IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1939	 39.46	0	2281368..2282363	+	331	209695573	torT	VSAL_I2132	-	periplasmic solute binding receptor protein
1940	 40.79	0	2282428..2282883	+	151	209695574	mgsA	VSAL_I2133	-	methylglyoxal synthase
1941	 39.58	0	2282975..2285038	-	687	209695575	-	VSAL_I2134	-	helicase IV
1942	 40.54	0	2285204..2287408	+	734	209695576	-	VSAL_I2135	-	inner membrane protein
1943	 38.31	0	2287475..2288620	-	381	209695577	nspC	VSAL_I2136	-	carboxynorspermidine decarboxylase
1944	 42.33	0	2288695..2289939	-	414	209695578	-	VSAL_I2137	-	saccharopine dehydrogenase
1945	 39.98	0	2289942..2292845	-	967	209695579	-	VSAL_I2138	-	putative diaminobutyrate--2-oxoglutarate aminotransferase
1946	 39.28	0	2294246..2294800	-	184	209695580	pgsA	VSAL_I2139	-	cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferas (phosphatidylglycerophosphate synthase)
1947	 38.86	0	2294845..2296671	-	608	209695581	uvrC	VSAL_I2140	-	UvrABC system protein C (excinuclease ABC subunit C)
1948	 40.31	0	2296671..2297315	-	214	209695582	varA	VSAL_I2141	-	response regulator VarA
1949	 37.68	0	2297501..2299870	-	789	209695583	polB	VSAL_I2142	-	DNA polymerase II
1950	 35.14	-1	2299874..2300650	-	258	209695584	-	VSAL_I2143	-	hypothetical protein
1951	 38.94	0	2300762..2302348	-	528	209695585	-	VSAL_I2144	-	putative sodium/proton antiporter
1952	 42.51	0	2302858..2303271	+	137	209695586	-	VSAL_I2145	-	DNA binding protein, global metabolism regulator
1953	 39.71	0	2303350..2304102	-	250	209695587	-	VSAL_I2146	-	putative MltA-interacting protein MipA
1954	 33.69	-1	2304376..2305218	-	280	209695588	fadR	VSAL_I2147	-	fatty acid metabolism regulator protein
1955	 39.35	0	2305666..2307261	+	531	209695589	-	VSAL_I2148	-	sodium/proton antiporter
1956	 40.12	0	2307336..2307851	+	171	209695590	dsbB	VSAL_I2149	-	disulfide bond formation protein B (disulfide oxidoreductase)
1957	 40.98	0	2307941..2308555	-	204	209695591	-	VSAL_I2150	-	hypothetical protein
1958	 38.50	0	2308657..2309217	+	186	209695592	-	VSAL_I2151	-	membrane protein
1959	 39.66	0	2309269..2310216	+	315	209695593	dusC	VSAL_I2152	-	tRNA-dihydrouridine synthase C
1960	 34.22	-1	2310236..2311708	-	490	209695594	-	VSAL_I2153	-	membrane associated GGDEF protein
1961	 37.56	0	2311829..2312656	-	275	209695595	-	VSAL_I2154	-	hypothetical protein
1962	 41.56	0	2312740..2314683	-	647	209695596	topB	VSAL_I2155	-	DNA topoisomerase III
1963	 41.52	0	2314770..2316773	-	667	209695597	fadH	VSAL_I2156	-	2,4-dienoyl-CoA reductase [NADPH]
1964	 39.81	0	2317002..2318855	+	617	209695598	sppA	VSAL_I2157	-	protease IV (endopeptidase IV)
1965	 41.12	0	2318948..2319961	+	337	209695599	ansA	VSAL_I2158	-	L-asparaginase I
1966	 42.03	0	2320044..2321159	-	371	209695600	-	VSAL_I2159	-	aspartate-semialdehyde dehydrogenase
1967	 37.78	0	2323253..2323567	+	104	209695601	-	VSAL_I2161	-	transposase
1968	 35.92	-1	2323564..2323911	+	115	209695602	-	VSAL_I2162	-	transposase
1969	 39.65	0	2323983..2325470	+	495	209695603	-	VSAL_I2163	-	transposase
1970	 39.28	0	2328370..2328840	+	156	209695604	-	VSAL_I2165	-	phosphohistidine phosphatase SixA
1971	 41.76	0	2328885..2329418	-	177	209695605	-	VSAL_I2166	-	hypothetical protein
1972	 40.32	0	2329458..2330402	+	314	209695606	-	VSAL_I2167	-	putative methyltransferase
1973	 42.82	+1	2330804..2331889	+	361	209695607	aroC	VSAL_I2168	-	chorismate synthase (5-enolpyruvylshikimate-3-phosphat phospholyase)
1974	 41.12	0	2332077..2332718	-	213	209695608	-	VSAL_I2169	-	inner membrane protein
1975	 40.24	0	2332851..2333357	-	168	209695609	-	VSAL_I2170	-	putative MgtC/SapB transporter
1976	 38.61	0	2333546..2334076	+	176	209695610	-	VSAL_I2171	-	hypothetical protein
1977	 36.43	0	2334084..2334341	+	85	209695611	-	VSAL_I2172	-	hypothetical protein
1978	 37.21	0	2334448..2335581	+	377	209695612	-	VSAL_I2173	-	hypothetical protein, GGDEF domain
1979	 37.79	0	2335631..2336056	-	141	209695613	-	VSAL_I2174	-	hypothetical protein
1980	 39.17	0	2336134..2337075	+	313	209695614	-	VSAL_I2175	-	lipid A biosynthesis acyltransferase
1981	 43.40	+1	2337528..2338928	+	466	209695615	clcA	VSAL_I2176	-	H(+)/Cl(-) exchange transporter
1982	 39.72	0	2339267..2340754	-	495	209695616	-	VSAL_I2178	-	transposase
1983	 36.21	-1	2340826..2341173	-	115	209695617	-	VSAL_I2179	-	transposase
1984	 37.78	0	2341170..2341484	-	104	209695618	-	VSAL_I2180	-	transposase
1985	 38.52	0	2342095..2342904	-	269	209695619	rrmA	VSAL_I2181	-	ribosomal RNA large subunit methyltransferase A
1986	 43.06	+1	2343403..2344461	+	352	209695620	-	VSAL_I2182	-	outer membrane protein, porin
1987	 38.92	0	2344658..2345158	-	166	209695621	-	VSAL_I2183	-	hypothetical protein
1988	 42.88	+1	2345262..2346926	-	554	209695622	fhs	VSAL_I2184	-	formate--tetrahydrofolate ligase (formyltetrahydrofolate synthetase)
1989	 41.63	0	2348783..2349457	+	224	209695623	-	VSAL_I2186	-	HTH-type transcriptional regulator, two-component response regulator
1990	 38.64	0	2349468..2349938	+	156	209695624	-	VSAL_I2187	-	hypothetical protein
1991	 40.70	0	2349981..2350862	+	293	209695625	-	VSAL_I2188	-	putative phospholipase
1992	 40.27	0	2350959..2352155	-	398	209695626	rhlE	VSAL_I2189	-	putative ATP-dependent RNA helicase
1993	 42.96	+1	2352426..2353952	-	508	209695627	-	VSAL_I2190	-	integral membrane protein
1994	 39.72	0	2353969..2354469	-	166	209695628	-	VSAL_I2191	-	membrane protein
1995	 45.19	+1	2354605..2355591	-	328	209695629	-	VSAL_I2192	-	hypothetical protein
1996	 39.06	0	2355915..2358008	-	697	209695630	-	VSAL_I2193	-	methyl-accepting chemotaxis protein
1997	 36.83	0	2358242..2358670	+	142	209695631	-	VSAL_I2194	-	putative lipoprotein
1998	 42.60	+1	2358786..2360156	-	456	209695632	purB	VSAL_I2195	-	adenylosuccinate lyase (adenylosuccinase)
1999	 42.23	0	2360227..2360844	-	205	209695633	-	VSAL_I2196	-	hypothetical protein
2000	 42.22	0	2360856..2361980	-	374	209695634	trmU	VSAL_I2197	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2001	 41.46	0	2362097..2363635	-	512	209695635	norR	VSAL_I2198	-	anaerobic nitric oxide reductase transcription regulator NorR
2002	 40.00	0	2363823..2365322	+	499	209695636	norV	VSAL_I2199	-	anaerobic nitric oxide reductase flavorubredoxin
2003	 40.31	0	2365334..2366479	+	381	209695637	norW	VSAL_I2200	-	nitric oxide reductase flrd-nad(+) reductase
2004	 41.86	0	2366492..2367265	+	257	209695638	fpr	VSAL_I2201	-	ferredoxin--NADP reductase
2005	 43.15	+1	2367304..2367639	+	111	209695639	-	VSAL_I2202	-	hypothetical protein
2006	 37.36	0	2367699..2367971	+	90	209695640	-	VSAL_I2203	-	hypothetical protein
2007	 41.86	0	2368327..2368959	-	210	209695641	rluE	VSAL_I2204	-	ribosomal large subunit pseudouridine synthase E
2008	 42.62	+1	2369130..2371358	+	742	209695642	icd	VSAL_I2205	-	isocitrate dehydrogenase [NADP]
2009	 37.22	0	2371466..2372983	-	505	209695643	-	VSAL_I2206	-	putative sporulation protein
2010	 40.11	0	2372995..2374263	-	422	209695644	-	VSAL_I2207	-	hypothetical protein
2011	 39.07	0	2374331..2376265	-	644	209695645	prkA	VSAL_I2208	-	putative PrkA serine protein kinase
2012	 44.17	+1	2376454..2377311	-	285	209695646	folD	VSAL_I2209	-	FolD bifunctional protein (includes: methylenetetrahydrofolate dehydrogenase; methenyltetrahydrofolate cyclohydrolase)
2013	 39.78	0	2377762..2379219	+	485	209695647	-	VSAL_I2210	-	hypothetical protein
2014	 33.15	-2	2379264..2379809	-	181	209695648	-	VSAL_I2211	-	putative lipoprotein
2015	 41.89	0	2379927..2380148	-	73	209695649	cspD	VSAL_I2212	-	cold shock-like protein CspD
2016	 36.76	0	2380544..2380864	+	106	209695650	clpS	VSAL_I2213	-	ATP-dependent Clp protease adaptor protein ClpS
2017	 39.24	0	2380907..2383159	+	750	209695651	clpA	VSAL_I2214	-	ATP-dependent Clp protease ATP-binding subunit ClpA
2018	 40.18	0	2383273..2383491	-	72	209695652	infA	VSAL_I2215	-	translation initiation factor IF-1
2019	 37.09	0	2383581..2384273	-	230	209695653	-	VSAL_I2216	-	putative arginine-tRNA-protein transferase
2020	 39.38	0	2384277..2384987	-	236	209695654	aat	VSAL_I2217	-	leucyl/phenylalanyl-tRNA-protein transferase
2021	 39.41	0	2385186..2386469	+	427	209695655	aroA	VSAL_I2218	-	3-phosphoshikimate 1-carboxyvinyltransferase
2022	 43.41	+1	2386625..2387299	+	224	209695656	cmk	VSAL_I2219	-	cytidylate kinase
2023	 43.91	+1	2387396..2389069	+	557	209695657	rpsA	VSAL_I2220	-	30S ribosomal protein S1
2024	 41.49	0	2389129..2389410	+	93	209695658	ihfB	VSAL_I2222	-	integration host factor beta-subunit
2025	 35.09	-1	2389599..2389883	+	94	209695659	yciS	VSAL_I2223	-	inner membrane protein
2026	 38.29	0	2389891..2391060	+	389	209695660	-	VSAL_I2224	-	hypothetical protein
2027	 40.85	0	2391116..2391820	+	234	209695661	pyrF	VSAL_I2225	-	orotidine 5'-phosphate decarboxylase
2028	 40.08	0	2391897..2393957	-	686	209695662	metG	VSAL_I2226	-	methionyl-tRNA synthetase
2029	 39.70	0	2394090..2395157	+	355	209695663	-	VSAL_I2227	-	hypothetical protein
2030	 38.43	0	2395269..2395916	+	215	209695664	udk	VSAL_I2228	-	uridine kinase (uridine monophosphokinase) (cytidin monophosphokinase)
2031	 35.23	-1	2396081..2398240	+	719	209695665	-	VSAL_I2229	-	putative outer membrane assembly protein
2032	 39.64	0	2398309..2398911	-	200	209695666	btuR	VSAL_I2230	-	cob(I)yrinic acid a,c-diamide adenosyltransferase (cob(I)alamin adenosyltransferase) (corrinoid adenosyltransferase)
2033	 33.48	-1	2399172..2400494	+	440	209695667	-	VSAL_I2231	-	putative metal dependent phosphohydrolase
2034	 40.50	0	2400552..2402099	-	515	209695668	-	VSAL_I2232	-	putative sulfate transporter
2035	 42.36	0	2402274..2405321	-	1015	209695669	rne	VSAL_I2233	-	ribonuclease E
2036	 38.29	0	2405765..2406712	+	315	209695670	rluC	VSAL_I2234	-	ribosomal large subunit pseudouridine synthase C (rRNA uridine isomerase C) (rRNA pseudouridylate synthase C)
2037	 36.25	-1	2406791..2407372	-	193	209695671	-	VSAL_I2235	-	Maf-like protein
2038	 36.97	0	2407506..2408027	+	173	209695672	-	VSAL_I2236	-	hypothetical protein
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.