - VSAL_I2373 - hypothetical protein 2165 34.65 -1 2545924..2546226 + 100 209695799 - VSAL_I2374 - putative arsenate reductase 2166 43.21 +1 2546317..2547450 + 377 209695800 dapE VSAL_I2375 - succinyl-diaminopimelate desuccinylase 2167 39.16 0 2547510..2548178 + 222 209695801 - VSAL_I2376 - D-alanyl-D-alanine carboxypeptidase 2168 38.01 0 2548181..2548351 + 56 209695802 - VSAL_I2377 - hypothetical protein 2169 39.98 0 2548424..2549476 - 350 209695803 - VSAL_I2378 - NlpB/DapX lipoprotein 2170 40.70 0 2549488..2550369 - 293 209695804 dapA VSAL_I2379 - dihydrodipicolinate synthase 2171 36.93 0 2550645..2551172 + 175 209695805 gcvR VSAL_I2380 - glycine cleavage system transcriptional repressor (Gcv operon repressor) 2172 39.28 0 2551200..2551670 + 156 209695806 bcp VSAL_I2381 - putative peroxiredoxin bcp (thioredoxin reductase (bacterioferritin comigratory protein) 2173 39.42 0 2551746..2552813 - 355 209695807 - VSAL_I2382 - membrane protein 2174 37.72 0 2552815..2553042 - 75 209695808 - VSAL_I2383 - hypothetical protein 2175 42.89 +1 2553230..2554684 + 484 209695809 - VSAL_I2384 - peptidase 2176 35.61 -1 2554711..2555061 + 116 209695810 - VSAL_I2385 - putative arsenate reductase 2177 37.41 0 2555082..2555522 + 146 209695811 - VSAL_I2386 - hypothetical protein 2178 39.01 0 2555609..2556805 - 398 209695812 - VSAL_I2387 - hypothetical protein 2179 42.45 0 2557012..2558262 + 416 209695813 pyrP VSAL_I2388 - uracil permease 2180 40.67 0 2558416..2559042 - 208 209695814 upp VSAL_I2389 - uracil phosphoribosyltransferase 2181 42.17 0 2559268..2560308 + 346 209695815 purM VSAL_I2390 - phosphoribosylformylglycinamidine cyclo-ligase (phosphoribosyl-aminoimidazole synthetase) 2182 40.16 0 2560436..2561080 + 214 209695816 purN VSAL_I2391 - phosphoribosylglycinamide formyltransferase 2183 40.82 0 2561138..2561965 - 275 209695817 - VSAL_I2392 - putative amidotransferase 2184 40.38 0 2562000..2562581 - 193 209695818 gmhA VSAL_I2393 - phosphoheptose isomerase 2185 35.94 -1 2562847..2563728 + 293 209695819 - VSAL_I2394 - transposase 2186 42.20 0 2563944..2566391 + 815 209695820 fadE VSAL_I2395 - acyl-coenzyme A dehydrogenase 2187 31.07 -2 2566470..2566646 - 58 209695821 - VSAL_I2396 - hypothetical protein 2188 37.93 0 2566806..2568068 - 420 209695822 - VSAL_I2397 - hypothetical protein 2189 39.62 0 2568079..2568810 - 243 209695823 dnaQ VSAL_I2398 - DNA polymerase III, epsilon chain 2190 44.30 +1 2568848..2569321 + 157 209695824 rnhA VSAL_I2399 - Ribonuclease H 2191 39.65 0 2569318..2570061 - 247 209695825 - VSAL_I2400 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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