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Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1862 36.96 0 2193662..2194351 - 229 209695496 - VSAL_I2048 - putative multiprotein complex assembly protein 1863 38.81 0 2194501..2195376 - 291 209695497 - VSAL_I2049 - mechanosensitive ion channel 1864 39.31 0 2195378..2197738 - 786 209695498 - VSAL_I2050 - membrane protein 1865 35.94 -1 2197997..2198878 - 293 209695499 - VSAL_I2051 - transposase 1866 39.67 0 2200109..2200771 - 220 209695500 - VSAL_I2053 - inner membrane protein 1867 39.47 0 2201012..2201761 - 249 209695501 aapP VSAL_I2054 - general L-amino acid transport ATP-binding subunit 1868 41.26 0 2201786..2202883 - 365 209695502 aapM VSAL_I2055 - general L-amino acid ABC transporter permease protein 1869 40.55 0 2202886..2204007 - 373 209695503 aapQ VSAL_I2056 - general L-amino acid ABC transporter permease protein 1870 42.47 0 2204096..2205124 - 342 209695504 aapJ VSAL_I2057 - general L-amino acid-binding periplasmic protein precursor 1871 39.17 0 2205516..2206457 + 313 209695505 - VSAL_I2058 - virulence protein VirC 1872 37.70 0 2206485..2207171 + 228 209695506 - VSAL_I2059 - transcription regulator, GntR family 1873 38.55 0 2207303..2207992 - 229 209695507 - VSAL_I2060 - hypothetical protein 1874 37.36 0 2208223..2208918 - 231 209695508 - VSAL_I2061 - hypothetical protein 1875 40.59 0 2209199..2212231 + 1010 209695509 - VSAL_I2062 - FAD linked oxidase 1876 34.34 -1 2212400..2213992 + 530 209695510 - VSAL_I2063 - hypothetical protein 1877 38.10 0 2214121..2214540 + 139 209695511 - VSAL_I2064 - hypothetical protein 1878 44.87 +1 2214988..2215143 + 51 209695512 - VSAL_I2065 - hypothetical protein 1879 41.15 0 2215436..2216650 + 404 209695513 - VSAL_I2066 - group II intron reverse transcriptase/maturase 1880 42.51 0 2216849..2219170 + 773 209695514 zntA VSAL_I2067 - lead, cadmium, zinc and mercury-transporting ATPase 1881 35.08 -1 2219231..2221753 - 840 209695515 - VSAL_I2068 - membrane protein 1882 35.94 -1 2222500..2223381 - 293 209695516 - VSAL_I2070 - transposase 1883 45.13 +1 2223705..2224043 + 112 209695517 - VSAL_I2071 - hypothetical protein 1884 38.24 0 2224188..2224493 - 101 209695518 - VSAL_I2072 - hypothetical protein 1885 35.15 -1 2224789..2225283 - 164 209695519 - VSAL_I2073 - hypothetical protein 1886 42.16 0 2225514..2226170 + 218 209695520 - VSAL_I2074 - chloramphenicol acetyltransferase 1887 42.88 +1 2226488..2227576 + 362 209695521 - VSAL_I2075 - methyl-accepting chemotaxis protein 1888 36.10 -1 2227871..2228557 - 228 209695522 - VSAL_I2076 - hypothetical protein 1889 27.16 -2 2228617..2228859 - 80 209695523 - VSAL_I2077a - hypothetical protein 1890 36.37 0 2228872..2229957 - 361 209695524 serC VSAL_I2078 - phosphoserine aminotransferase 1891 36.71 0 2229962..2230702 - 246 209695525 - VSAL_I2079 - glutamine amidotransferase 1892 36.68 0 2230843..2231649 + 268 209695526 - VSAL_I2080 - HTH-type transcriptional regulator, AraC-family 1893 41.81 0 2231708..2233240 - 510 209695527 - VSAL_I2081 - putative phospholipase D 1894 41.57 0 2233560..2235284 + 574 209695528 - VSAL_I2082 - putative helicase (DEAD/DEAH box helicase) 1895 41.55 0 2235303..2235740 - 145 209695529 - VSAL_I2083 - hypothetical protein 1896 45.16 +1 2235954..2236232 + 92 209695530 rplY VSAL_I2084 - 50S ribosomal protein L25 1897 41.44 0 2236539..2236982 + 147 209695531 - VSAL_I2085 - heat shock protein 1898 36.21 -1 2238694..2239041 - 115 209695532 - VSAL_I2087 - transposase 1899 37.78 0 2239038..2239352 - 104 209695533 - VSAL_I2088 - transposase 1900 44.35 +1 2240661..2241386 - 241 209695534 fabG VSAL_I2090 - 3-oxoacyl-[acyl-carrier-protein] reductase 1901 40.69 0 2241398..2241859 - 153 209695535 - VSAL_I2091 - beta-hydroxydecanoyl-ACP dehydrase 1902 42.04 0 2241856..2243061 - 401 209695536 - VSAL_I2092 - beta-ketoacyl-[ACP] synthase 1903 39.21 0 2243054..2243683 - 209 209695537 - VSAL_I2093 - putative lipoprotein 1904 40.61 0 2243694..2246030 - 778 209695538 - VSAL_I2094 - membrane protein 1905 36.39 0 2246035..2246655 - 206 209695539 - VSAL_I2095 - putative outer membrane protein 1906 40.31 0 2246648..2247106 - 152 209695540 - VSAL_I2096 - putative thioesterase 1907 42.32 0 2247106..2248641 - 511 209695541 - VSAL_I2097 - putative phenylalanine and histidine ammonia-lyase 1908 40.43 0 2248631..2250322 - 563 209695542 - VSAL_I2098 - putative glycosyl transferase 1909 38.67 0 2250325..2250699 - 124 209695543 - VSAL_I2099 - hypothetical protein 1910 40.17 0 2250711..2252084 - 457 209695544 - VSAL_I2100 - hypothetical protein 1911 40.46 0 2252081..2252641 - 186 209695545 - VSAL_I2101 - membrane protein 1912 37.70 0 2252641..2252892 - 83 209695546 - VSAL_I2102 - putative acyl carrier protein 1913 34.88 -1 2252901..2253158 - 85 209695547 - VSAL_I2103 - putative acyl carrier protein 1914 37.72 0 2253166..2253963 - 265 209695548 - VSAL_I2104 - putative acyltransferase 1915 39.75 0 2253965..2254696 - 243 209695549 - VSAL_I2105 - hypothetical protein 1916 34.72 -1 2254826..2255401 + 191 209695550 - VSAL_I2106 - putative lipoprotein 1917 38.42 0 2255434..2256573 + 379 209695551 - VSAL_I2107 - putative O-methyltransferase 1918 40.02 0 2256654..2257895 + 413 209695552 - VSAL_I2108 - FAD dependent oxidoreductase 1919 38.02 0 2257981..2258577 - 198 209695553 - VSAL_I2109 - hypothetical protein 1920 42.85 +1 2258762..2260495 + 577 209695554 argS VSAL_I2110 - arginyl-tRNA synthetase 1921 39.11 0 2260574..2261023 - 149 209695555 - VSAL_I2111 - membrane protein 1922 44.19 +1 2261339..2262535 + 398 209695556 ackA VSAL_I2112 - acetate kinase 1923 44.66 +1 2262635..2264806 + 723 209695557 pta VSAL_I2113 - phosphate acetyltransferase 1924 39.65 0 2264949..2266436 - 495 209695558 - VSAL_I2114 - transposase 1925 36.21 -1 2266508..2266855 - 115 209695559 - VSAL_I2115 - transposase 1926 37.78 0 2266852..2267166 - 104 209695560 - VSAL_I2116 - transposase 1927 41.48 0 2269187..2270008 + 273 209695561 - VSAL_I2118 - phosphate ABC transporter, extracellular solute-binding protein 1928 43.69 +1 2270085..2271011 + 308 209695562 pstC VSAL_I2119 - phosphate ABC transporter, inner membrane component 1929 38.83 0 2271016..2271870 + 284 209695563 pstA VSAL_I2120 - phosphate ABC transporter, permease protein 1930 38.53 0 2271945..2272694 + 249 209695564 pstB VSAL_I2121 - phosphate import ABC transporter, ATP-binding protein 1931 40.17 0 2273538..2273888 - 116 209695565 - VSAL_I2124 - hypothetical protein 1932 42.42 0 2274021..2274284 - 87 209695566 - VSAL_I2125 - hypothetical protein 1933 44.53 +1 2274292..2274684 - 130 209695567 - VSAL_I2126 - hypothetical protein 1934 44.25 +1 2274875..2275048 + 57 209695568 - VSAL_I2127 - hypothetical protein 1935 37.56 0 2275254..2275844 + 196 209695569 - VSAL_I2128 - hypothetical protein 1936 34.77 -1 2275921..2276547 + 208 209695570 - VSAL_I2129 - hypothetical protein 1937 37.84 0 2276649..2278289 - 546 209695571 - VSAL_I2130 - methyl-accepting chemotaxis protein 1938 37.68 0 2278417..2281293 - 958 209695572 - VSAL_I2131 - response regulator, histidine kinase 1939 39.46 0 2281368..2282363 + 331 209695573 torT VSAL_I2132 - periplasmic solute binding receptor protein 1940 40.79 0 2282428..2282883 + 151 209695574 mgsA VSAL_I2133 - methylglyoxal synthase 1941 39.58 0 2282975..2285038 - 687 209695575 - VSAL_I2134 - helicase IV 1942 40.54 0 2285204..2287408 + 734 209695576 - VSAL_I2135 - inner membrane protein 1943 38.31 0 2287475..2288620 - 381 209695577 nspC VSAL_I2136 - carboxynorspermidine decarboxylase 1944 42.33 0 2288695..2289939 - 414 209695578 - VSAL_I2137 - saccharopine dehydrogenase 1945 39.98 0 2289942..2292845 - 967 209695579 - VSAL_I2138 - putative diaminobutyrate--2-oxoglutarate aminotransferase 1946 39.28 0 2294246..2294800 - 184 209695580 pgsA VSAL_I2139 - cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferas (phosphatidylglycerophosphate synthase) 1947 38.86 0 2294845..2296671 - 608 209695581 uvrC VSAL_I2140 - UvrABC system protein C (excinuclease ABC subunit C) 1948 40.31 0 2296671..2297315 - 214 209695582 varA VSAL_I2141 - response regulator VarA 1949 37.68 0 2297501..2299870 - 789 209695583 polB VSAL_I2142 - DNA polymerase II 1950 35.14 -1 2299874..2300650 - 258 209695584 - VSAL_I2143 - hypothetical protein 1951 38.94 0 2300762..2302348 - 528 209695585 - VSAL_I2144 - putative sodium/proton antiporter 1952 42.51 0 2302858..2303271 + 137 209695586 - VSAL_I2145 - DNA binding protein, global metabolism regulator 1953 39.71 0 2303350..2304102 - 250 209695587 - VSAL_I2146 - putative MltA-interacting protein MipA 1954 33.69 -1 2304376..2305218 - 280 209695588 fadR VSAL_I2147 - fatty acid metabolism regulator protein 1955 39.35 0 2305666..2307261 + 531 209695589 - VSAL_I2148 - sodium/proton antiporter 1956 40.12 0 2307336..2307851 + 171 209695590 dsbB VSAL_I2149 - disulfide bond formation protein B (disulfide oxidoreductase) 1957 40.98 0 2307941..2308555 - 204 209695591 - VSAL_I2150 - hypothetical protein 1958 38.50 0 2308657..2309217 + 186 209695592 - VSAL_I2151 - membrane protein 1959 39.66 0 2309269..2310216 + 315 209695593 dusC VSAL_I2152 - tRNA-dihydrouridine synthase C 1960 34.22 -1 2310236..2311708 - 490 209695594 - VSAL_I2153 - membrane associated GGDEF protein 1961 37.56 0 2311829..2312656 - 275 209695595 - VSAL_I2154 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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