version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1813 38.59 0 2130818..2131369 + 183 209695447 - VSAL_I1988 - membrane protein 1814 38.13 0 2131373..2133082 + 569 209695448 - VSAL_I1989 - ABC transporter ATP-binding protein 1815 36.31 -1 2133072..2133911 + 279 209695449 - VSAL_I1990 - putative cobalt transport protein 1816 32.49 -2 2133986..2134339 - 117 209695450 - VSAL_I1991 - hypothetical protein 1817 35.94 -1 2135106..2135987 + 293 209695451 - VSAL_I1993 - transposase 1818 38.50 0 2136897..2137670 + 257 209695452 - VSAL_I1995 - phospholipase A1 precursor 1819 35.97 -1 2137808..2138452 + 214 209695453 - VSAL_I1996 - putative formate-dependent nitrite reductase complex NrfG subunit 1820 44.54 +1 2138553..2139989 - 478 209695454 nrfA VSAL_I1997 - cytochrome c-552 precursor (ammonia-forming cytochrome nitrite reductase) (cytochrome C nitrite reductase) 1821 40.24 0 2140482..2141075 + 197 209695455 nrfB VSAL_I1998 - cytochrome c-type protein NrfB precursor 1822 43.67 +1 2141077..2141763 + 228 209695456 nrfC VSAL_I1999 - cytochrome c-type biogenesis protein NrfC 1823 40.65 0 2141765..2142721 + 318 209695457 nrfD VSAL_I2000 - cytochrome c-type biogenesis protein NrfD 1824 40.12 0 2142795..2144681 + 628 209695458 ccmF VSAL_I2001 - cytochrome c-type biogenesis protein CcmF 1825 38.07 0 2144678..2145205 + 175 209695459 - VSAL_I2002 - thiol/disulfide interchange protein 1826 37.06 0 2145205..2145660 + 151 209695460 - VSAL_I2003 - cytochrome c biogenesis protein 1827 39.08 0 2145663..2146376 - 237 209695461 - VSAL_I2004 - aspartate racemase 1828 42.47 0 2146411..2147712 - 433 209695462 dcuA VSAL_I2005 - anaerobic C4-dicarboxylate transporter 1829 37.07 0 2148040..2148921 + 293 209695463 - VSAL_I2006 - HTH-type transcriptional regulator, LysR family 1830 38.19 0 2148918..2149679 - 253 209695464 - VSAL_I2007 - phosphatidylglycerophosphatase B 1831 35.92 -1 2152275..2152622 - 115 209695465 - VSAL_I2010 - transposase 1832 37.78 0 2152619..2152933 - 104 209695466 - VSAL_I2011 - transposase 1833 35.94 -1 2157061..2157942 + 293 209695467 - VSAL_I2015 - transposase 1834 41.99 0 2158722..2160326 + 534 209695468 - VSAL_I2017 - MFS transporter 1835 40.71 0 2160396..2161100 + 234 209695469 rsuA VSAL_I2018 - ribosomal small subunit pseudouridine synthase A (16S pseudouridine 516 synthase) 1836 42.45 0 2161267..2162472 + 401 209695470 bcr VSAL_I2019 - bicyclomycin resistance protein 1837 37.68 0 2162473..2163162 + 229 209695471 - VSAL_I2020 - hypothetical protein 1838 41.96 0 2164796..2166175 + 459 209695472 vcmH VSAL_I2022 - multidrug efflux pump 1839 41.96 0 2166290..2166961 + 223 209695473 - VSAL_I2023 - ABC transporter, ATP-binding protein 1840 39.93 0 2166942..2169395 + 817 209695474 - VSAL_I2024 - predicted permease 1841 39.22 0 2169395..2170516 + 373 209695475 - VSAL_I2025 - membrane protein 1842 39.43 0 2170673..2171821 + 382 209695476 nhaAv VSAL_I2026 - sodium/proton antiporter 1843 39.14 0 2171879..2173204 - 441 209695477 - VSAL_I2027 - transposase 1844 43.06 +1 2173803..2175005 + 400 209695478 - VSAL_I2028 - putative short-chain alcohol dehydrogenase 1845 41.00 0 2175149..2176831 - 560 209695479 - VSAL_I2029 - putative transport protein 1846 38.64 0 2176977..2177240 - 87 209695480 grxA VSAL_I2030 - glutaredoxin 1 1847 38.83 0 2177492..2178346 - 284 209695481 hexR VSAL_I2031 - HTH-type transcriptional regulator HexR 1848 39.23 0 2178698..2180341 - 547 209695482 - VSAL_I2032 - pyridoxal-dependent decarboxylase 1849 36.65 0 2180520..2181032 - 170 209695483 - VSAL_I2033 - hypothetical protein 1850 39.93 0 2181204..2182037 - 277 209695484 - VSAL_I2034 - membrane protein 1851 37.32 0 2182127..2183053 - 308 209695485 - VSAL_I2035 - hypothetical protein 1852 34.04 -1 2183809..2184375 - 188 209695486 - VSAL_I2037 - transposase 1853 35.70 -1 2184393..2184815 - 140 209695487 - VSAL_I2038 - transposase 1854 40.58 0 2185049..2185600 - 183 209695488 - VSAL_I2039 - hypothetical protein 1855 34.95 -1 2185906..2187207 + 433 209695489 - VSAL_I2040 - putative lipoprotein 1856 39.89 0 2187397..2188479 + 360 209695490 serC VSAL_I2041 - phosphoserine aminotransferase 1857 39.72 0 2188557..2190044 - 495 209695491 - VSAL_I2042 - transposase 1858 35.92 -1 2190116..2190463 - 115 209695492 - VSAL_I2043 - transposase 1859 37.78 0 2190460..2190774 - 104 209695493 - VSAL_I2044 - transposase 1860 38.54 0 2191622..2192140 + 172 209695494 - VSAL_I2046 - putative acetyltransferase (GNAT) family protein 1861 37.59 0 2192149..2193606 + 485 209695495 - VSAL_I2047 - membrane protein 1862 36.96 0 2193662..2194351 - 229 209695496 - VSAL_I2048 - putative multiprotein complex assembly protein 1863 38.81 0 2194501..2195376 - 291 209695497 - VSAL_I2049 - mechanosensitive ion channel 1864 39.31 0 2195378..2197738 - 786 209695498 - VSAL_I2050 - membrane protein 1865 35.94 -1 2197997..2198878 - 293 209695499 - VSAL_I2051 - transposase 1866 39.67 0 2200109..2200771 - 220 209695500 - VSAL_I2053 - inner membrane protein 1867 39.47 0 2201012..2201761 - 249 209695501 aapP VSAL_I2054 - general L-amino acid transport ATP-binding subunit 1868 41.26 0 2201786..2202883 - 365 209695502 aapM VSAL_I2055 - general L-amino acid ABC transporter permease protein 1869 40.55 0 2202886..2204007 - 373 209695503 aapQ VSAL_I2056 - general L-amino acid ABC transporter permease protein 1870 42.47 0 2204096..2205124 - 342 209695504 aapJ VSAL_I2057 - general L-amino acid-binding periplasmic protein precursor 1871 39.17 0 2205516..2206457 + 313 209695505 - VSAL_I2058 - virulence protein VirC 1872 37.70 0 2206485..2207171 + 228 209695506 - VSAL_I2059 - transcription regulator, GntR family 1873 38.55 0 2207303..2207992 - 229 209695507 - VSAL_I2060 - hypothetical protein 1874 37.36 0 2208223..2208918 - 231 209695508 - VSAL_I2061 - hypothetical protein 1875 40.59 0 2209199..2212231 + 1010 209695509 - VSAL_I2062 - FAD linked oxidase 1876 34.34 -1 2212400..2213992 + 530 209695510 - VSAL_I2063 - hypothetical protein 1877 38.10 0 2214121..2214540 + 139 209695511 - VSAL_I2064 - hypothetical protein 1878 44.87 +1 2214988..2215143 + 51 209695512 - VSAL_I2065 - hypothetical protein 1879 41.15 0 2215436..2216650 + 404 209695513 - VSAL_I2066 - group II intron reverse transcriptase/maturase 1880 42.51 0 2216849..2219170 + 773 209695514 zntA VSAL_I2067 - lead, cadmium, zinc and mercury-transporting ATPase 1881 35.08 -1 2219231..2221753 - 840 209695515 - VSAL_I2068 - membrane protein 1882 35.94 -1 2222500..2223381 - 293 209695516 - VSAL_I2070 - transposase 1883 45.13 +1 2223705..2224043 + 112 209695517 - VSAL_I2071 - hypothetical protein 1884 38.24 0 2224188..2224493 - 101 209695518 - VSAL_I2072 - hypothetical protein 1885 35.15 -1 2224789..2225283 - 164 209695519 - VSAL_I2073 - hypothetical protein 1886 42.16 0 2225514..2226170 + 218 209695520 - VSAL_I2074 - chloramphenicol acetyltransferase 1887 42.88 +1 2226488..2227576 + 362 209695521 - VSAL_I2075 - methyl-accepting chemotaxis protein 1888 36.10 -1 2227871..2228557 - 228 209695522 - VSAL_I2076 - hypothetical protein 1889 27.16 -2 2228617..2228859 - 80 209695523 - VSAL_I2077a - hypothetical protein 1890 36.37 0 2228872..2229957 - 361 209695524 serC VSAL_I2078 - phosphoserine aminotransferase 1891 36.71 0 2229962..2230702 - 246 209695525 - VSAL_I2079 - glutamine amidotransferase 1892 36.68 0 2230843..2231649 + 268 209695526 - VSAL_I2080 - HTH-type transcriptional regulator, AraC-family 1893 41.81 0 2231708..2233240 - 510 209695527 - VSAL_I2081 - putative phospholipase D 1894 41.57 0 2233560..2235284 + 574 209695528 - VSAL_I2082 - putative helicase (DEAD/DEAH box helicase) 1895 41.55 0 2235303..2235740 - 145 209695529 - VSAL_I2083 - hypothetical protein 1896 45.16 +1 2235954..2236232 + 92 209695530 rplY VSAL_I2084 - 50S ribosomal protein L25 1897 41.44 0 2236539..2236982 + 147 209695531 - VSAL_I2085 - heat shock protein 1898 36.21 -1 2238694..2239041 - 115 209695532 - VSAL_I2087 - transposase 1899 37.78 0 2239038..2239352 - 104 209695533 - VSAL_I2088 - transposase 1900 44.35 +1 2240661..2241386 - 241 209695534 fabG VSAL_I2090 - 3-oxoacyl-[acyl-carrier-protein] reductase 1901 40.69 0 2241398..2241859 - 153 209695535 - VSAL_I2091 - beta-hydroxydecanoyl-ACP dehydrase 1902 42.04 0 2241856..2243061 - 401 209695536 - VSAL_I2092 - beta-ketoacyl-[ACP] synthase 1903 39.21 0 2243054..2243683 - 209 209695537 - VSAL_I2093 - putative lipoprotein 1904 40.61 0 2243694..2246030 - 778 209695538 - VSAL_I2094 - membrane protein 1905 36.39 0 2246035..2246655 - 206 209695539 - VSAL_I2095 - putative outer membrane protein 1906 40.31 0 2246648..2247106 - 152 209695540 - VSAL_I2096 - putative thioesterase 1907 42.32 0 2247106..2248641 - 511 209695541 - VSAL_I2097 - putative phenylalanine and histidine ammonia-lyase 1908 40.43 0 2248631..2250322 - 563 209695542 - VSAL_I2098 - putative glycosyl transferase 1909 38.67 0 2250325..2250699 - 124 209695543 - VSAL_I2099 - hypothetical protein 1910 40.17 0 2250711..2252084 - 457 209695544 - VSAL_I2100 - hypothetical protein 1911 40.46 0 2252081..2252641 - 186 209695545 - VSAL_I2101 - membrane protein 1912 37.70 0 2252641..2252892 - 83 209695546 - VSAL_I2102 - putative acyl carrier protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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