IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1866	 39.67	0	2200109..2200771	-	220	209695500	-	VSAL_I2053	-	inner membrane protein
1867	 39.47	0	2201012..2201761	-	249	209695501	aapP	VSAL_I2054	-	general L-amino acid transport ATP-binding subunit
1868	 41.26	0	2201786..2202883	-	365	209695502	aapM	VSAL_I2055	-	general L-amino acid ABC transporter permease protein
1869	 40.55	0	2202886..2204007	-	373	209695503	aapQ	VSAL_I2056	-	general L-amino acid ABC transporter permease protein
1870	 42.47	0	2204096..2205124	-	342	209695504	aapJ	VSAL_I2057	-	general L-amino acid-binding periplasmic protein precursor
1871	 39.17	0	2205516..2206457	+	313	209695505	-	VSAL_I2058	-	virulence protein VirC
1872	 37.70	0	2206485..2207171	+	228	209695506	-	VSAL_I2059	-	transcription regulator, GntR family
1873	 38.55	0	2207303..2207992	-	229	209695507	-	VSAL_I2060	-	hypothetical protein
1874	 37.36	0	2208223..2208918	-	231	209695508	-	VSAL_I2061	-	hypothetical protein
1875	 40.59	0	2209199..2212231	+	1010	209695509	-	VSAL_I2062	-	FAD linked oxidase
1876	 34.34	-1	2212400..2213992	+	530	209695510	-	VSAL_I2063	-	hypothetical protein
1877	 38.10	0	2214121..2214540	+	139	209695511	-	VSAL_I2064	-	hypothetical protein
1878	 44.87	+1	2214988..2215143	+	51	209695512	-	VSAL_I2065	-	hypothetical protein
1879	 41.15	0	2215436..2216650	+	404	209695513	-	VSAL_I2066	-	group II intron reverse transcriptase/maturase
1880	 42.51	0	2216849..2219170	+	773	209695514	zntA	VSAL_I2067	-	lead, cadmium, zinc and mercury-transporting ATPase
1881	 35.08	-1	2219231..2221753	-	840	209695515	-	VSAL_I2068	-	membrane protein
1882	 35.94	-1	2222500..2223381	-	293	209695516	-	VSAL_I2070	-	transposase
1883	 45.13	+1	2223705..2224043	+	112	209695517	-	VSAL_I2071	-	hypothetical protein
1884	 38.24	0	2224188..2224493	-	101	209695518	-	VSAL_I2072	-	hypothetical protein
1885	 35.15	-1	2224789..2225283	-	164	209695519	-	VSAL_I2073	-	hypothetical protein
1886	 42.16	0	2225514..2226170	+	218	209695520	-	VSAL_I2074	-	chloramphenicol acetyltransferase
1887	 42.88	+1	2226488..2227576	+	362	209695521	-	VSAL_I2075	-	methyl-accepting chemotaxis protein
1888	 36.10	-1	2227871..2228557	-	228	209695522	-	VSAL_I2076	-	hypothetical protein
1889	 27.16	-2	2228617..2228859	-	80	209695523	-	VSAL_I2077a	-	hypothetical protein
1890	 36.37	0	2228872..2229957	-	361	209695524	serC	VSAL_I2078	-	phosphoserine aminotransferase
1891	 36.71	0	2229962..2230702	-	246	209695525	-	VSAL_I2079	-	glutamine amidotransferase
1892	 36.68	0	2230843..2231649	+	268	209695526	-	VSAL_I2080	-	HTH-type transcriptional regulator, AraC-family
1893	 41.81	0	2231708..2233240	-	510	209695527	-	VSAL_I2081	-	putative phospholipase D
1894	 41.57	0	2233560..2235284	+	574	209695528	-	VSAL_I2082	-	putative helicase (DEAD/DEAH box helicase)
1895	 41.55	0	2235303..2235740	-	145	209695529	-	VSAL_I2083	-	hypothetical protein
1896	 45.16	+1	2235954..2236232	+	92	209695530	rplY	VSAL_I2084	-	50S ribosomal protein L25
1897	 41.44	0	2236539..2236982	+	147	209695531	-	VSAL_I2085	-	heat shock protein
1898	 36.21	-1	2238694..2239041	-	115	209695532	-	VSAL_I2087	-	transposase
1899	 37.78	0	2239038..2239352	-	104	209695533	-	VSAL_I2088	-	transposase
1900	 44.35	+1	2240661..2241386	-	241	209695534	fabG	VSAL_I2090	-	3-oxoacyl-[acyl-carrier-protein] reductase
1901	 40.69	0	2241398..2241859	-	153	209695535	-	VSAL_I2091	-	beta-hydroxydecanoyl-ACP dehydrase
1902	 42.04	0	2241856..2243061	-	401	209695536	-	VSAL_I2092	-	beta-ketoacyl-[ACP] synthase
1903	 39.21	0	2243054..2243683	-	209	209695537	-	VSAL_I2093	-	putative lipoprotein
1904	 40.61	0	2243694..2246030	-	778	209695538	-	VSAL_I2094	-	membrane protein
1905	 36.39	0	2246035..2246655	-	206	209695539	-	VSAL_I2095	-	putative outer membrane protein
1906	 40.31	0	2246648..2247106	-	152	209695540	-	VSAL_I2096	-	putative thioesterase
1907	 42.32	0	2247106..2248641	-	511	209695541	-	VSAL_I2097	-	putative phenylalanine and histidine ammonia-lyase
1908	 40.43	0	2248631..2250322	-	563	209695542	-	VSAL_I2098	-	putative glycosyl transferase
1909	 38.67	0	2250325..2250699	-	124	209695543	-	VSAL_I2099	-	hypothetical protein
1910	 40.17	0	2250711..2252084	-	457	209695544	-	VSAL_I2100	-	hypothetical protein
1911	 40.46	0	2252081..2252641	-	186	209695545	-	VSAL_I2101	-	membrane protein
1912	 37.70	0	2252641..2252892	-	83	209695546	-	VSAL_I2102	-	putative acyl carrier protein
1913	 34.88	-1	2252901..2253158	-	85	209695547	-	VSAL_I2103	-	putative acyl carrier protein
1914	 37.72	0	2253166..2253963	-	265	209695548	-	VSAL_I2104	-	putative acyltransferase
1915	 39.75	0	2253965..2254696	-	243	209695549	-	VSAL_I2105	-	hypothetical protein
1916	 34.72	-1	2254826..2255401	+	191	209695550	-	VSAL_I2106	-	putative lipoprotein
1917	 38.42	0	2255434..2256573	+	379	209695551	-	VSAL_I2107	-	putative O-methyltransferase
1918	 40.02	0	2256654..2257895	+	413	209695552	-	VSAL_I2108	-	FAD dependent oxidoreductase
1919	 38.02	0	2257981..2258577	-	198	209695553	-	VSAL_I2109	-	hypothetical protein
1920	 42.85	+1	2258762..2260495	+	577	209695554	argS	VSAL_I2110	-	arginyl-tRNA synthetase
1921	 39.11	0	2260574..2261023	-	149	209695555	-	VSAL_I2111	-	membrane protein
1922	 44.19	+1	2261339..2262535	+	398	209695556	ackA	VSAL_I2112	-	acetate kinase
1923	 44.66	+1	2262635..2264806	+	723	209695557	pta	VSAL_I2113	-	phosphate acetyltransferase
1924	 39.65	0	2264949..2266436	-	495	209695558	-	VSAL_I2114	-	transposase
1925	 36.21	-1	2266508..2266855	-	115	209695559	-	VSAL_I2115	-	transposase
1926	 37.78	0	2266852..2267166	-	104	209695560	-	VSAL_I2116	-	transposase
1927	 41.48	0	2269187..2270008	+	273	209695561	-	VSAL_I2118	-	phosphate ABC transporter, extracellular solute-binding protein
1928	 43.69	+1	2270085..2271011	+	308	209695562	pstC	VSAL_I2119	-	phosphate ABC transporter, inner membrane component
1929	 38.83	0	2271016..2271870	+	284	209695563	pstA	VSAL_I2120	-	phosphate ABC transporter, permease protein
1930	 38.53	0	2271945..2272694	+	249	209695564	pstB	VSAL_I2121	-	phosphate import ABC transporter, ATP-binding protein
1931	 40.17	0	2273538..2273888	-	116	209695565	-	VSAL_I2124	-	hypothetical protein
1932	 42.42	0	2274021..2274284	-	87	209695566	-	VSAL_I2125	-	hypothetical protein
1933	 44.53	+1	2274292..2274684	-	130	209695567	-	VSAL_I2126	-	hypothetical protein
1934	 44.25	+1	2274875..2275048	+	57	209695568	-	VSAL_I2127	-	hypothetical protein
1935	 37.56	0	2275254..2275844	+	196	209695569	-	VSAL_I2128	-	hypothetical protein
1936	 34.77	-1	2275921..2276547	+	208	209695570	-	VSAL_I2129	-	hypothetical protein
1937	 37.84	0	2276649..2278289	-	546	209695571	-	VSAL_I2130	-	methyl-accepting chemotaxis protein
1938	 37.68	0	2278417..2281293	-	958	209695572	-	VSAL_I2131	-	response regulator, histidine kinase
1939	 39.46	0	2281368..2282363	+	331	209695573	torT	VSAL_I2132	-	periplasmic solute binding receptor protein
1940	 40.79	0	2282428..2282883	+	151	209695574	mgsA	VSAL_I2133	-	methylglyoxal synthase
1941	 39.58	0	2282975..2285038	-	687	209695575	-	VSAL_I2134	-	helicase IV
1942	 40.54	0	2285204..2287408	+	734	209695576	-	VSAL_I2135	-	inner membrane protein
1943	 38.31	0	2287475..2288620	-	381	209695577	nspC	VSAL_I2136	-	carboxynorspermidine decarboxylase
1944	 42.33	0	2288695..2289939	-	414	209695578	-	VSAL_I2137	-	saccharopine dehydrogenase
1945	 39.98	0	2289942..2292845	-	967	209695579	-	VSAL_I2138	-	putative diaminobutyrate--2-oxoglutarate aminotransferase
1946	 39.28	0	2294246..2294800	-	184	209695580	pgsA	VSAL_I2139	-	cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferas (phosphatidylglycerophosphate synthase)
1947	 38.86	0	2294845..2296671	-	608	209695581	uvrC	VSAL_I2140	-	UvrABC system protein C (excinuclease ABC subunit C)
1948	 40.31	0	2296671..2297315	-	214	209695582	varA	VSAL_I2141	-	response regulator VarA
1949	 37.68	0	2297501..2299870	-	789	209695583	polB	VSAL_I2142	-	DNA polymerase II
1950	 35.14	-1	2299874..2300650	-	258	209695584	-	VSAL_I2143	-	hypothetical protein
1951	 38.94	0	2300762..2302348	-	528	209695585	-	VSAL_I2144	-	putative sodium/proton antiporter
1952	 42.51	0	2302858..2303271	+	137	209695586	-	VSAL_I2145	-	DNA binding protein, global metabolism regulator
1953	 39.71	0	2303350..2304102	-	250	209695587	-	VSAL_I2146	-	putative MltA-interacting protein MipA
1954	 33.69	-1	2304376..2305218	-	280	209695588	fadR	VSAL_I2147	-	fatty acid metabolism regulator protein
1955	 39.35	0	2305666..2307261	+	531	209695589	-	VSAL_I2148	-	sodium/proton antiporter
1956	 40.12	0	2307336..2307851	+	171	209695590	dsbB	VSAL_I2149	-	disulfide bond formation protein B (disulfide oxidoreductase)
1957	 40.98	0	2307941..2308555	-	204	209695591	-	VSAL_I2150	-	hypothetical protein
1958	 38.50	0	2308657..2309217	+	186	209695592	-	VSAL_I2151	-	membrane protein
1959	 39.66	0	2309269..2310216	+	315	209695593	dusC	VSAL_I2152	-	tRNA-dihydrouridine synthase C
1960	 34.22	-1	2310236..2311708	-	490	209695594	-	VSAL_I2153	-	membrane associated GGDEF protein
1961	 37.56	0	2311829..2312656	-	275	209695595	-	VSAL_I2154	-	hypothetical protein
1962	 41.56	0	2312740..2314683	-	647	209695596	topB	VSAL_I2155	-	DNA topoisomerase III
1963	 41.52	0	2314770..2316773	-	667	209695597	fadH	VSAL_I2156	-	2,4-dienoyl-CoA reductase [NADPH]
1964	 39.81	0	2317002..2318855	+	617	209695598	sppA	VSAL_I2157	-	protease IV (endopeptidase IV)
1965	 41.12	0	2318948..2319961	+	337	209695599	ansA	VSAL_I2158	-	L-asparaginase I
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.