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Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2005 43.15 +1 2367304..2367639 + 111 209695639 - VSAL_I2202 - hypothetical protein 2006 37.36 0 2367699..2367971 + 90 209695640 - VSAL_I2203 - hypothetical protein 2007 41.86 0 2368327..2368959 - 210 209695641 rluE VSAL_I2204 - ribosomal large subunit pseudouridine synthase E 2008 42.62 +1 2369130..2371358 + 742 209695642 icd VSAL_I2205 - isocitrate dehydrogenase [NADP] 2009 37.22 0 2371466..2372983 - 505 209695643 - VSAL_I2206 - putative sporulation protein 2010 40.11 0 2372995..2374263 - 422 209695644 - VSAL_I2207 - hypothetical protein 2011 39.07 0 2374331..2376265 - 644 209695645 prkA VSAL_I2208 - putative PrkA serine protein kinase 2012 44.17 +1 2376454..2377311 - 285 209695646 folD VSAL_I2209 - FolD bifunctional protein (includes: methylenetetrahydrofolate dehydrogenase; methenyltetrahydrofolate cyclohydrolase) 2013 39.78 0 2377762..2379219 + 485 209695647 - VSAL_I2210 - hypothetical protein 2014 33.15 -2 2379264..2379809 - 181 209695648 - VSAL_I2211 - putative lipoprotein 2015 41.89 0 2379927..2380148 - 73 209695649 cspD VSAL_I2212 - cold shock-like protein CspD 2016 36.76 0 2380544..2380864 + 106 209695650 clpS VSAL_I2213 - ATP-dependent Clp protease adaptor protein ClpS 2017 39.24 0 2380907..2383159 + 750 209695651 clpA VSAL_I2214 - ATP-dependent Clp protease ATP-binding subunit ClpA 2018 40.18 0 2383273..2383491 - 72 209695652 infA VSAL_I2215 - translation initiation factor IF-1 2019 37.09 0 2383581..2384273 - 230 209695653 - VSAL_I2216 - putative arginine-tRNA-protein transferase 2020 39.38 0 2384277..2384987 - 236 209695654 aat VSAL_I2217 - leucyl/phenylalanyl-tRNA-protein transferase 2021 39.41 0 2385186..2386469 + 427 209695655 aroA VSAL_I2218 - 3-phosphoshikimate 1-carboxyvinyltransferase 2022 43.41 +1 2386625..2387299 + 224 209695656 cmk VSAL_I2219 - cytidylate kinase 2023 43.91 +1 2387396..2389069 + 557 209695657 rpsA VSAL_I2220 - 30S ribosomal protein S1 2024 41.49 0 2389129..2389410 + 93 209695658 ihfB VSAL_I2222 - integration host factor beta-subunit 2025 35.09 -1 2389599..2389883 + 94 209695659 yciS VSAL_I2223 - inner membrane protein 2026 38.29 0 2389891..2391060 + 389 209695660 - VSAL_I2224 - hypothetical protein 2027 40.85 0 2391116..2391820 + 234 209695661 pyrF VSAL_I2225 - orotidine 5'-phosphate decarboxylase 2028 40.08 0 2391897..2393957 - 686 209695662 metG VSAL_I2226 - methionyl-tRNA synthetase 2029 39.70 0 2394090..2395157 + 355 209695663 - VSAL_I2227 - hypothetical protein 2030 38.43 0 2395269..2395916 + 215 209695664 udk VSAL_I2228 - uridine kinase (uridine monophosphokinase) (cytidin monophosphokinase) 2031 35.23 -1 2396081..2398240 + 719 209695665 - VSAL_I2229 - putative outer membrane assembly protein 2032 39.64 0 2398309..2398911 - 200 209695666 btuR VSAL_I2230 - cob(I)yrinic acid a,c-diamide adenosyltransferase (cob(I)alamin adenosyltransferase) (corrinoid adenosyltransferase) 2033 33.48 -1 2399172..2400494 + 440 209695667 - VSAL_I2231 - putative metal dependent phosphohydrolase 2034 40.50 0 2400552..2402099 - 515 209695668 - VSAL_I2232 - putative sulfate transporter 2035 42.36 0 2402274..2405321 - 1015 209695669 rne VSAL_I2233 - ribonuclease E 2036 38.29 0 2405765..2406712 + 315 209695670 rluC VSAL_I2234 - ribosomal large subunit pseudouridine synthase C (rRNA uridine isomerase C) (rRNA pseudouridylate synthase C) 2037 36.25 -1 2406791..2407372 - 193 209695671 - VSAL_I2235 - Maf-like protein 2038 36.97 0 2407506..2408027 + 173 209695672 - VSAL_I2236 - hypothetical protein 2039 45.61 +1 2408044..2408214 + 56 209695673 rpmF VSAL_I2237 - 50S ribosomal protein L32 2040 41.81 0 2408225..2409250 + 341 209695674 plsX VSAL_I2238 - fatty acid/phospholipid synthesis protein PlsX 2041 42.35 0 2409256..2410209 + 317 209695675 fabH VSAL_I2239 - 3-oxoacyl-[acyl-carrier-protein] synthase III 2042 41.67 0 2410270..2411193 + 307 209695676 fabD VSAL_I2240 - malonyl CoA-acyl carrier protein transacylase 2043 42.55 +1 2411210..2411947 + 245 209695677 fabG VSAL_I2241 - 3-oxoacyl-[acyl-carrier protein] reductase 2044 44.36 +1 2412442..2413683 + 413 209695678 fabF VSAL_I2242 - 3-oxoacyl-[acyl-carrier-protein] synthase II 2045 38.29 0 2413782..2414588 + 268 209695679 - VSAL_I2243 - aminodeoxychorismate lyase 2046 36.20 -1 2414582..2415592 + 336 209695680 - VSAL_I2244 - aminodeoxychorismate lyase 2047 42.65 +1 2415595..2416227 + 210 209695681 tmk VSAL_I2245 - thymidylate kinase 2048 38.07 0 2416217..2417188 + 323 209695682 - VSAL_I2246 - putative DNA polymerase III, delta' subunit 2049 37.74 0 2417190..2417960 + 256 209695683 - VSAL_I2247 - putative TatD-related deoxyribonuclease 2050 37.78 0 2418149..2418463 + 104 209695684 - VSAL_I2248 - transposase 2051 36.21 -1 2418460..2418807 + 115 209695685 - VSAL_I2249 - transposase 2052 39.52 0 2418879..2420366 + 495 209695686 - VSAL_I2250 - transposase 2053 35.94 -1 2420806..2421687 + 293 209695687 - VSAL_I2251 - transposase 2054 42.28 0 2421738..2423168 + 476 209695688 ptsG VSAL_I2252 - PTS system, glucose-specific EIIBC component [includes: glucose permease IIC component; glucose-specific phosphotransferase enzyme II component] 2055 36.76 0 2423227..2423868 - 213 209695689 - VSAL_I2253 - hypothetical protein 2056 38.65 0 2424041..2425507 - 488 209695690 - VSAL_I2254 - putative sodium-dependent transporter 2057 37.11 0 2425889..2426470 - 193 209695691 - VSAL_I2255 - hypothetical protein 2058 36.84 0 2430852..2431079 + 75 209695692 - VSAL_I2257 - ferrous iron transport protein FeoA 2059 39.31 0 2431081..2433357 + 758 209695693 feoB VSAL_I2258 - ferrous iron transport protein FeoB 2060 39.92 0 2433354..2433596 + 80 209695694 - VSAL_I2259 - hypothetical protein 2061 37.78 0 2433749..2434063 + 104 209695695 - VSAL_I2260 - transposase 2062 36.49 0 2434060..2434407 + 115 209695696 - VSAL_I2261 - transposase 2063 39.78 0 2434479..2435966 + 495 209695697 - VSAL_I2262 - transposase 2064 39.65 0 2436860..2438347 - 495 209695698 - VSAL_I2264 - transposase 2065 38.10 0 2438762..2439076 - 104 209695699 - VSAL_I2266b - transposase 2066 43.15 +1 2441416..2442759 - 447 209695700 fadI VSAL_I2268 - 3-ketoacyl-CoA thiolase (fatty acid oxidation complex subunit beta) (beta-ketothiolase) (acetyl-CoA acyltransferase) 2067 41.51 0 2443564..2444811 + 415 209695701 - VSAL_I2269 - outer membrane protein transport protein 2068 42.44 0 2445467..2446783 + 438 209695702 - VSAL_I2270 - outer membrane protein transport protein 2069 37.93 0 2446974..2447582 + 202 209695703 - VSAL_I2271 - inner membrane protein 2070 38.93 0 2447622..2448407 - 261 209695704 vacJ VSAL_I2272 - lipoprotein VacJ precursor 2071 39.59 0 2448561..2449775 - 404 209695705 - VSAL_I2273 - putative cytochrome c-type biogenesis protein precursor 2072 38.46 0 2449772..2450278 - 168 209695706 ccmH VSAL_I2274 - cytochrome c-type biogenesis protein CcmH precursor 2073 39.16 0 2450284..2450832 - 182 209695707 dsbE VSAL_I2275 - thiol:disulfide interchange protein DsbE (cytochrome c biogenesis protein CcmG) 2074 42.47 0 2450835..2452793 - 652 209695708 ccmF VSAL_I2276 - cytochrome c-type biogenesis protein CcmF 2075 42.86 +1 2452835..2453275 - 146 209695709 ccmE VSAL_I2277 - cytochrome c-type biogenesis protein CcmE (cytochrome c maturation protein E) (heme chaperone CcmE) 2076 34.30 -1 2453272..2453478 - 68 209695710 ccmD VSAL_I2278 - cytochrome c-type biogenesis protein CcmD 2077 41.57 0 2453502..2454254 - 250 209695711 ccmC VSAL_I2279 - cytochrome c-type biogenesis protein CcmC 2078 41.55 0 2454304..2454972 - 222 209695712 ccmB VSAL_I2280 - cytochrome c-type biogenesis protein CcmB 2079 40.00 0 2454976..2455590 - 204 209695713 ccmA VSAL_I2281 - cytochrome c biogenesis ATP-binding export protein CcmA 2080 38.74 0 2455861..2456322 - 153 209695714 - VSAL_I2282 - hypothetical protein 2081 38.38 0 2456322..2456816 - 164 209695715 cheW VSAL_I2283 - chemotaxis protein CheW 2082 39.19 0 2456845..2457936 - 363 209695716 - VSAL_I2284 - cheW-like protein 2083 39.45 0 2457936..2458703 - 255 209695717 - VSAL_I2285 - putative chromosome segregation protein 2084 43.74 +1 2458713..2459855 - 380 209695718 cheB VSAL_I2286 - chemotaxis response regulator protein-glutamate methylesterase 2085 42.96 +1 2459871..2462042 - 723 209695719 cheA VSAL_I2287 - chemotaxis protein CheA 2086 40.69 0 2462052..2462771 - 239 209695720 cheZ VSAL_I2288 - chemotaxis protein CheZ 2087 37.94 0 2462804..2463172 - 122 209695721 cheY VSAL_I2289 - chemotaxis protein CheY 2088 38.80 0 2463223..2463954 - 243 209695722 fliA VSAL_I2290 - RNA polymerase sigma factor for flagellar regulon FliA 2089 42.42 0 2463947..2464837 - 296 209695723 flhG VSAL_I2291 - flagellar biosynthesis protein FlhG (flagellar number regulator) 2090 41.24 0 2464834..2466288 - 484 209695724 flhF VSAL_I2292 - flagellar biosynthesis protein FlhF 2091 42.22 0 2466352..2468445 - 697 209695725 flhA VSAL_I2293 - polar flagellar assembly protein FlhA 2092 40.74 0 2468734..2469408 + 224 209695726 - VSAL_I2294 - putative type IV pilus assembly (PilZ) protein 2093 40.67 0 2469423..2470553 - 376 209695727 flhB VSAL_I2295 - polar flagellar assembly protein FlhB 2094 41.38 0 2470584..2471366 - 260 209695728 fliR VSAL_I2296 - polar flagellar assembly protein FliR 2095 41.48 0 2471429..2471698 - 89 209695729 fliQ VSAL_I2297 - polar flagellar assembly protein FliR 2096 43.10 +1 2471708..2472577 - 289 209695730 fliP VSAL_I2298 - polar flagellar assembly protein FliP 2097 38.46 0 2472564..2472953 - 129 209695731 fliO VSAL_I2299 - polar flagellar assembly protein FliO 2098 42.71 +1 2472985..2473368 - 127 209695732 fliN VSAL_I2300 - polar flagellar switch protein FliN 2099 41.57 0 2473391..2474422 - 343 209695733 fliM VSAL_I2301 - polar flagellar switch protein FliM (flagellar motor switch protein FliM) 2100 40.74 0 2474430..2474915 - 161 209695734 fliL VSAL_I2302 - polar flagellar protein FliL 2101 41.75 0 2474973..2476196 - 407 209695735 fliK VSAL_I2303 - polar flagellar hook-length control protein FliK 2102 37.21 0 2476388..2476825 - 145 209695736 fliJ VSAL_I2304 - polar flagellar assembly protein FliJ 2103 45.53 +1 2476882..2478201 - 439 209695737 fliI VSAL_I2305 - polar flagellum-specific ATP synthase FliI 2104 40.85 0 2478202..2478999 - 265 209695738 fliH VSAL_I2306 - polar flagellar assembly protein FliH 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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