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Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1941 39.58 0 2282975..2285038 - 687 209695575 - VSAL_I2134 - helicase IV 1942 40.54 0 2285204..2287408 + 734 209695576 - VSAL_I2135 - inner membrane protein 1943 38.31 0 2287475..2288620 - 381 209695577 nspC VSAL_I2136 - carboxynorspermidine decarboxylase 1944 42.33 0 2288695..2289939 - 414 209695578 - VSAL_I2137 - saccharopine dehydrogenase 1945 39.98 0 2289942..2292845 - 967 209695579 - VSAL_I2138 - putative diaminobutyrate--2-oxoglutarate aminotransferase 1946 39.28 0 2294246..2294800 - 184 209695580 pgsA VSAL_I2139 - cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferas (phosphatidylglycerophosphate synthase) 1947 38.86 0 2294845..2296671 - 608 209695581 uvrC VSAL_I2140 - UvrABC system protein C (excinuclease ABC subunit C) 1948 40.31 0 2296671..2297315 - 214 209695582 varA VSAL_I2141 - response regulator VarA 1949 37.68 0 2297501..2299870 - 789 209695583 polB VSAL_I2142 - DNA polymerase II 1950 35.14 -1 2299874..2300650 - 258 209695584 - VSAL_I2143 - hypothetical protein 1951 38.94 0 2300762..2302348 - 528 209695585 - VSAL_I2144 - putative sodium/proton antiporter 1952 42.51 0 2302858..2303271 + 137 209695586 - VSAL_I2145 - DNA binding protein, global metabolism regulator 1953 39.71 0 2303350..2304102 - 250 209695587 - VSAL_I2146 - putative MltA-interacting protein MipA 1954 33.69 -1 2304376..2305218 - 280 209695588 fadR VSAL_I2147 - fatty acid metabolism regulator protein 1955 39.35 0 2305666..2307261 + 531 209695589 - VSAL_I2148 - sodium/proton antiporter 1956 40.12 0 2307336..2307851 + 171 209695590 dsbB VSAL_I2149 - disulfide bond formation protein B (disulfide oxidoreductase) 1957 40.98 0 2307941..2308555 - 204 209695591 - VSAL_I2150 - hypothetical protein 1958 38.50 0 2308657..2309217 + 186 209695592 - VSAL_I2151 - membrane protein 1959 39.66 0 2309269..2310216 + 315 209695593 dusC VSAL_I2152 - tRNA-dihydrouridine synthase C 1960 34.22 -1 2310236..2311708 - 490 209695594 - VSAL_I2153 - membrane associated GGDEF protein 1961 37.56 0 2311829..2312656 - 275 209695595 - VSAL_I2154 - hypothetical protein 1962 41.56 0 2312740..2314683 - 647 209695596 topB VSAL_I2155 - DNA topoisomerase III 1963 41.52 0 2314770..2316773 - 667 209695597 fadH VSAL_I2156 - 2,4-dienoyl-CoA reductase [NADPH] 1964 39.81 0 2317002..2318855 + 617 209695598 sppA VSAL_I2157 - protease IV (endopeptidase IV) 1965 41.12 0 2318948..2319961 + 337 209695599 ansA VSAL_I2158 - L-asparaginase I 1966 42.03 0 2320044..2321159 - 371 209695600 - VSAL_I2159 - aspartate-semialdehyde dehydrogenase 1967 37.78 0 2323253..2323567 + 104 209695601 - VSAL_I2161 - transposase 1968 35.92 -1 2323564..2323911 + 115 209695602 - VSAL_I2162 - transposase 1969 39.65 0 2323983..2325470 + 495 209695603 - VSAL_I2163 - transposase 1970 39.28 0 2328370..2328840 + 156 209695604 - VSAL_I2165 - phosphohistidine phosphatase SixA 1971 41.76 0 2328885..2329418 - 177 209695605 - VSAL_I2166 - hypothetical protein 1972 40.32 0 2329458..2330402 + 314 209695606 - VSAL_I2167 - putative methyltransferase 1973 42.82 +1 2330804..2331889 + 361 209695607 aroC VSAL_I2168 - chorismate synthase (5-enolpyruvylshikimate-3-phosphat phospholyase) 1974 41.12 0 2332077..2332718 - 213 209695608 - VSAL_I2169 - inner membrane protein 1975 40.24 0 2332851..2333357 - 168 209695609 - VSAL_I2170 - putative MgtC/SapB transporter 1976 38.61 0 2333546..2334076 + 176 209695610 - VSAL_I2171 - hypothetical protein 1977 36.43 0 2334084..2334341 + 85 209695611 - VSAL_I2172 - hypothetical protein 1978 37.21 0 2334448..2335581 + 377 209695612 - VSAL_I2173 - hypothetical protein, GGDEF domain 1979 37.79 0 2335631..2336056 - 141 209695613 - VSAL_I2174 - hypothetical protein 1980 39.17 0 2336134..2337075 + 313 209695614 - VSAL_I2175 - lipid A biosynthesis acyltransferase 1981 43.40 +1 2337528..2338928 + 466 209695615 clcA VSAL_I2176 - H(+)/Cl(-) exchange transporter 1982 39.72 0 2339267..2340754 - 495 209695616 - VSAL_I2178 - transposase 1983 36.21 -1 2340826..2341173 - 115 209695617 - VSAL_I2179 - transposase 1984 37.78 0 2341170..2341484 - 104 209695618 - VSAL_I2180 - transposase 1985 38.52 0 2342095..2342904 - 269 209695619 rrmA VSAL_I2181 - ribosomal RNA large subunit methyltransferase A 1986 43.06 +1 2343403..2344461 + 352 209695620 - VSAL_I2182 - outer membrane protein, porin 1987 38.92 0 2344658..2345158 - 166 209695621 - VSAL_I2183 - hypothetical protein 1988 42.88 +1 2345262..2346926 - 554 209695622 fhs VSAL_I2184 - formate--tetrahydrofolate ligase (formyltetrahydrofolate synthetase) 1989 41.63 0 2348783..2349457 + 224 209695623 - VSAL_I2186 - HTH-type transcriptional regulator, two-component response regulator 1990 38.64 0 2349468..2349938 + 156 209695624 - VSAL_I2187 - hypothetical protein 1991 40.70 0 2349981..2350862 + 293 209695625 - VSAL_I2188 - putative phospholipase 1992 40.27 0 2350959..2352155 - 398 209695626 rhlE VSAL_I2189 - putative ATP-dependent RNA helicase 1993 42.96 +1 2352426..2353952 - 508 209695627 - VSAL_I2190 - integral membrane protein 1994 39.72 0 2353969..2354469 - 166 209695628 - VSAL_I2191 - membrane protein 1995 45.19 +1 2354605..2355591 - 328 209695629 - VSAL_I2192 - hypothetical protein 1996 39.06 0 2355915..2358008 - 697 209695630 - VSAL_I2193 - methyl-accepting chemotaxis protein 1997 36.83 0 2358242..2358670 + 142 209695631 - VSAL_I2194 - putative lipoprotein 1998 42.60 +1 2358786..2360156 - 456 209695632 purB VSAL_I2195 - adenylosuccinate lyase (adenylosuccinase) 1999 42.23 0 2360227..2360844 - 205 209695633 - VSAL_I2196 - hypothetical protein 2000 42.22 0 2360856..2361980 - 374 209695634 trmU VSAL_I2197 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 2001 41.46 0 2362097..2363635 - 512 209695635 norR VSAL_I2198 - anaerobic nitric oxide reductase transcription regulator NorR 2002 40.00 0 2363823..2365322 + 499 209695636 norV VSAL_I2199 - anaerobic nitric oxide reductase flavorubredoxin 2003 40.31 0 2365334..2366479 + 381 209695637 norW VSAL_I2200 - nitric oxide reductase flrd-nad(+) reductase 2004 41.86 0 2366492..2367265 + 257 209695638 fpr VSAL_I2201 - ferredoxin--NADP reductase 2005 43.15 +1 2367304..2367639 + 111 209695639 - VSAL_I2202 - hypothetical protein 2006 37.36 0 2367699..2367971 + 90 209695640 - VSAL_I2203 - hypothetical protein 2007 41.86 0 2368327..2368959 - 210 209695641 rluE VSAL_I2204 - ribosomal large subunit pseudouridine synthase E 2008 42.62 +1 2369130..2371358 + 742 209695642 icd VSAL_I2205 - isocitrate dehydrogenase [NADP] 2009 37.22 0 2371466..2372983 - 505 209695643 - VSAL_I2206 - putative sporulation protein 2010 40.11 0 2372995..2374263 - 422 209695644 - VSAL_I2207 - hypothetical protein 2011 39.07 0 2374331..2376265 - 644 209695645 prkA VSAL_I2208 - putative PrkA serine protein kinase 2012 44.17 +1 2376454..2377311 - 285 209695646 folD VSAL_I2209 - FolD bifunctional protein (includes: methylenetetrahydrofolate dehydrogenase; methenyltetrahydrofolate cyclohydrolase) 2013 39.78 0 2377762..2379219 + 485 209695647 - VSAL_I2210 - hypothetical protein 2014 33.15 -2 2379264..2379809 - 181 209695648 - VSAL_I2211 - putative lipoprotein 2015 41.89 0 2379927..2380148 - 73 209695649 cspD VSAL_I2212 - cold shock-like protein CspD 2016 36.76 0 2380544..2380864 + 106 209695650 clpS VSAL_I2213 - ATP-dependent Clp protease adaptor protein ClpS 2017 39.24 0 2380907..2383159 + 750 209695651 clpA VSAL_I2214 - ATP-dependent Clp protease ATP-binding subunit ClpA 2018 40.18 0 2383273..2383491 - 72 209695652 infA VSAL_I2215 - translation initiation factor IF-1 2019 37.09 0 2383581..2384273 - 230 209695653 - VSAL_I2216 - putative arginine-tRNA-protein transferase 2020 39.38 0 2384277..2384987 - 236 209695654 aat VSAL_I2217 - leucyl/phenylalanyl-tRNA-protein transferase 2021 39.41 0 2385186..2386469 + 427 209695655 aroA VSAL_I2218 - 3-phosphoshikimate 1-carboxyvinyltransferase 2022 43.41 +1 2386625..2387299 + 224 209695656 cmk VSAL_I2219 - cytidylate kinase 2023 43.91 +1 2387396..2389069 + 557 209695657 rpsA VSAL_I2220 - 30S ribosomal protein S1 2024 41.49 0 2389129..2389410 + 93 209695658 ihfB VSAL_I2222 - integration host factor beta-subunit 2025 35.09 -1 2389599..2389883 + 94 209695659 yciS VSAL_I2223 - inner membrane protein 2026 38.29 0 2389891..2391060 + 389 209695660 - VSAL_I2224 - hypothetical protein 2027 40.85 0 2391116..2391820 + 234 209695661 pyrF VSAL_I2225 - orotidine 5'-phosphate decarboxylase 2028 40.08 0 2391897..2393957 - 686 209695662 metG VSAL_I2226 - methionyl-tRNA synthetase 2029 39.70 0 2394090..2395157 + 355 209695663 - VSAL_I2227 - hypothetical protein 2030 38.43 0 2395269..2395916 + 215 209695664 udk VSAL_I2228 - uridine kinase (uridine monophosphokinase) (cytidin monophosphokinase) 2031 35.23 -1 2396081..2398240 + 719 209695665 - VSAL_I2229 - putative outer membrane assembly protein 2032 39.64 0 2398309..2398911 - 200 209695666 btuR VSAL_I2230 - cob(I)yrinic acid a,c-diamide adenosyltransferase (cob(I)alamin adenosyltransferase) (corrinoid adenosyltransferase) 2033 33.48 -1 2399172..2400494 + 440 209695667 - VSAL_I2231 - putative metal dependent phosphohydrolase 2034 40.50 0 2400552..2402099 - 515 209695668 - VSAL_I2232 - putative sulfate transporter 2035 42.36 0 2402274..2405321 - 1015 209695669 rne VSAL_I2233 - ribonuclease E 2036 38.29 0 2405765..2406712 + 315 209695670 rluC VSAL_I2234 - ribosomal large subunit pseudouridine synthase C (rRNA uridine isomerase C) (rRNA pseudouridylate synthase C) 2037 36.25 -1 2406791..2407372 - 193 209695671 - VSAL_I2235 - Maf-like protein 2038 36.97 0 2407506..2408027 + 173 209695672 - VSAL_I2236 - hypothetical protein 2039 45.61 +1 2408044..2408214 + 56 209695673 rpmF VSAL_I2237 - 50S ribosomal protein L32 2040 41.81 0 2408225..2409250 + 341 209695674 plsX VSAL_I2238 - fatty acid/phospholipid synthesis protein PlsX 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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