version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1896 45.16 +1 2235954..2236232 + 92 209695530 rplY VSAL_I2084 - 50S ribosomal protein L25 1897 41.44 0 2236539..2236982 + 147 209695531 - VSAL_I2085 - heat shock protein 1898 36.21 -1 2238694..2239041 - 115 209695532 - VSAL_I2087 - transposase 1899 37.78 0 2239038..2239352 - 104 209695533 - VSAL_I2088 - transposase 1900 44.35 +1 2240661..2241386 - 241 209695534 fabG VSAL_I2090 - 3-oxoacyl-[acyl-carrier-protein] reductase 1901 40.69 0 2241398..2241859 - 153 209695535 - VSAL_I2091 - beta-hydroxydecanoyl-ACP dehydrase 1902 42.04 0 2241856..2243061 - 401 209695536 - VSAL_I2092 - beta-ketoacyl-[ACP] synthase 1903 39.21 0 2243054..2243683 - 209 209695537 - VSAL_I2093 - putative lipoprotein 1904 40.61 0 2243694..2246030 - 778 209695538 - VSAL_I2094 - membrane protein 1905 36.39 0 2246035..2246655 - 206 209695539 - VSAL_I2095 - putative outer membrane protein 1906 40.31 0 2246648..2247106 - 152 209695540 - VSAL_I2096 - putative thioesterase 1907 42.32 0 2247106..2248641 - 511 209695541 - VSAL_I2097 - putative phenylalanine and histidine ammonia-lyase 1908 40.43 0 2248631..2250322 - 563 209695542 - VSAL_I2098 - putative glycosyl transferase 1909 38.67 0 2250325..2250699 - 124 209695543 - VSAL_I2099 - hypothetical protein 1910 40.17 0 2250711..2252084 - 457 209695544 - VSAL_I2100 - hypothetical protein 1911 40.46 0 2252081..2252641 - 186 209695545 - VSAL_I2101 - membrane protein 1912 37.70 0 2252641..2252892 - 83 209695546 - VSAL_I2102 - putative acyl carrier protein 1913 34.88 -1 2252901..2253158 - 85 209695547 - VSAL_I2103 - putative acyl carrier protein 1914 37.72 0 2253166..2253963 - 265 209695548 - VSAL_I2104 - putative acyltransferase 1915 39.75 0 2253965..2254696 - 243 209695549 - VSAL_I2105 - hypothetical protein 1916 34.72 -1 2254826..2255401 + 191 209695550 - VSAL_I2106 - putative lipoprotein 1917 38.42 0 2255434..2256573 + 379 209695551 - VSAL_I2107 - putative O-methyltransferase 1918 40.02 0 2256654..2257895 + 413 209695552 - VSAL_I2108 - FAD dependent oxidoreductase 1919 38.02 0 2257981..2258577 - 198 209695553 - VSAL_I2109 - hypothetical protein 1920 42.85 +1 2258762..2260495 + 577 209695554 argS VSAL_I2110 - arginyl-tRNA synthetase 1921 39.11 0 2260574..2261023 - 149 209695555 - VSAL_I2111 - membrane protein 1922 44.19 +1 2261339..2262535 + 398 209695556 ackA VSAL_I2112 - acetate kinase 1923 44.66 +1 2262635..2264806 + 723 209695557 pta VSAL_I2113 - phosphate acetyltransferase 1924 39.65 0 2264949..2266436 - 495 209695558 - VSAL_I2114 - transposase 1925 36.21 -1 2266508..2266855 - 115 209695559 - VSAL_I2115 - transposase 1926 37.78 0 2266852..2267166 - 104 209695560 - VSAL_I2116 - transposase 1927 41.48 0 2269187..2270008 + 273 209695561 - VSAL_I2118 - phosphate ABC transporter, extracellular solute-binding protein 1928 43.69 +1 2270085..2271011 + 308 209695562 pstC VSAL_I2119 - phosphate ABC transporter, inner membrane component 1929 38.83 0 2271016..2271870 + 284 209695563 pstA VSAL_I2120 - phosphate ABC transporter, permease protein 1930 38.53 0 2271945..2272694 + 249 209695564 pstB VSAL_I2121 - phosphate import ABC transporter, ATP-binding protein 1931 40.17 0 2273538..2273888 - 116 209695565 - VSAL_I2124 - hypothetical protein 1932 42.42 0 2274021..2274284 - 87 209695566 - VSAL_I2125 - hypothetical protein 1933 44.53 +1 2274292..2274684 - 130 209695567 - VSAL_I2126 - hypothetical protein 1934 44.25 +1 2274875..2275048 + 57 209695568 - VSAL_I2127 - hypothetical protein 1935 37.56 0 2275254..2275844 + 196 209695569 - VSAL_I2128 - hypothetical protein 1936 34.77 -1 2275921..2276547 + 208 209695570 - VSAL_I2129 - hypothetical protein 1937 37.84 0 2276649..2278289 - 546 209695571 - VSAL_I2130 - methyl-accepting chemotaxis protein 1938 37.68 0 2278417..2281293 - 958 209695572 - VSAL_I2131 - response regulator, histidine kinase 1939 39.46 0 2281368..2282363 + 331 209695573 torT VSAL_I2132 - periplasmic solute binding receptor protein 1940 40.79 0 2282428..2282883 + 151 209695574 mgsA VSAL_I2133 - methylglyoxal synthase 1941 39.58 0 2282975..2285038 - 687 209695575 - VSAL_I2134 - helicase IV 1942 40.54 0 2285204..2287408 + 734 209695576 - VSAL_I2135 - inner membrane protein 1943 38.31 0 2287475..2288620 - 381 209695577 nspC VSAL_I2136 - carboxynorspermidine decarboxylase 1944 42.33 0 2288695..2289939 - 414 209695578 - VSAL_I2137 - saccharopine dehydrogenase 1945 39.98 0 2289942..2292845 - 967 209695579 - VSAL_I2138 - putative diaminobutyrate--2-oxoglutarate aminotransferase 1946 39.28 0 2294246..2294800 - 184 209695580 pgsA VSAL_I2139 - cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferas (phosphatidylglycerophosphate synthase) 1947 38.86 0 2294845..2296671 - 608 209695581 uvrC VSAL_I2140 - UvrABC system protein C (excinuclease ABC subunit C) 1948 40.31 0 2296671..2297315 - 214 209695582 varA VSAL_I2141 - response regulator VarA 1949 37.68 0 2297501..2299870 - 789 209695583 polB VSAL_I2142 - DNA polymerase II 1950 35.14 -1 2299874..2300650 - 258 209695584 - VSAL_I2143 - hypothetical protein 1951 38.94 0 2300762..2302348 - 528 209695585 - VSAL_I2144 - putative sodium/proton antiporter 1952 42.51 0 2302858..2303271 + 137 209695586 - VSAL_I2145 - DNA binding protein, global metabolism regulator 1953 39.71 0 2303350..2304102 - 250 209695587 - VSAL_I2146 - putative MltA-interacting protein MipA 1954 33.69 -1 2304376..2305218 - 280 209695588 fadR VSAL_I2147 - fatty acid metabolism regulator protein 1955 39.35 0 2305666..2307261 + 531 209695589 - VSAL_I2148 - sodium/proton antiporter 1956 40.12 0 2307336..2307851 + 171 209695590 dsbB VSAL_I2149 - disulfide bond formation protein B (disulfide oxidoreductase) 1957 40.98 0 2307941..2308555 - 204 209695591 - VSAL_I2150 - hypothetical protein 1958 38.50 0 2308657..2309217 + 186 209695592 - VSAL_I2151 - membrane protein 1959 39.66 0 2309269..2310216 + 315 209695593 dusC VSAL_I2152 - tRNA-dihydrouridine synthase C 1960 34.22 -1 2310236..2311708 - 490 209695594 - VSAL_I2153 - membrane associated GGDEF protein 1961 37.56 0 2311829..2312656 - 275 209695595 - VSAL_I2154 - hypothetical protein 1962 41.56 0 2312740..2314683 - 647 209695596 topB VSAL_I2155 - DNA topoisomerase III 1963 41.52 0 2314770..2316773 - 667 209695597 fadH VSAL_I2156 - 2,4-dienoyl-CoA reductase [NADPH] 1964 39.81 0 2317002..2318855 + 617 209695598 sppA VSAL_I2157 - protease IV (endopeptidase IV) 1965 41.12 0 2318948..2319961 + 337 209695599 ansA VSAL_I2158 - L-asparaginase I 1966 42.03 0 2320044..2321159 - 371 209695600 - VSAL_I2159 - aspartate-semialdehyde dehydrogenase 1967 37.78 0 2323253..2323567 + 104 209695601 - VSAL_I2161 - transposase 1968 35.92 -1 2323564..2323911 + 115 209695602 - VSAL_I2162 - transposase 1969 39.65 0 2323983..2325470 + 495 209695603 - VSAL_I2163 - transposase 1970 39.28 0 2328370..2328840 + 156 209695604 - VSAL_I2165 - phosphohistidine phosphatase SixA 1971 41.76 0 2328885..2329418 - 177 209695605 - VSAL_I2166 - hypothetical protein 1972 40.32 0 2329458..2330402 + 314 209695606 - VSAL_I2167 - putative methyltransferase 1973 42.82 +1 2330804..2331889 + 361 209695607 aroC VSAL_I2168 - chorismate synthase (5-enolpyruvylshikimate-3-phosphat phospholyase) 1974 41.12 0 2332077..2332718 - 213 209695608 - VSAL_I2169 - inner membrane protein 1975 40.24 0 2332851..2333357 - 168 209695609 - VSAL_I2170 - putative MgtC/SapB transporter 1976 38.61 0 2333546..2334076 + 176 209695610 - VSAL_I2171 - hypothetical protein 1977 36.43 0 2334084..2334341 + 85 209695611 - VSAL_I2172 - hypothetical protein 1978 37.21 0 2334448..2335581 + 377 209695612 - VSAL_I2173 - hypothetical protein, GGDEF domain 1979 37.79 0 2335631..2336056 - 141 209695613 - VSAL_I2174 - hypothetical protein 1980 39.17 0 2336134..2337075 + 313 209695614 - VSAL_I2175 - lipid A biosynthesis acyltransferase 1981 43.40 +1 2337528..2338928 + 466 209695615 clcA VSAL_I2176 - H(+)/Cl(-) exchange transporter 1982 39.72 0 2339267..2340754 - 495 209695616 - VSAL_I2178 - transposase 1983 36.21 -1 2340826..2341173 - 115 209695617 - VSAL_I2179 - transposase 1984 37.78 0 2341170..2341484 - 104 209695618 - VSAL_I2180 - transposase 1985 38.52 0 2342095..2342904 - 269 209695619 rrmA VSAL_I2181 - ribosomal RNA large subunit methyltransferase A 1986 43.06 +1 2343403..2344461 + 352 209695620 - VSAL_I2182 - outer membrane protein, porin 1987 38.92 0 2344658..2345158 - 166 209695621 - VSAL_I2183 - hypothetical protein 1988 42.88 +1 2345262..2346926 - 554 209695622 fhs VSAL_I2184 - formate--tetrahydrofolate ligase (formyltetrahydrofolate synthetase) 1989 41.63 0 2348783..2349457 + 224 209695623 - VSAL_I2186 - HTH-type transcriptional regulator, two-component response regulator 1990 38.64 0 2349468..2349938 + 156 209695624 - VSAL_I2187 - hypothetical protein 1991 40.70 0 2349981..2350862 + 293 209695625 - VSAL_I2188 - putative phospholipase 1992 40.27 0 2350959..2352155 - 398 209695626 rhlE VSAL_I2189 - putative ATP-dependent RNA helicase 1993 42.96 +1 2352426..2353952 - 508 209695627 - VSAL_I2190 - integral membrane protein 1994 39.72 0 2353969..2354469 - 166 209695628 - VSAL_I2191 - membrane protein 1995 45.19 +1 2354605..2355591 - 328 209695629 - VSAL_I2192 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0