IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2014	 33.15	-2	2379264..2379809	-	181	209695648	-	VSAL_I2211	-	putative lipoprotein
2015	 41.89	0	2379927..2380148	-	73	209695649	cspD	VSAL_I2212	-	cold shock-like protein CspD
2016	 36.76	0	2380544..2380864	+	106	209695650	clpS	VSAL_I2213	-	ATP-dependent Clp protease adaptor protein ClpS
2017	 39.24	0	2380907..2383159	+	750	209695651	clpA	VSAL_I2214	-	ATP-dependent Clp protease ATP-binding subunit ClpA
2018	 40.18	0	2383273..2383491	-	72	209695652	infA	VSAL_I2215	-	translation initiation factor IF-1
2019	 37.09	0	2383581..2384273	-	230	209695653	-	VSAL_I2216	-	putative arginine-tRNA-protein transferase
2020	 39.38	0	2384277..2384987	-	236	209695654	aat	VSAL_I2217	-	leucyl/phenylalanyl-tRNA-protein transferase
2021	 39.41	0	2385186..2386469	+	427	209695655	aroA	VSAL_I2218	-	3-phosphoshikimate 1-carboxyvinyltransferase
2022	 43.41	+1	2386625..2387299	+	224	209695656	cmk	VSAL_I2219	-	cytidylate kinase
2023	 43.91	+1	2387396..2389069	+	557	209695657	rpsA	VSAL_I2220	-	30S ribosomal protein S1
2024	 41.49	0	2389129..2389410	+	93	209695658	ihfB	VSAL_I2222	-	integration host factor beta-subunit
2025	 35.09	-1	2389599..2389883	+	94	209695659	yciS	VSAL_I2223	-	inner membrane protein
2026	 38.29	0	2389891..2391060	+	389	209695660	-	VSAL_I2224	-	hypothetical protein
2027	 40.85	0	2391116..2391820	+	234	209695661	pyrF	VSAL_I2225	-	orotidine 5'-phosphate decarboxylase
2028	 40.08	0	2391897..2393957	-	686	209695662	metG	VSAL_I2226	-	methionyl-tRNA synthetase
2029	 39.70	0	2394090..2395157	+	355	209695663	-	VSAL_I2227	-	hypothetical protein
2030	 38.43	0	2395269..2395916	+	215	209695664	udk	VSAL_I2228	-	uridine kinase (uridine monophosphokinase) (cytidin monophosphokinase)
2031	 35.23	-1	2396081..2398240	+	719	209695665	-	VSAL_I2229	-	putative outer membrane assembly protein
2032	 39.64	0	2398309..2398911	-	200	209695666	btuR	VSAL_I2230	-	cob(I)yrinic acid a,c-diamide adenosyltransferase (cob(I)alamin adenosyltransferase) (corrinoid adenosyltransferase)
2033	 33.48	-1	2399172..2400494	+	440	209695667	-	VSAL_I2231	-	putative metal dependent phosphohydrolase
2034	 40.50	0	2400552..2402099	-	515	209695668	-	VSAL_I2232	-	putative sulfate transporter
2035	 42.36	0	2402274..2405321	-	1015	209695669	rne	VSAL_I2233	-	ribonuclease E
2036	 38.29	0	2405765..2406712	+	315	209695670	rluC	VSAL_I2234	-	ribosomal large subunit pseudouridine synthase C (rRNA uridine isomerase C) (rRNA pseudouridylate synthase C)
2037	 36.25	-1	2406791..2407372	-	193	209695671	-	VSAL_I2235	-	Maf-like protein
2038	 36.97	0	2407506..2408027	+	173	209695672	-	VSAL_I2236	-	hypothetical protein
2039	 45.61	+1	2408044..2408214	+	56	209695673	rpmF	VSAL_I2237	-	50S ribosomal protein L32
2040	 41.81	0	2408225..2409250	+	341	209695674	plsX	VSAL_I2238	-	fatty acid/phospholipid synthesis protein PlsX
2041	 42.35	0	2409256..2410209	+	317	209695675	fabH	VSAL_I2239	-	3-oxoacyl-[acyl-carrier-protein] synthase III
2042	 41.67	0	2410270..2411193	+	307	209695676	fabD	VSAL_I2240	-	malonyl CoA-acyl carrier protein transacylase
2043	 42.55	+1	2411210..2411947	+	245	209695677	fabG	VSAL_I2241	-	3-oxoacyl-[acyl-carrier protein] reductase
2044	 44.36	+1	2412442..2413683	+	413	209695678	fabF	VSAL_I2242	-	3-oxoacyl-[acyl-carrier-protein] synthase II
2045	 38.29	0	2413782..2414588	+	268	209695679	-	VSAL_I2243	-	aminodeoxychorismate lyase
2046	 36.20	-1	2414582..2415592	+	336	209695680	-	VSAL_I2244	-	aminodeoxychorismate lyase
2047	 42.65	+1	2415595..2416227	+	210	209695681	tmk	VSAL_I2245	-	thymidylate kinase
2048	 38.07	0	2416217..2417188	+	323	209695682	-	VSAL_I2246	-	putative DNA polymerase III, delta' subunit
2049	 37.74	0	2417190..2417960	+	256	209695683	-	VSAL_I2247	-	putative TatD-related deoxyribonuclease
2050	 37.78	0	2418149..2418463	+	104	209695684	-	VSAL_I2248	-	transposase
2051	 36.21	-1	2418460..2418807	+	115	209695685	-	VSAL_I2249	-	transposase
2052	 39.52	0	2418879..2420366	+	495	209695686	-	VSAL_I2250	-	transposase
2053	 35.94	-1	2420806..2421687	+	293	209695687	-	VSAL_I2251	-	transposase
2054	 42.28	0	2421738..2423168	+	476	209695688	ptsG	VSAL_I2252	-	PTS system, glucose-specific EIIBC component [includes: glucose permease IIC component; glucose-specific phosphotransferase enzyme II component]
2055	 36.76	0	2423227..2423868	-	213	209695689	-	VSAL_I2253	-	hypothetical protein
2056	 38.65	0	2424041..2425507	-	488	209695690	-	VSAL_I2254	-	putative sodium-dependent transporter
2057	 37.11	0	2425889..2426470	-	193	209695691	-	VSAL_I2255	-	hypothetical protein
2058	 36.84	0	2430852..2431079	+	75	209695692	-	VSAL_I2257	-	ferrous iron transport protein FeoA
2059	 39.31	0	2431081..2433357	+	758	209695693	feoB	VSAL_I2258	-	ferrous iron transport protein FeoB
2060	 39.92	0	2433354..2433596	+	80	209695694	-	VSAL_I2259	-	hypothetical protein
2061	 37.78	0	2433749..2434063	+	104	209695695	-	VSAL_I2260	-	transposase
2062	 36.49	0	2434060..2434407	+	115	209695696	-	VSAL_I2261	-	transposase
2063	 39.78	0	2434479..2435966	+	495	209695697	-	VSAL_I2262	-	transposase
2064	 39.65	0	2436860..2438347	-	495	209695698	-	VSAL_I2264	-	transposase
2065	 38.10	0	2438762..2439076	-	104	209695699	-	VSAL_I2266b	-	transposase
2066	 43.15	+1	2441416..2442759	-	447	209695700	fadI	VSAL_I2268	-	3-ketoacyl-CoA thiolase (fatty acid oxidation complex subunit beta) (beta-ketothiolase) (acetyl-CoA acyltransferase)
2067	 41.51	0	2443564..2444811	+	415	209695701	-	VSAL_I2269	-	outer membrane protein transport protein
2068	 42.44	0	2445467..2446783	+	438	209695702	-	VSAL_I2270	-	outer membrane protein transport protein
2069	 37.93	0	2446974..2447582	+	202	209695703	-	VSAL_I2271	-	inner membrane protein
2070	 38.93	0	2447622..2448407	-	261	209695704	vacJ	VSAL_I2272	-	lipoprotein VacJ precursor
2071	 39.59	0	2448561..2449775	-	404	209695705	-	VSAL_I2273	-	putative cytochrome c-type biogenesis protein precursor
2072	 38.46	0	2449772..2450278	-	168	209695706	ccmH	VSAL_I2274	-	cytochrome c-type biogenesis protein CcmH precursor
2073	 39.16	0	2450284..2450832	-	182	209695707	dsbE	VSAL_I2275	-	thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG)
2074	 42.47	0	2450835..2452793	-	652	209695708	ccmF	VSAL_I2276	-	cytochrome c-type biogenesis protein CcmF
2075	 42.86	+1	2452835..2453275	-	146	209695709	ccmE	VSAL_I2277	-	cytochrome c-type biogenesis protein CcmE (cytochrome c maturation protein E) (heme chaperone CcmE)
2076	 34.30	-1	2453272..2453478	-	68	209695710	ccmD	VSAL_I2278	-	cytochrome c-type biogenesis protein CcmD
2077	 41.57	0	2453502..2454254	-	250	209695711	ccmC	VSAL_I2279	-	cytochrome c-type biogenesis protein CcmC
2078	 41.55	0	2454304..2454972	-	222	209695712	ccmB	VSAL_I2280	-	cytochrome c-type biogenesis protein CcmB
2079	 40.00	0	2454976..2455590	-	204	209695713	ccmA	VSAL_I2281	-	cytochrome c biogenesis ATP-binding export protein CcmA
2080	 38.74	0	2455861..2456322	-	153	209695714	-	VSAL_I2282	-	hypothetical protein
2081	 38.38	0	2456322..2456816	-	164	209695715	cheW	VSAL_I2283	-	chemotaxis protein CheW
2082	 39.19	0	2456845..2457936	-	363	209695716	-	VSAL_I2284	-	cheW-like protein
2083	 39.45	0	2457936..2458703	-	255	209695717	-	VSAL_I2285	-	putative chromosome segregation protein
2084	 43.74	+1	2458713..2459855	-	380	209695718	cheB	VSAL_I2286	-	chemotaxis response regulator protein-glutamate methylesterase
2085	 42.96	+1	2459871..2462042	-	723	209695719	cheA	VSAL_I2287	-	chemotaxis protein CheA
2086	 40.69	0	2462052..2462771	-	239	209695720	cheZ	VSAL_I2288	-	chemotaxis protein CheZ
2087	 37.94	0	2462804..2463172	-	122	209695721	cheY	VSAL_I2289	-	chemotaxis protein CheY
2088	 38.80	0	2463223..2463954	-	243	209695722	fliA	VSAL_I2290	-	RNA polymerase sigma factor for flagellar regulon FliA
2089	 42.42	0	2463947..2464837	-	296	209695723	flhG	VSAL_I2291	-	flagellar biosynthesis protein FlhG (flagellar number regulator)
2090	 41.24	0	2464834..2466288	-	484	209695724	flhF	VSAL_I2292	-	flagellar biosynthesis protein FlhF
2091	 42.22	0	2466352..2468445	-	697	209695725	flhA	VSAL_I2293	-	polar flagellar assembly protein FlhA
2092	 40.74	0	2468734..2469408	+	224	209695726	-	VSAL_I2294	-	putative type IV pilus assembly (PilZ) protein
2093	 40.67	0	2469423..2470553	-	376	209695727	flhB	VSAL_I2295	-	polar flagellar assembly protein FlhB
2094	 41.38	0	2470584..2471366	-	260	209695728	fliR	VSAL_I2296	-	polar flagellar assembly protein FliR
2095	 41.48	0	2471429..2471698	-	89	209695729	fliQ	VSAL_I2297	-	polar flagellar assembly protein FliR
2096	 43.10	+1	2471708..2472577	-	289	209695730	fliP	VSAL_I2298	-	polar flagellar assembly protein FliP
2097	 38.46	0	2472564..2472953	-	129	209695731	fliO	VSAL_I2299	-	polar flagellar assembly protein FliO
2098	 42.71	+1	2472985..2473368	-	127	209695732	fliN	VSAL_I2300	-	polar flagellar switch protein FliN
2099	 41.57	0	2473391..2474422	-	343	209695733	fliM	VSAL_I2301	-	polar flagellar switch protein FliM (flagellar motor switch protein FliM)
2100	 40.74	0	2474430..2474915	-	161	209695734	fliL	VSAL_I2302	-	polar flagellar protein FliL
2101	 41.75	0	2474973..2476196	-	407	209695735	fliK	VSAL_I2303	-	polar flagellar hook-length control protein FliK
2102	 37.21	0	2476388..2476825	-	145	209695736	fliJ	VSAL_I2304	-	polar flagellar assembly protein FliJ
2103	 45.53	+1	2476882..2478201	-	439	209695737	fliI	VSAL_I2305	-	polar flagellum-specific ATP synthase FliI
2104	 40.85	0	2478202..2478999	-	265	209695738	fliH	VSAL_I2306	-	polar flagellar assembly protein FliH
2105	 43.40	+1	2479133..2480185	-	350	209695739	fliG	VSAL_I2307	-	polar flagellar motor switch protein FliG
2106	 41.03	0	2481932..2482243	-	103	209695740	fliE	VSAL_I2309	-	flagellar hook-basal body complex protein FliE
2107	 42.03	0	2482344..2483780	-	478	209695741	flaM	VSAL_I2310	-	sigma-54 dependent response regulator
2108	 42.43	0	2483783..2484826	-	347	209695742	flaL	VSAL_I2311	-	histidine kinase
2109	 40.82	0	2484953..2486434	-	493	209695743	flaK	VSAL_I2312	-	sigma 54 dependent transcription regulator
2110	 40.63	0	2486631..2487041	-	136	209695744	flaJ	VSAL_I2313	-	polar flagellar protein FliS (polar flagellar protein FlaJ)
2111	 32.99	-2	2487057..2487347	-	96	209695745	flaI	VSAL_I2314	-	polar flagellar protein FlaI
2112	 42.61	+1	2487381..2489321	-	646	209695746	fliDP	VSAL_I2315	-	polar flagellar hook-associated protein 2 (HAP2) (flagellar cap protein)
2113	 43.80	+1	2489892..2491028	-	378	209695747	flaE	VSAL_I2317	-	flagellin subunit E
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.