version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2064 39.65 0 2436860..2438347 - 495 209695698 - VSAL_I2264 - transposase 2065 38.10 0 2438762..2439076 - 104 209695699 - VSAL_I2266b - transposase 2066 43.15 +1 2441416..2442759 - 447 209695700 fadI VSAL_I2268 - 3-ketoacyl-CoA thiolase (fatty acid oxidation complex subunit beta) (beta-ketothiolase) (acetyl-CoA acyltransferase) 2067 41.51 0 2443564..2444811 + 415 209695701 - VSAL_I2269 - outer membrane protein transport protein 2068 42.44 0 2445467..2446783 + 438 209695702 - VSAL_I2270 - outer membrane protein transport protein 2069 37.93 0 2446974..2447582 + 202 209695703 - VSAL_I2271 - inner membrane protein 2070 38.93 0 2447622..2448407 - 261 209695704 vacJ VSAL_I2272 - lipoprotein VacJ precursor 2071 39.59 0 2448561..2449775 - 404 209695705 - VSAL_I2273 - putative cytochrome c-type biogenesis protein precursor 2072 38.46 0 2449772..2450278 - 168 209695706 ccmH VSAL_I2274 - cytochrome c-type biogenesis protein CcmH precursor 2073 39.16 0 2450284..2450832 - 182 209695707 dsbE VSAL_I2275 - thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG) 2074 42.47 0 2450835..2452793 - 652 209695708 ccmF VSAL_I2276 - cytochrome c-type biogenesis protein CcmF 2075 42.86 +1 2452835..2453275 - 146 209695709 ccmE VSAL_I2277 - cytochrome c-type biogenesis protein CcmE (cytochrome c maturation protein E) (heme chaperone CcmE) 2076 34.30 -1 2453272..2453478 - 68 209695710 ccmD VSAL_I2278 - cytochrome c-type biogenesis protein CcmD 2077 41.57 0 2453502..2454254 - 250 209695711 ccmC VSAL_I2279 - cytochrome c-type biogenesis protein CcmC 2078 41.55 0 2454304..2454972 - 222 209695712 ccmB VSAL_I2280 - cytochrome c-type biogenesis protein CcmB 2079 40.00 0 2454976..2455590 - 204 209695713 ccmA VSAL_I2281 - cytochrome c biogenesis ATP-binding export protein CcmA 2080 38.74 0 2455861..2456322 - 153 209695714 - VSAL_I2282 - hypothetical protein 2081 38.38 0 2456322..2456816 - 164 209695715 cheW VSAL_I2283 - chemotaxis protein CheW 2082 39.19 0 2456845..2457936 - 363 209695716 - VSAL_I2284 - cheW-like protein 2083 39.45 0 2457936..2458703 - 255 209695717 - VSAL_I2285 - putative chromosome segregation protein 2084 43.74 +1 2458713..2459855 - 380 209695718 cheB VSAL_I2286 - chemotaxis response regulator protein-glutamate methylesterase 2085 42.96 +1 2459871..2462042 - 723 209695719 cheA VSAL_I2287 - chemotaxis protein CheA 2086 40.69 0 2462052..2462771 - 239 209695720 cheZ VSAL_I2288 - chemotaxis protein CheZ 2087 37.94 0 2462804..2463172 - 122 209695721 cheY VSAL_I2289 - chemotaxis protein CheY 2088 38.80 0 2463223..2463954 - 243 209695722 fliA VSAL_I2290 - RNA polymerase sigma factor for flagellar regulon FliA 2089 42.42 0 2463947..2464837 - 296 209695723 flhG VSAL_I2291 - flagellar biosynthesis protein FlhG (flagellar number regulator) 2090 41.24 0 2464834..2466288 - 484 209695724 flhF VSAL_I2292 - flagellar biosynthesis protein FlhF 2091 42.22 0 2466352..2468445 - 697 209695725 flhA VSAL_I2293 - polar flagellar assembly protein FlhA 2092 40.74 0 2468734..2469408 + 224 209695726 - VSAL_I2294 - putative type IV pilus assembly (PilZ) protein 2093 40.67 0 2469423..2470553 - 376 209695727 flhB VSAL_I2295 - polar flagellar assembly protein FlhB 2094 41.38 0 2470584..2471366 - 260 209695728 fliR VSAL_I2296 - polar flagellar assembly protein FliR 2095 41.48 0 2471429..2471698 - 89 209695729 fliQ VSAL_I2297 - polar flagellar assembly protein FliR 2096 43.10 +1 2471708..2472577 - 289 209695730 fliP VSAL_I2298 - polar flagellar assembly protein FliP 2097 38.46 0 2472564..2472953 - 129 209695731 fliO VSAL_I2299 - polar flagellar assembly protein FliO 2098 42.71 +1 2472985..2473368 - 127 209695732 fliN VSAL_I2300 - polar flagellar switch protein FliN 2099 41.57 0 2473391..2474422 - 343 209695733 fliM VSAL_I2301 - polar flagellar switch protein FliM (flagellar motor switch protein FliM) 2100 40.74 0 2474430..2474915 - 161 209695734 fliL VSAL_I2302 - polar flagellar protein FliL 2101 41.75 0 2474973..2476196 - 407 209695735 fliK VSAL_I2303 - polar flagellar hook-length control protein FliK 2102 37.21 0 2476388..2476825 - 145 209695736 fliJ VSAL_I2304 - polar flagellar assembly protein FliJ 2103 45.53 +1 2476882..2478201 - 439 209695737 fliI VSAL_I2305 - polar flagellum-specific ATP synthase FliI 2104 40.85 0 2478202..2478999 - 265 209695738 fliH VSAL_I2306 - polar flagellar assembly protein FliH 2105 43.40 +1 2479133..2480185 - 350 209695739 fliG VSAL_I2307 - polar flagellar motor switch protein FliG 2106 41.03 0 2481932..2482243 - 103 209695740 fliE VSAL_I2309 - flagellar hook-basal body complex protein FliE 2107 42.03 0 2482344..2483780 - 478 209695741 flaM VSAL_I2310 - sigma-54 dependent response regulator 2108 42.43 0 2483783..2484826 - 347 209695742 flaL VSAL_I2311 - histidine kinase 2109 40.82 0 2484953..2486434 - 493 209695743 flaK VSAL_I2312 - sigma 54 dependent transcription regulator 2110 40.63 0 2486631..2487041 - 136 209695744 flaJ VSAL_I2313 - polar flagellar protein FliS (polar flagellar protein FlaJ) 2111 32.99 -2 2487057..2487347 - 96 209695745 flaI VSAL_I2314 - polar flagellar protein FlaI 2112 42.61 +1 2487381..2489321 - 646 209695746 fliDP VSAL_I2315 - polar flagellar hook-associated protein 2 (HAP2) (flagellar cap protein) 2113 43.80 +1 2489892..2491028 - 378 209695747 flaE VSAL_I2317 - flagellin subunit E 2114 42.55 +1 2491276..2492403 - 375 209695748 flaD VSAL_I2318 - flagellin subunit D 2115 42.10 0 2492863..2494071 - 402 209695749 flaC VSAL_I2319 - flagellin subunit C 2116 35.94 -1 2496656..2497537 + 293 209695750 - VSAL_I2323 - transposase 2117 37.78 0 2498240..2498554 - 104 209695751 - VSAL_I2324 - transposase 2118 43.47 +1 2498727..2499860 - 377 209695752 flaB VSAL_I2325 - flagellin subunit B 2119 35.19 -1 2499918..2500295 - 125 209695753 - VSAL_I2326 - hypothetical protein 2120 42.19 0 2500546..2501685 - 379 209695754 flaA VSAL_I2327 - flagellin subunit A 2121 38.27 0 2502247..2503440 - 397 209695755 flgL VSAL_I2328 - flagellar hook-associated protein type 3 FlgL 2122 43.70 +1 2503457..2505337 - 626 209695756 flgM VSAL_I2329 - flagellar hook-associated protein type 3 FlgM 2123 41.34 0 2505589..2506587 - 332 209695757 flgJ VSAL_I2330 - peptidoglycan hydrolase FlgJ 2124 43.23 +1 2506739..2507860 - 373 209695758 flgI VSAL_I2331 - flagellar P-ring protein 2 precursor (basal body P-ring protein 2) 2125 42.49 0 2507863..2508648 - 261 209695759 flgH VSAL_I2332 - flagellar L-ring protein 1 precursor (basal body L-ring protein 1) 2126 41.95 0 2508661..2509449 - 262 209695760 flgG VSAL_I2333 - flagellar basal-body rod protein FlgG (distal rod protein) 2127 43.11 +1 2509504..2510229 - 241 209695761 flgF VSAL_I2334 - flagellar basal-body rod protein FlgF 2128 41.80 0 2510467..2511765 - 432 209695762 flgE VSAL_I2335 - flagellar hook protein FlgE 2129 42.48 0 2511930..2512640 - 236 209695763 flgD VSAL_I2336 - flagellar basal-body rod protein FlgD 2130 41.01 0 2512656..2513072 - 138 209695764 flgC VSAL_I2337 - flagellar basal-body rod protein FlgC 2131 41.67 0 2513075..2513470 - 131 209695765 flgB VSAL_I2338 - flagellar basal-body rod protein FlgB 2132 39.49 0 2513665..2514492 - 275 209695766 cheR VSAL_I2339 - chemotaxis protein methyltransferase CheR 2133 38.65 0 2514564..2515484 - 306 209695767 cheV VSAL_I2340 - chemotaxis protein methyltransferase CheV 2134 39.09 0 2515559..2516305 + 248 209695768 flgA VSAL_I2341 - polar flagellar basal-body P-ring formation protein FlgA 2135 44.23 +1 2516525..2516836 + 103 209695769 flgM VSAL_I2342 - negative regulator of flagellin synthesis FlgM, anti-sigma28 factor 2136 36.60 0 2516889..2517317 + 142 209695770 flgN VSAL_I2343 - polar flagellar FlgN, putative chaperone 2137 40.46 0 2517869..2518303 - 144 209695771 - VSAL_I2344 - putative lipoprotein 2138 37.42 0 2518312..2518947 - 211 209695772 - VSAL_I2345 - hypothetical protein 2139 37.55 0 2519120..2520256 + 378 209695773 - VSAL_I2346 - hypothetical protein 2140 33.59 -1 2520393..2521541 + 382 209695774 - VSAL_I2347 - hypothetical protein 2141 31.80 -2 2521547..2522329 + 260 209695775 - VSAL_I2348 - putative membrane associated GGDEF protein 2142 37.29 0 2522480..2522656 + 58 209695776 - VSAL_I2349 - hypothetical protein 2143 40.42 0 2522708..2524132 - 474 209695777 gltX VSAL_I2350 - glutamyl-tRNA synthetase 2144 34.72 -1 2524318..2525109 - 263 209695778 - VSAL_I2351 - putative lipoprotein 2145 41.54 0 2526803..2528812 - 669 209695779 - VSAL_I2353 - NAD-dependent DNA ligase 2146 39.37 0 2528903..2529829 - 308 209695780 - VSAL_I2354 - cell division protein ZipA 2147 37.98 0 2530101..2530853 + 250 209695781 cysZ VSAL_I2355 - sulfate transport protein CysZ 2148 42.52 0 2531018..2531986 + 322 209695782 cysK VSAL_I2356 - cysteine synthase A 2149 41.86 0 2532306..2532563 + 85 209695783 ptsH VSAL_I2357 - phosphocarrier protein Hpr, histidine-containing protein (PTS system) 2150 40.46 0 2532621..2534345 + 574 209695784 ptsI VSAL_I2358 - phosphoenolpyruvate-protein phosphotransferase enzyme I (PTS system) 2151 40.59 0 2534422..2534931 + 169 209695785 crr VSAL_I2359 - glucose-specific phosphotransferase enzyme IIA component (PTS system) 2152 39.74 0 2535025..2535930 - 301 209695786 - VSAL_I2360 - putative Dyp-type peroxidase 2153 39.23 0 2536014..2536403 - 129 209695787 - VSAL_I2361 - hypothetical protein 2154 37.28 0 2536415..2536870 - 151 209695788 - VSAL_I2362 - inner membrane protein 2155 32.49 -2 2537072..2537428 + 118 209695789 - VSAL_I2363 - membrane protein 2156 40.28 0 2537639..2538214 - 191 209695790 napC VSAL_I2364 - cytochrome c-type protein NapC 2157 41.35 0 2538247..2538720 - 157 209695791 napB VSAL_I2365 - cytochrome C-type protein NapB precursor 2158 35.44 -1 2541276..2541560 - 94 209695792 - VSAL_I2367 - NapD protein 2159 40.85 0 2541560..2542078 - 172 209695793 - VSAL_I2368 - ferredoxin-type protein NapF 2160 37.06 0 2542267..2543958 + 563 209695794 narQ VSAL_I2369 - nitrate/nitrite sensor protein NarQ 2161 38.40 0 2543982..2544593 + 203 209695795 narP VSAL_I2370 - nitrate/nitrite response regulator protein NarP 2162 36.31 -1 2544595..2544930 + 111 209695796 - VSAL_I2371 - putative lipoprotein 2163 40.43 0 2545014..2545295 - 93 209695797 - VSAL_I2372 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.