IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1799	 38.98	0	2115775..2116482	-	235	209695433	-	VSAL_I1974	-	ABC transporter, ATP-binding component
1800	 38.76	0	2116807..2117469	+	220	209695434	-	VSAL_I1975	-	putative lipoprotein
1801	 38.75	0	2117471..2118430	+	319	209695435	-	VSAL_I1976	-	putative nickel transporter
1802	 37.90	0	2118542..2120293	-	583	209695436	-	VSAL_I1977	-	membrane associated GGDEF protein
1803	 36.25	-1	2120425..2121759	-	444	209695437	-	VSAL_I1978	-	signal transduction protein, histidine kinase
1804	 38.79	0	2121749..2122408	-	219	209695438	-	VSAL_I1979	-	putative transcriptional regulator
1805	 36.95	0	2122413..2122799	-	128	209695439	-	VSAL_I1980	-	hypothetical protein
1806	 36.87	0	2122929..2123606	-	225	209695440	-	VSAL_I1981	-	membrane protein
1807	 36.56	0	2123700..2124287	-	195	209695441	tfoX	VSAL_I1982	-	putative DNA transformation protein TfoX
1808	 38.62	0	2124662..2125663	-	333	209695442	purR	VSAL_I1983	-	HTH-type transcriptional repressor PurR (purine nucleotide synthesis repressor)
1809	 38.12	0	2125988..2126635	-	215	209695443	torD	VSAL_I1984	-	chaperone protein TorD
1810	 39.77	0	2126867..2127565	+	232	209695444	torR	VSAL_I1985	-	torCAD operon transcriptional regulatory protein TorR
1811	 36.80	0	2127761..2129173	+	470	209695445	-	VSAL_I1986	-	putative lipoprotein
1812	 37.67	0	2129295..2130239	+	314	209695446	rluF	VSAL_I1987	-	ribosomal large subunit pseudouridine synthase F
1813	 38.59	0	2130818..2131369	+	183	209695447	-	VSAL_I1988	-	membrane protein
1814	 38.13	0	2131373..2133082	+	569	209695448	-	VSAL_I1989	-	ABC transporter ATP-binding protein
1815	 36.31	-1	2133072..2133911	+	279	209695449	-	VSAL_I1990	-	putative cobalt transport protein
1816	 32.49	-2	2133986..2134339	-	117	209695450	-	VSAL_I1991	-	hypothetical protein
1817	 35.94	-1	2135106..2135987	+	293	209695451	-	VSAL_I1993	-	transposase
1818	 38.50	0	2136897..2137670	+	257	209695452	-	VSAL_I1995	-	phospholipase A1 precursor
1819	 35.97	-1	2137808..2138452	+	214	209695453	-	VSAL_I1996	-	putative formate-dependent nitrite reductase complex NrfG subunit
1820	 44.54	+1	2138553..2139989	-	478	209695454	nrfA	VSAL_I1997	-	cytochrome c-552 precursor (ammonia-forming cytochrome nitrite reductase) (cytochrome C nitrite reductase)
1821	 40.24	0	2140482..2141075	+	197	209695455	nrfB	VSAL_I1998	-	cytochrome c-type protein NrfB precursor
1822	 43.67	+1	2141077..2141763	+	228	209695456	nrfC	VSAL_I1999	-	cytochrome c-type biogenesis protein NrfC
1823	 40.65	0	2141765..2142721	+	318	209695457	nrfD	VSAL_I2000	-	cytochrome c-type biogenesis protein NrfD
1824	 40.12	0	2142795..2144681	+	628	209695458	ccmF	VSAL_I2001	-	cytochrome c-type biogenesis protein CcmF
1825	 38.07	0	2144678..2145205	+	175	209695459	-	VSAL_I2002	-	thiol/disulfide interchange protein
1826	 37.06	0	2145205..2145660	+	151	209695460	-	VSAL_I2003	-	cytochrome c biogenesis protein
1827	 39.08	0	2145663..2146376	-	237	209695461	-	VSAL_I2004	-	aspartate racemase
1828	 42.47	0	2146411..2147712	-	433	209695462	dcuA	VSAL_I2005	-	anaerobic C4-dicarboxylate transporter
1829	 37.07	0	2148040..2148921	+	293	209695463	-	VSAL_I2006	-	HTH-type transcriptional regulator, LysR family
1830	 38.19	0	2148918..2149679	-	253	209695464	-	VSAL_I2007	-	phosphatidylglycerophosphatase B
1831	 35.92	-1	2152275..2152622	-	115	209695465	-	VSAL_I2010	-	transposase
1832	 37.78	0	2152619..2152933	-	104	209695466	-	VSAL_I2011	-	transposase
1833	 35.94	-1	2157061..2157942	+	293	209695467	-	VSAL_I2015	-	transposase
1834	 41.99	0	2158722..2160326	+	534	209695468	-	VSAL_I2017	-	MFS transporter
1835	 40.71	0	2160396..2161100	+	234	209695469	rsuA	VSAL_I2018	-	ribosomal small subunit pseudouridine synthase A (16S pseudouridine 516 synthase)
1836	 42.45	0	2161267..2162472	+	401	209695470	bcr	VSAL_I2019	-	bicyclomycin resistance protein
1837	 37.68	0	2162473..2163162	+	229	209695471	-	VSAL_I2020	-	hypothetical protein
1838	 41.96	0	2164796..2166175	+	459	209695472	vcmH	VSAL_I2022	-	multidrug efflux pump
1839	 41.96	0	2166290..2166961	+	223	209695473	-	VSAL_I2023	-	ABC transporter, ATP-binding protein
1840	 39.93	0	2166942..2169395	+	817	209695474	-	VSAL_I2024	-	predicted permease
1841	 39.22	0	2169395..2170516	+	373	209695475	-	VSAL_I2025	-	membrane protein
1842	 39.43	0	2170673..2171821	+	382	209695476	nhaAv	VSAL_I2026	-	sodium/proton antiporter
1843	 39.14	0	2171879..2173204	-	441	209695477	-	VSAL_I2027	-	transposase
1844	 43.06	+1	2173803..2175005	+	400	209695478	-	VSAL_I2028	-	putative short-chain alcohol dehydrogenase
1845	 41.00	0	2175149..2176831	-	560	209695479	-	VSAL_I2029	-	putative transport protein
1846	 38.64	0	2176977..2177240	-	87	209695480	grxA	VSAL_I2030	-	glutaredoxin 1
1847	 38.83	0	2177492..2178346	-	284	209695481	hexR	VSAL_I2031	-	HTH-type transcriptional regulator HexR
1848	 39.23	0	2178698..2180341	-	547	209695482	-	VSAL_I2032	-	pyridoxal-dependent decarboxylase
1849	 36.65	0	2180520..2181032	-	170	209695483	-	VSAL_I2033	-	hypothetical protein
1850	 39.93	0	2181204..2182037	-	277	209695484	-	VSAL_I2034	-	membrane protein
1851	 37.32	0	2182127..2183053	-	308	209695485	-	VSAL_I2035	-	hypothetical protein
1852	 34.04	-1	2183809..2184375	-	188	209695486	-	VSAL_I2037	-	transposase
1853	 35.70	-1	2184393..2184815	-	140	209695487	-	VSAL_I2038	-	transposase
1854	 40.58	0	2185049..2185600	-	183	209695488	-	VSAL_I2039	-	hypothetical protein
1855	 34.95	-1	2185906..2187207	+	433	209695489	-	VSAL_I2040	-	putative lipoprotein
1856	 39.89	0	2187397..2188479	+	360	209695490	serC	VSAL_I2041	-	phosphoserine aminotransferase
1857	 39.72	0	2188557..2190044	-	495	209695491	-	VSAL_I2042	-	transposase
1858	 35.92	-1	2190116..2190463	-	115	209695492	-	VSAL_I2043	-	transposase
1859	 37.78	0	2190460..2190774	-	104	209695493	-	VSAL_I2044	-	transposase
1860	 38.54	0	2191622..2192140	+	172	209695494	-	VSAL_I2046	-	putative acetyltransferase (GNAT) family protein
1861	 37.59	0	2192149..2193606	+	485	209695495	-	VSAL_I2047	-	membrane protein
1862	 36.96	0	2193662..2194351	-	229	209695496	-	VSAL_I2048	-	putative multiprotein complex assembly protein
1863	 38.81	0	2194501..2195376	-	291	209695497	-	VSAL_I2049	-	mechanosensitive ion channel
1864	 39.31	0	2195378..2197738	-	786	209695498	-	VSAL_I2050	-	membrane protein
1865	 35.94	-1	2197997..2198878	-	293	209695499	-	VSAL_I2051	-	transposase
1866	 39.67	0	2200109..2200771	-	220	209695500	-	VSAL_I2053	-	inner membrane protein
1867	 39.47	0	2201012..2201761	-	249	209695501	aapP	VSAL_I2054	-	general L-amino acid transport ATP-binding subunit
1868	 41.26	0	2201786..2202883	-	365	209695502	aapM	VSAL_I2055	-	general L-amino acid ABC transporter permease protein
1869	 40.55	0	2202886..2204007	-	373	209695503	aapQ	VSAL_I2056	-	general L-amino acid ABC transporter permease protein
1870	 42.47	0	2204096..2205124	-	342	209695504	aapJ	VSAL_I2057	-	general L-amino acid-binding periplasmic protein precursor
1871	 39.17	0	2205516..2206457	+	313	209695505	-	VSAL_I2058	-	virulence protein VirC
1872	 37.70	0	2206485..2207171	+	228	209695506	-	VSAL_I2059	-	transcription regulator, GntR family
1873	 38.55	0	2207303..2207992	-	229	209695507	-	VSAL_I2060	-	hypothetical protein
1874	 37.36	0	2208223..2208918	-	231	209695508	-	VSAL_I2061	-	hypothetical protein
1875	 40.59	0	2209199..2212231	+	1010	209695509	-	VSAL_I2062	-	FAD linked oxidase
1876	 34.34	-1	2212400..2213992	+	530	209695510	-	VSAL_I2063	-	hypothetical protein
1877	 38.10	0	2214121..2214540	+	139	209695511	-	VSAL_I2064	-	hypothetical protein
1878	 44.87	+1	2214988..2215143	+	51	209695512	-	VSAL_I2065	-	hypothetical protein
1879	 41.15	0	2215436..2216650	+	404	209695513	-	VSAL_I2066	-	group II intron reverse transcriptase/maturase
1880	 42.51	0	2216849..2219170	+	773	209695514	zntA	VSAL_I2067	-	lead, cadmium, zinc and mercury-transporting ATPase
1881	 35.08	-1	2219231..2221753	-	840	209695515	-	VSAL_I2068	-	membrane protein
1882	 35.94	-1	2222500..2223381	-	293	209695516	-	VSAL_I2070	-	transposase
1883	 45.13	+1	2223705..2224043	+	112	209695517	-	VSAL_I2071	-	hypothetical protein
1884	 38.24	0	2224188..2224493	-	101	209695518	-	VSAL_I2072	-	hypothetical protein
1885	 35.15	-1	2224789..2225283	-	164	209695519	-	VSAL_I2073	-	hypothetical protein
1886	 42.16	0	2225514..2226170	+	218	209695520	-	VSAL_I2074	-	chloramphenicol acetyltransferase
1887	 42.88	+1	2226488..2227576	+	362	209695521	-	VSAL_I2075	-	methyl-accepting chemotaxis protein
1888	 36.10	-1	2227871..2228557	-	228	209695522	-	VSAL_I2076	-	hypothetical protein
1889	 27.16	-2	2228617..2228859	-	80	209695523	-	VSAL_I2077a	-	hypothetical protein
1890	 36.37	0	2228872..2229957	-	361	209695524	serC	VSAL_I2078	-	phosphoserine aminotransferase
1891	 36.71	0	2229962..2230702	-	246	209695525	-	VSAL_I2079	-	glutamine amidotransferase
1892	 36.68	0	2230843..2231649	+	268	209695526	-	VSAL_I2080	-	HTH-type transcriptional regulator, AraC-family
1893	 41.81	0	2231708..2233240	-	510	209695527	-	VSAL_I2081	-	putative phospholipase D
1894	 41.57	0	2233560..2235284	+	574	209695528	-	VSAL_I2082	-	putative helicase (DEAD/DEAH box helicase)
1895	 41.55	0	2235303..2235740	-	145	209695529	-	VSAL_I2083	-	hypothetical protein
1896	 45.16	+1	2235954..2236232	+	92	209695530	rplY	VSAL_I2084	-	50S ribosomal protein L25
1897	 41.44	0	2236539..2236982	+	147	209695531	-	VSAL_I2085	-	heat shock protein
1898	 36.21	-1	2238694..2239041	-	115	209695532	-	VSAL_I2087	-	transposase
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.