IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.44   STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2058	 36.84	0	2430852..2431079	+	75	209695692	-	VSAL_I2257	-	ferrous iron transport protein FeoA
2059	 39.31	0	2431081..2433357	+	758	209695693	feoB	VSAL_I2258	-	ferrous iron transport protein FeoB
2060	 39.92	0	2433354..2433596	+	80	209695694	-	VSAL_I2259	-	hypothetical protein
2061	 37.78	0	2433749..2434063	+	104	209695695	-	VSAL_I2260	-	transposase
2062	 36.49	0	2434060..2434407	+	115	209695696	-	VSAL_I2261	-	transposase
2063	 39.78	0	2434479..2435966	+	495	209695697	-	VSAL_I2262	-	transposase
2064	 39.65	0	2436860..2438347	-	495	209695698	-	VSAL_I2264	-	transposase
2065	 38.10	0	2438762..2439076	-	104	209695699	-	VSAL_I2266b	-	transposase
2066	 43.15	+1	2441416..2442759	-	447	209695700	fadI	VSAL_I2268	-	3-ketoacyl-CoA thiolase (fatty acid oxidation complex subunit beta) (beta-ketothiolase) (acetyl-CoA acyltransferase)
2067	 41.51	0	2443564..2444811	+	415	209695701	-	VSAL_I2269	-	outer membrane protein transport protein
2068	 42.44	0	2445467..2446783	+	438	209695702	-	VSAL_I2270	-	outer membrane protein transport protein
2069	 37.93	0	2446974..2447582	+	202	209695703	-	VSAL_I2271	-	inner membrane protein
2070	 38.93	0	2447622..2448407	-	261	209695704	vacJ	VSAL_I2272	-	lipoprotein VacJ precursor
2071	 39.59	0	2448561..2449775	-	404	209695705	-	VSAL_I2273	-	putative cytochrome c-type biogenesis protein precursor
2072	 38.46	0	2449772..2450278	-	168	209695706	ccmH	VSAL_I2274	-	cytochrome c-type biogenesis protein CcmH precursor
2073	 39.16	0	2450284..2450832	-	182	209695707	dsbE	VSAL_I2275	-	thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG)
2074	 42.47	0	2450835..2452793	-	652	209695708	ccmF	VSAL_I2276	-	cytochrome c-type biogenesis protein CcmF
2075	 42.86	+1	2452835..2453275	-	146	209695709	ccmE	VSAL_I2277	-	cytochrome c-type biogenesis protein CcmE (cytochrome c maturation protein E) (heme chaperone CcmE)
2076	 34.30	-1	2453272..2453478	-	68	209695710	ccmD	VSAL_I2278	-	cytochrome c-type biogenesis protein CcmD
2077	 41.57	0	2453502..2454254	-	250	209695711	ccmC	VSAL_I2279	-	cytochrome c-type biogenesis protein CcmC
2078	 41.55	0	2454304..2454972	-	222	209695712	ccmB	VSAL_I2280	-	cytochrome c-type biogenesis protein CcmB
2079	 40.00	0	2454976..2455590	-	204	209695713	ccmA	VSAL_I2281	-	cytochrome c biogenesis ATP-binding export protein CcmA
2080	 38.74	0	2455861..2456322	-	153	209695714	-	VSAL_I2282	-	hypothetical protein
2081	 38.38	0	2456322..2456816	-	164	209695715	cheW	VSAL_I2283	-	chemotaxis protein CheW
2082	 39.19	0	2456845..2457936	-	363	209695716	-	VSAL_I2284	-	cheW-like protein
2083	 39.45	0	2457936..2458703	-	255	209695717	-	VSAL_I2285	-	putative chromosome segregation protein
2084	 43.74	+1	2458713..2459855	-	380	209695718	cheB	VSAL_I2286	-	chemotaxis response regulator protein-glutamate methylesterase
2085	 42.96	+1	2459871..2462042	-	723	209695719	cheA	VSAL_I2287	-	chemotaxis protein CheA
2086	 40.69	0	2462052..2462771	-	239	209695720	cheZ	VSAL_I2288	-	chemotaxis protein CheZ
2087	 37.94	0	2462804..2463172	-	122	209695721	cheY	VSAL_I2289	-	chemotaxis protein CheY
2088	 38.80	0	2463223..2463954	-	243	209695722	fliA	VSAL_I2290	-	RNA polymerase sigma factor for flagellar regulon FliA
2089	 42.42	0	2463947..2464837	-	296	209695723	flhG	VSAL_I2291	-	flagellar biosynthesis protein FlhG (flagellar number regulator)
2090	 41.24	0	2464834..2466288	-	484	209695724	flhF	VSAL_I2292	-	flagellar biosynthesis protein FlhF
2091	 42.22	0	2466352..2468445	-	697	209695725	flhA	VSAL_I2293	-	polar flagellar assembly protein FlhA
2092	 40.74	0	2468734..2469408	+	224	209695726	-	VSAL_I2294	-	putative type IV pilus assembly (PilZ) protein
2093	 40.67	0	2469423..2470553	-	376	209695727	flhB	VSAL_I2295	-	polar flagellar assembly protein FlhB
2094	 41.38	0	2470584..2471366	-	260	209695728	fliR	VSAL_I2296	-	polar flagellar assembly protein FliR
2095	 41.48	0	2471429..2471698	-	89	209695729	fliQ	VSAL_I2297	-	polar flagellar assembly protein FliR
2096	 43.10	+1	2471708..2472577	-	289	209695730	fliP	VSAL_I2298	-	polar flagellar assembly protein FliP
2097	 38.46	0	2472564..2472953	-	129	209695731	fliO	VSAL_I2299	-	polar flagellar assembly protein FliO
2098	 42.71	+1	2472985..2473368	-	127	209695732	fliN	VSAL_I2300	-	polar flagellar switch protein FliN
2099	 41.57	0	2473391..2474422	-	343	209695733	fliM	VSAL_I2301	-	polar flagellar switch protein FliM (flagellar motor switch protein FliM)
2100	 40.74	0	2474430..2474915	-	161	209695734	fliL	VSAL_I2302	-	polar flagellar protein FliL
2101	 41.75	0	2474973..2476196	-	407	209695735	fliK	VSAL_I2303	-	polar flagellar hook-length control protein FliK
2102	 37.21	0	2476388..2476825	-	145	209695736	fliJ	VSAL_I2304	-	polar flagellar assembly protein FliJ
2103	 45.53	+1	2476882..2478201	-	439	209695737	fliI	VSAL_I2305	-	polar flagellum-specific ATP synthase FliI
2104	 40.85	0	2478202..2478999	-	265	209695738	fliH	VSAL_I2306	-	polar flagellar assembly protein FliH
2105	 43.40	+1	2479133..2480185	-	350	209695739	fliG	VSAL_I2307	-	polar flagellar motor switch protein FliG
2106	 41.03	0	2481932..2482243	-	103	209695740	fliE	VSAL_I2309	-	flagellar hook-basal body complex protein FliE
2107	 42.03	0	2482344..2483780	-	478	209695741	flaM	VSAL_I2310	-	sigma-54 dependent response regulator
2108	 42.43	0	2483783..2484826	-	347	209695742	flaL	VSAL_I2311	-	histidine kinase
2109	 40.82	0	2484953..2486434	-	493	209695743	flaK	VSAL_I2312	-	sigma 54 dependent transcription regulator
2110	 40.63	0	2486631..2487041	-	136	209695744	flaJ	VSAL_I2313	-	polar flagellar protein FliS (polar flagellar protein FlaJ)
2111	 32.99	-2	2487057..2487347	-	96	209695745	flaI	VSAL_I2314	-	polar flagellar protein FlaI
2112	 42.61	+1	2487381..2489321	-	646	209695746	fliDP	VSAL_I2315	-	polar flagellar hook-associated protein 2 (HAP2) (flagellar cap protein)
2113	 43.80	+1	2489892..2491028	-	378	209695747	flaE	VSAL_I2317	-	flagellin subunit E
2114	 42.55	+1	2491276..2492403	-	375	209695748	flaD	VSAL_I2318	-	flagellin subunit D
2115	 42.10	0	2492863..2494071	-	402	209695749	flaC	VSAL_I2319	-	flagellin subunit C
2116	 35.94	-1	2496656..2497537	+	293	209695750	-	VSAL_I2323	-	transposase
2117	 37.78	0	2498240..2498554	-	104	209695751	-	VSAL_I2324	-	transposase
2118	 43.47	+1	2498727..2499860	-	377	209695752	flaB	VSAL_I2325	-	flagellin subunit B
2119	 35.19	-1	2499918..2500295	-	125	209695753	-	VSAL_I2326	-	hypothetical protein
2120	 42.19	0	2500546..2501685	-	379	209695754	flaA	VSAL_I2327	-	flagellin subunit A
2121	 38.27	0	2502247..2503440	-	397	209695755	flgL	VSAL_I2328	-	flagellar hook-associated protein type 3 FlgL
2122	 43.70	+1	2503457..2505337	-	626	209695756	flgM	VSAL_I2329	-	flagellar hook-associated protein type 3 FlgM
2123	 41.34	0	2505589..2506587	-	332	209695757	flgJ	VSAL_I2330	-	peptidoglycan hydrolase FlgJ
2124	 43.23	+1	2506739..2507860	-	373	209695758	flgI	VSAL_I2331	-	flagellar P-ring protein 2 precursor (basal body P-ring protein 2)
2125	 42.49	0	2507863..2508648	-	261	209695759	flgH	VSAL_I2332	-	flagellar L-ring protein 1 precursor (basal body L-ring protein 1)
2126	 41.95	0	2508661..2509449	-	262	209695760	flgG	VSAL_I2333	-	flagellar basal-body rod protein FlgG (distal rod protein)
2127	 43.11	+1	2509504..2510229	-	241	209695761	flgF	VSAL_I2334	-	flagellar basal-body rod protein FlgF
2128	 41.80	0	2510467..2511765	-	432	209695762	flgE	VSAL_I2335	-	flagellar hook protein FlgE
2129	 42.48	0	2511930..2512640	-	236	209695763	flgD	VSAL_I2336	-	flagellar basal-body rod protein FlgD
2130	 41.01	0	2512656..2513072	-	138	209695764	flgC	VSAL_I2337	-	flagellar basal-body rod protein FlgC
2131	 41.67	0	2513075..2513470	-	131	209695765	flgB	VSAL_I2338	-	flagellar basal-body rod protein FlgB
2132	 39.49	0	2513665..2514492	-	275	209695766	cheR	VSAL_I2339	-	chemotaxis protein methyltransferase CheR
2133	 38.65	0	2514564..2515484	-	306	209695767	cheV	VSAL_I2340	-	chemotaxis protein methyltransferase CheV
2134	 39.09	0	2515559..2516305	+	248	209695768	flgA	VSAL_I2341	-	polar flagellar basal-body P-ring formation protein FlgA
2135	 44.23	+1	2516525..2516836	+	103	209695769	flgM	VSAL_I2342	-	negative regulator of flagellin synthesis FlgM, anti-sigma28 factor
2136	 36.60	0	2516889..2517317	+	142	209695770	flgN	VSAL_I2343	-	polar flagellar FlgN, putative chaperone
2137	 40.46	0	2517869..2518303	-	144	209695771	-	VSAL_I2344	-	putative lipoprotein
2138	 37.42	0	2518312..2518947	-	211	209695772	-	VSAL_I2345	-	hypothetical protein
2139	 37.55	0	2519120..2520256	+	378	209695773	-	VSAL_I2346	-	hypothetical protein
2140	 33.59	-1	2520393..2521541	+	382	209695774	-	VSAL_I2347	-	hypothetical protein
2141	 31.80	-2	2521547..2522329	+	260	209695775	-	VSAL_I2348	-	putative membrane associated GGDEF protein
2142	 37.29	0	2522480..2522656	+	58	209695776	-	VSAL_I2349	-	hypothetical protein
2143	 40.42	0	2522708..2524132	-	474	209695777	gltX	VSAL_I2350	-	glutamyl-tRNA synthetase
2144	 34.72	-1	2524318..2525109	-	263	209695778	-	VSAL_I2351	-	putative lipoprotein
2145	 41.54	0	2526803..2528812	-	669	209695779	-	VSAL_I2353	-	NAD-dependent DNA ligase
2146	 39.37	0	2528903..2529829	-	308	209695780	-	VSAL_I2354	-	cell division protein ZipA
2147	 37.98	0	2530101..2530853	+	250	209695781	cysZ	VSAL_I2355	-	sulfate transport protein CysZ
2148	 42.52	0	2531018..2531986	+	322	209695782	cysK	VSAL_I2356	-	cysteine synthase A
2149	 41.86	0	2532306..2532563	+	85	209695783	ptsH	VSAL_I2357	-	phosphocarrier protein Hpr, histidine-containing protein (PTS system)
2150	 40.46	0	2532621..2534345	+	574	209695784	ptsI	VSAL_I2358	-	phosphoenolpyruvate-protein phosphotransferase enzyme I (PTS system)
2151	 40.59	0	2534422..2534931	+	169	209695785	crr	VSAL_I2359	-	glucose-specific phosphotransferase enzyme IIA component (PTS system)
2152	 39.74	0	2535025..2535930	-	301	209695786	-	VSAL_I2360	-	putative Dyp-type peroxidase
2153	 39.23	0	2536014..2536403	-	129	209695787	-	VSAL_I2361	-	hypothetical protein
2154	 37.28	0	2536415..2536870	-	151	209695788	-	VSAL_I2362	-	inner membrane protein
2155	 32.49	-2	2537072..2537428	+	118	209695789	-	VSAL_I2363	-	membrane protein
2156	 40.28	0	2537639..2538214	-	191	209695790	napC	VSAL_I2364	-	cytochrome c-type protein NapC
2157	 41.35	0	2538247..2538720	-	157	209695791	napB	VSAL_I2365	-	cytochrome C-type protein NapB precursor
39.44	MEAN

3.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.