IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1898	 36.21	-1	2238694..2239041	-	115	209695532	-	VSAL_I2087	-	transposase
1899	 37.78	0	2239038..2239352	-	104	209695533	-	VSAL_I2088	-	transposase
1900	 44.35	+1	2240661..2241386	-	241	209695534	fabG	VSAL_I2090	-	3-oxoacyl-[acyl-carrier-protein] reductase
1901	 40.69	0	2241398..2241859	-	153	209695535	-	VSAL_I2091	-	beta-hydroxydecanoyl-ACP dehydrase
1902	 42.04	0	2241856..2243061	-	401	209695536	-	VSAL_I2092	-	beta-ketoacyl-[ACP] synthase
1903	 39.21	0	2243054..2243683	-	209	209695537	-	VSAL_I2093	-	putative lipoprotein
1904	 40.61	0	2243694..2246030	-	778	209695538	-	VSAL_I2094	-	membrane protein
1905	 36.39	0	2246035..2246655	-	206	209695539	-	VSAL_I2095	-	putative outer membrane protein
1906	 40.31	0	2246648..2247106	-	152	209695540	-	VSAL_I2096	-	putative thioesterase
1907	 42.32	0	2247106..2248641	-	511	209695541	-	VSAL_I2097	-	putative phenylalanine and histidine ammonia-lyase
1908	 40.43	0	2248631..2250322	-	563	209695542	-	VSAL_I2098	-	putative glycosyl transferase
1909	 38.67	0	2250325..2250699	-	124	209695543	-	VSAL_I2099	-	hypothetical protein
1910	 40.17	0	2250711..2252084	-	457	209695544	-	VSAL_I2100	-	hypothetical protein
1911	 40.46	0	2252081..2252641	-	186	209695545	-	VSAL_I2101	-	membrane protein
1912	 37.70	0	2252641..2252892	-	83	209695546	-	VSAL_I2102	-	putative acyl carrier protein
1913	 34.88	-1	2252901..2253158	-	85	209695547	-	VSAL_I2103	-	putative acyl carrier protein
1914	 37.72	0	2253166..2253963	-	265	209695548	-	VSAL_I2104	-	putative acyltransferase
1915	 39.75	0	2253965..2254696	-	243	209695549	-	VSAL_I2105	-	hypothetical protein
1916	 34.72	-1	2254826..2255401	+	191	209695550	-	VSAL_I2106	-	putative lipoprotein
1917	 38.42	0	2255434..2256573	+	379	209695551	-	VSAL_I2107	-	putative O-methyltransferase
1918	 40.02	0	2256654..2257895	+	413	209695552	-	VSAL_I2108	-	FAD dependent oxidoreductase
1919	 38.02	0	2257981..2258577	-	198	209695553	-	VSAL_I2109	-	hypothetical protein
1920	 42.85	+1	2258762..2260495	+	577	209695554	argS	VSAL_I2110	-	arginyl-tRNA synthetase
1921	 39.11	0	2260574..2261023	-	149	209695555	-	VSAL_I2111	-	membrane protein
1922	 44.19	+1	2261339..2262535	+	398	209695556	ackA	VSAL_I2112	-	acetate kinase
1923	 44.66	+1	2262635..2264806	+	723	209695557	pta	VSAL_I2113	-	phosphate acetyltransferase
1924	 39.65	0	2264949..2266436	-	495	209695558	-	VSAL_I2114	-	transposase
1925	 36.21	-1	2266508..2266855	-	115	209695559	-	VSAL_I2115	-	transposase
1926	 37.78	0	2266852..2267166	-	104	209695560	-	VSAL_I2116	-	transposase
1927	 41.48	0	2269187..2270008	+	273	209695561	-	VSAL_I2118	-	phosphate ABC transporter, extracellular solute-binding protein
1928	 43.69	+1	2270085..2271011	+	308	209695562	pstC	VSAL_I2119	-	phosphate ABC transporter, inner membrane component
1929	 38.83	0	2271016..2271870	+	284	209695563	pstA	VSAL_I2120	-	phosphate ABC transporter, permease protein
1930	 38.53	0	2271945..2272694	+	249	209695564	pstB	VSAL_I2121	-	phosphate import ABC transporter, ATP-binding protein
1931	 40.17	0	2273538..2273888	-	116	209695565	-	VSAL_I2124	-	hypothetical protein
1932	 42.42	0	2274021..2274284	-	87	209695566	-	VSAL_I2125	-	hypothetical protein
1933	 44.53	+1	2274292..2274684	-	130	209695567	-	VSAL_I2126	-	hypothetical protein
1934	 44.25	+1	2274875..2275048	+	57	209695568	-	VSAL_I2127	-	hypothetical protein
1935	 37.56	0	2275254..2275844	+	196	209695569	-	VSAL_I2128	-	hypothetical protein
1936	 34.77	-1	2275921..2276547	+	208	209695570	-	VSAL_I2129	-	hypothetical protein
1937	 37.84	0	2276649..2278289	-	546	209695571	-	VSAL_I2130	-	methyl-accepting chemotaxis protein
1938	 37.68	0	2278417..2281293	-	958	209695572	-	VSAL_I2131	-	response regulator, histidine kinase
1939	 39.46	0	2281368..2282363	+	331	209695573	torT	VSAL_I2132	-	periplasmic solute binding receptor protein
1940	 40.79	0	2282428..2282883	+	151	209695574	mgsA	VSAL_I2133	-	methylglyoxal synthase
1941	 39.58	0	2282975..2285038	-	687	209695575	-	VSAL_I2134	-	helicase IV
1942	 40.54	0	2285204..2287408	+	734	209695576	-	VSAL_I2135	-	inner membrane protein
1943	 38.31	0	2287475..2288620	-	381	209695577	nspC	VSAL_I2136	-	carboxynorspermidine decarboxylase
1944	 42.33	0	2288695..2289939	-	414	209695578	-	VSAL_I2137	-	saccharopine dehydrogenase
1945	 39.98	0	2289942..2292845	-	967	209695579	-	VSAL_I2138	-	putative diaminobutyrate--2-oxoglutarate aminotransferase
1946	 39.28	0	2294246..2294800	-	184	209695580	pgsA	VSAL_I2139	-	cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferas (phosphatidylglycerophosphate synthase)
1947	 38.86	0	2294845..2296671	-	608	209695581	uvrC	VSAL_I2140	-	UvrABC system protein C (excinuclease ABC subunit C)
1948	 40.31	0	2296671..2297315	-	214	209695582	varA	VSAL_I2141	-	response regulator VarA
1949	 37.68	0	2297501..2299870	-	789	209695583	polB	VSAL_I2142	-	DNA polymerase II
1950	 35.14	-1	2299874..2300650	-	258	209695584	-	VSAL_I2143	-	hypothetical protein
1951	 38.94	0	2300762..2302348	-	528	209695585	-	VSAL_I2144	-	putative sodium/proton antiporter
1952	 42.51	0	2302858..2303271	+	137	209695586	-	VSAL_I2145	-	DNA binding protein, global metabolism regulator
1953	 39.71	0	2303350..2304102	-	250	209695587	-	VSAL_I2146	-	putative MltA-interacting protein MipA
1954	 33.69	-1	2304376..2305218	-	280	209695588	fadR	VSAL_I2147	-	fatty acid metabolism regulator protein
1955	 39.35	0	2305666..2307261	+	531	209695589	-	VSAL_I2148	-	sodium/proton antiporter
1956	 40.12	0	2307336..2307851	+	171	209695590	dsbB	VSAL_I2149	-	disulfide bond formation protein B (disulfide oxidoreductase)
1957	 40.98	0	2307941..2308555	-	204	209695591	-	VSAL_I2150	-	hypothetical protein
1958	 38.50	0	2308657..2309217	+	186	209695592	-	VSAL_I2151	-	membrane protein
1959	 39.66	0	2309269..2310216	+	315	209695593	dusC	VSAL_I2152	-	tRNA-dihydrouridine synthase C
1960	 34.22	-1	2310236..2311708	-	490	209695594	-	VSAL_I2153	-	membrane associated GGDEF protein
1961	 37.56	0	2311829..2312656	-	275	209695595	-	VSAL_I2154	-	hypothetical protein
1962	 41.56	0	2312740..2314683	-	647	209695596	topB	VSAL_I2155	-	DNA topoisomerase III
1963	 41.52	0	2314770..2316773	-	667	209695597	fadH	VSAL_I2156	-	2,4-dienoyl-CoA reductase [NADPH]
1964	 39.81	0	2317002..2318855	+	617	209695598	sppA	VSAL_I2157	-	protease IV (endopeptidase IV)
1965	 41.12	0	2318948..2319961	+	337	209695599	ansA	VSAL_I2158	-	L-asparaginase I
1966	 42.03	0	2320044..2321159	-	371	209695600	-	VSAL_I2159	-	aspartate-semialdehyde dehydrogenase
1967	 37.78	0	2323253..2323567	+	104	209695601	-	VSAL_I2161	-	transposase
1968	 35.92	-1	2323564..2323911	+	115	209695602	-	VSAL_I2162	-	transposase
1969	 39.65	0	2323983..2325470	+	495	209695603	-	VSAL_I2163	-	transposase
1970	 39.28	0	2328370..2328840	+	156	209695604	-	VSAL_I2165	-	phosphohistidine phosphatase SixA
1971	 41.76	0	2328885..2329418	-	177	209695605	-	VSAL_I2166	-	hypothetical protein
1972	 40.32	0	2329458..2330402	+	314	209695606	-	VSAL_I2167	-	putative methyltransferase
1973	 42.82	+1	2330804..2331889	+	361	209695607	aroC	VSAL_I2168	-	chorismate synthase (5-enolpyruvylshikimate-3-phosphat phospholyase)
1974	 41.12	0	2332077..2332718	-	213	209695608	-	VSAL_I2169	-	inner membrane protein
1975	 40.24	0	2332851..2333357	-	168	209695609	-	VSAL_I2170	-	putative MgtC/SapB transporter
1976	 38.61	0	2333546..2334076	+	176	209695610	-	VSAL_I2171	-	hypothetical protein
1977	 36.43	0	2334084..2334341	+	85	209695611	-	VSAL_I2172	-	hypothetical protein
1978	 37.21	0	2334448..2335581	+	377	209695612	-	VSAL_I2173	-	hypothetical protein, GGDEF domain
1979	 37.79	0	2335631..2336056	-	141	209695613	-	VSAL_I2174	-	hypothetical protein
1980	 39.17	0	2336134..2337075	+	313	209695614	-	VSAL_I2175	-	lipid A biosynthesis acyltransferase
1981	 43.40	+1	2337528..2338928	+	466	209695615	clcA	VSAL_I2176	-	H(+)/Cl(-) exchange transporter
1982	 39.72	0	2339267..2340754	-	495	209695616	-	VSAL_I2178	-	transposase
1983	 36.21	-1	2340826..2341173	-	115	209695617	-	VSAL_I2179	-	transposase
1984	 37.78	0	2341170..2341484	-	104	209695618	-	VSAL_I2180	-	transposase
1985	 38.52	0	2342095..2342904	-	269	209695619	rrmA	VSAL_I2181	-	ribosomal RNA large subunit methyltransferase A
1986	 43.06	+1	2343403..2344461	+	352	209695620	-	VSAL_I2182	-	outer membrane protein, porin
1987	 38.92	0	2344658..2345158	-	166	209695621	-	VSAL_I2183	-	hypothetical protein
1988	 42.88	+1	2345262..2346926	-	554	209695622	fhs	VSAL_I2184	-	formate--tetrahydrofolate ligase (formyltetrahydrofolate synthetase)
1989	 41.63	0	2348783..2349457	+	224	209695623	-	VSAL_I2186	-	HTH-type transcriptional regulator, two-component response regulator
1990	 38.64	0	2349468..2349938	+	156	209695624	-	VSAL_I2187	-	hypothetical protein
1991	 40.70	0	2349981..2350862	+	293	209695625	-	VSAL_I2188	-	putative phospholipase
1992	 40.27	0	2350959..2352155	-	398	209695626	rhlE	VSAL_I2189	-	putative ATP-dependent RNA helicase
1993	 42.96	+1	2352426..2353952	-	508	209695627	-	VSAL_I2190	-	integral membrane protein
1994	 39.72	0	2353969..2354469	-	166	209695628	-	VSAL_I2191	-	membrane protein
1995	 45.19	+1	2354605..2355591	-	328	209695629	-	VSAL_I2192	-	hypothetical protein
1996	 39.06	0	2355915..2358008	-	697	209695630	-	VSAL_I2193	-	methyl-accepting chemotaxis protein
1997	 36.83	0	2358242..2358670	+	142	209695631	-	VSAL_I2194	-	putative lipoprotein
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.