version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 140 37.78 0 194735..195049 - 104 209693774 - VSAL_I0155 - transposase 141 38.69 0 195363..197342 - 659 209693775 - VSAL_I0157 - membrane associated sulfatase 142 41.51 0 197379..198197 - 272 209693776 mutM VSAL_I0158 - formamidopyrimidine-DNA glycosylase 143 42.89 +1 198490..199431 + 313 209693777 hldD VSAL_I0159 - ADP-L-glycero-D-manno-heptose-6-epimerase 144 39.77 0 199602..200828 + 408 209693778 waaL VSAL_I0160 - O-antigen ligase WaaL 145 41.83 0 200825..201895 + 356 209693779 rfaF VSAL_I0161 - ADP-heptose-LPS heptosyltransferase II 146 40.06 0 201889..203151 + 420 209693780 kdtA VSAL_I0162 - 3-deoxy-D-manno-octulosonic-acid transferase 147 35.03 -1 203198..204199 + 333 209693781 - VSAL_I0163 - hypothetical protein 148 39.60 0 204352..205308 - 318 209693782 - VSAL_I0164 - transposase 149 34.78 -1 205561..206664 - 367 209693783 - VSAL_I0165 - hypothetical protein, putative pseudaminic acid biosynthesis protein 150 37.96 0 207356..208414 - 352 209693784 - VSAL_I0167 - nucleotidyl transferase 151 39.38 0 208430..209074 - 214 209693785 - VSAL_I0168 - putative acetyltransferase 152 40.13 0 209067..210140 - 357 209693786 - VSAL_I0169 - N-acetylneuraminic acid synthase 153 39.75 0 210148..211332 - 394 209693787 - VSAL_I0170 - UDP-N-acetylglucosamine 2-epimerase 154 40.75 0 211370..212515 - 381 209693788 - VSAL_I0171 - DegT/DnrJ/EryC1/StrS aminotransferase 155 37.87 0 212539..213729 - 396 209693789 - VSAL_I0172 - polysaccharide biosynthesis protein 156 33.07 -2 213847..214968 - 373 209693790 - VSAL_I0173 - hypothetical protein 157 34.03 -1 214965..216107 - 380 209693791 rffA VSAL_I0174 - lipopolysaccharide biosynthesis protein RffA 158 35.48 -1 216890..217729 - 279 209693792 wavT VSAL_I0176 - putative glycosyl transferase 159 39.43 0 217730..218287 - 185 209693793 rmlC VSAL_I0177 - dTDP-4-dehydrorhamnose 3,5-epimerase 160 38.42 0 219197..220081 - 294 209693794 rmlA VSAL_I0179 - glucose-1-phosphate thymidylyltransferase RmlA 161 39.93 0 220081..221172 - 363 209693795 rmlB VSAL_I0180 - dTDP-D-glucose-4,6-dehydratase 162 38.19 0 221194..223047 - 617 209693796 - VSAL_I0181 - membrane associated sulfatase 163 36.74 0 223080..223784 - 234 209693797 wavC VSAL_I0182 - lipopolysaccharide core oligosaccharide biosynthesis protein WavC 164 40.71 0 224160..225230 + 356 209693798 - VSAL_I0183 - glycosyl transferase 165 38.06 0 225230..226012 + 260 209693799 waaE VSAL_I0184 - glycosyl transferase 166 41.76 0 226012..227043 + 343 209693800 - VSAL_I0185 - glycosyl tranferase 167 41.10 0 227036..227524 + 162 209693801 coaD VSAL_I0186 - phosphopantetheine adenylyltransferase 168 38.69 0 227568..229547 - 659 209693802 - VSAL_I0187 - membrane protein 169 41.51 0 229584..230402 - 272 209693803 mutM VSAL_I0188 - formamidopyrimidine-DNA glycosylase 170 41.61 0 230590..231048 - 152 209693804 - VSAL_I0189 - hypothetical protein 171 38.10 0 231313..231480 - 55 209693805 rpmG VSAL_I0190 - 50S ribosomal protein L33 172 45.99 +2 231494..231730 - 78 209693806 rpmB VSAL_I0191 - 50S ribosomal protein L28 173 42.96 +1 231926..232600 - 224 209693807 radC VSAL_I0192 - DNA repair protein RadC 174 46.76 +2 232816..234036 + 406 209693808 coaBC VSAL_I0193 - coenzyme A biosynthesis bifunctional protein CoaBC 175 38.24 0 234260..234850 + 196 209693809 slmA VSAL_I0194 - HTH-type regulatory protein, TetR-family 176 43.21 +1 234906..235847 + 313 209693810 htrB VSAL_I0195 - lipid A biosynthesis lauroyl acyltransferase 177 44.02 +1 235883..236350 + 155 209693811 greB VSAL_I0196 - transcription elongation factor GreB 178 44.24 +1 236541..238877 + 778 209693812 - VSAL_I0197 - putative RNA binding protein 179 42.08 0 239187..239666 - 159 209693813 - VSAL_I0198 - hypothetical protein 180 46.06 +2 239701..240486 - 261 209693814 bioH VSAL_I0199 - carboxylesterase BioH 181 35.94 -1 240896..241777 + 293 209693815 - VSAL_I0201 - transposase 182 43.12 +1 244329..245636 - 435 209693816 envZ VSAL_I0203 - sensor outer membrane protein EnvZ 183 44.72 +1 245950..246669 - 239 209693817 ompR VSAL_I0204 - response regulator homolog OmpR 184 39.41 0 246879..247619 + 246 209693818 - VSAL_I0205 - putative partitioning protein ParA 185 44.71 +1 247781..248290 - 169 209693819 pyrE VSAL_I0206 - orotate phosphoribosyltransferase 186 47.70 +2 248525..249241 - 238 209693820 rph VSAL_I0207 - ribonuclease PH 187 44.21 +1 249413..250276 + 287 209693821 - VSAL_I0208 - outer membrane protein 188 41.03 0 250359..250787 - 142 209693822 - VSAL_I0209 - phosphate-starvation-inducible E 189 38.30 0 250943..251566 + 207 209693823 gmk VSAL_I0210 - 5'guanylate kinase 190 46.15 +2 251679..251951 + 90 209693824 rpoZ VSAL_I0211 - DNA-directed RNA polymerase, omega chain 191 44.13 +1 252018..254147 + 709 209693825 spoT VSAL_I0212 - guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase 192 39.72 0 254992..256479 - 495 209693826 - VSAL_I0214 - transposase 193 36.21 -1 256551..256898 - 115 209693827 - VSAL_I0215 - transposase 194 37.78 0 256895..257209 - 104 209693828 - VSAL_I0216 - transposase 195 41.96 0 257294..258475 - 393 209693829 hemY VSAL_I0217 - protein HemY 196 41.40 0 258472..259686 - 404 209693830 hemX VSAL_I0218 - putative uroporphyrin-III C-methyltransferase HemX 197 42.84 +1 259699..260445 - 248 209693831 hemD VSAL_I0219 - uroporphyrinogen III synthase HemD 198 44.44 +1 260447..261382 - 311 209693832 hemC VSAL_I0220 - porphobilinogen deaminase HemC 199 38.99 0 261640..264150 + 836 209693833 cya VSAL_I0221 - adenylate cyclase 200 42.99 +1 264252..266456 + 734 209693834 uvrD VSAL_I0222 - DNA helicase II UvrD 201 38.24 0 267419..268336 - 305 209693835 rarD VSAL_I0223 - chloramphenicol-sensitive protein RarD 202 41.56 0 268514..270349 + 611 209693836 recQ VSAL_I0224 - ATP-dependent DNA helicase RecQ 203 37.11 0 270353..270643 + 96 209693837 - VSAL_I0225 - hypothetical protein 204 39.79 0 270782..271447 + 221 209693838 - VSAL_I0226 - integral membrane protein 205 41.82 0 272158..274962 + 934 209693839 polA VSAL_I0227 - DNA polymerase I 206 39.26 0 275687..276361 - 224 209693840 engB VSAL_I0228 - probable gtp-binding protein EngB 207 44.82 +1 276622..277239 + 205 209693841 - VSAL_I0229 - cytochrome c 208 41.40 0 277381..278025 + 214 209693842 - VSAL_I0230 - hypothetical protein 209 39.89 0 278025..278573 + 182 209693843 - VSAL_I0231 - hypothetical protein 210 39.02 0 278576..279067 + 163 209693844 - VSAL_I0232 - hypothetical protein 211 40.90 0 279179..280552 + 457 209693845 hemN VSAL_I0233 - oxygen-independent coproporphyrinogen III oxidase 212 37.78 0 280769..281083 + 104 209693846 - VSAL_I0234 - transposase 213 36.21 -1 281080..281427 + 115 209693847 - VSAL_I0235 - transposase 214 39.72 0 281499..282986 + 495 209693848 - VSAL_I0236 - transposase 215 41.76 0 283303..284334 - 343 209693849 - VSAL_I0238 - glycosyl tranferase 216 38.06 0 284334..285116 - 260 209693850 waaE VSAL_I0239 - glucosyl transferase 217 40.20 0 285116..286237 - 373 209693851 - VSAL_I0240 - lipopolysaccharide core biosynthesis glycosyl transferase protein 218 36.74 0 286562..287266 + 234 209693852 wavC VSAL_I0241 - lipopolysaccharide core oligosaccharide biosynthesis protein WavC 219 38.19 0 287299..289152 + 617 209693853 - VSAL_I0242 - membrane associated sulfatase 220 39.93 0 289174..290265 + 363 209693854 rmlB VSAL_I0243 - dTDP-D-glucose-4,6-dehydratase 221 38.42 0 290265..291149 + 294 209693855 rmlA VSAL_I0244 - glucose-1-phosphate thymidylyltransferase RmlA 222 39.43 0 292059..292616 + 185 209693856 rmlC VSAL_I0246 - dTDP-4-dehydrorhamnose 3,5-epimerase 223 35.48 -1 292617..293456 + 279 209693857 wavT VSAL_I0247 - putative glycosyl transferase 224 34.03 -1 294239..295381 + 380 209693858 rffA VSAL_I0249 - lipopolysaccharide biosynthesis protein RffA 225 33.07 -2 295378..296499 + 373 209693859 - VSAL_I0250 - hypothetical protein 226 37.87 0 296617..297807 + 396 209693860 - VSAL_I0251 - capsular polysaccharide biosynthesis protein 227 40.75 0 297831..298976 + 381 209693861 - VSAL_I0252 - DegT/DnrJ/EryC1/StrS aminotransferase 228 39.75 0 299014..300198 + 394 209693862 - VSAL_I0253 - UDP-N-acetylglucosamine 2-epimerase 229 40.13 0 300206..301279 + 357 209693863 - VSAL_I0254 - N-acetylneuraminic acid synthase 230 39.38 0 301272..301916 + 214 209693864 - VSAL_I0255 - putative acetyltransferase 231 37.96 0 301932..302990 + 352 209693865 - VSAL_I0256 - nucleotidyl transferase 232 34.78 -1 303682..304785 + 367 209693866 - VSAL_I0258 - putative outer membrane protein 233 39.60 0 305038..305994 + 318 209693867 - VSAL_I0259 - transposase 234 35.03 -1 306147..307148 - 333 209693868 - VSAL_I0260 - hypothetical protein 235 40.06 0 307195..308457 - 420 209693869 - VSAL_I0261 - 3-deoxy-D-manno-octulosonic-acid transferase 236 41.83 0 308451..309521 - 356 209693870 - VSAL_I0262 - ADP-heptose-LPS heptosyltransferase II 237 39.77 0 309518..310744 - 408 209693871 - VSAL_I0263 - O-antigen ligase WaaL 238 42.89 +1 310915..311856 - 313 209693872 hldD VSAL_I0264 - ADP-L-glycero-D-manno-heptose-6-epimerase 239 43.78 +1 312237..313691 + 484 209693873 - VSAL_I0265 - putative metallo-beta-lactamase 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0