version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1776 40.68 0 2087013..2088005 + 330 209695410 oppF VSAL_I1950 - oligopeptide transport ATP-binding protein F 1777 38.51 0 2088186..2090348 + 720 209695411 - VSAL_I1951 - methyl-accepting chemotaxis protein 1778 39.90 0 2090451..2091623 - 390 209695412 - VSAL_I1952 - hypothetical protein 1779 39.97 0 2091688..2092425 - 245 209695413 pflA VSAL_I1953 - pyruvate formate-lyase 1 activating enzyme 1780 39.14 0 2092573..2093898 - 441 209695414 - VSAL_I1954 - transposase 1781 43.35 +1 2094014..2096290 - 758 209695415 pflB VSAL_I1955 - formate acetyltransferase 1 1782 37.98 0 2096688..2097548 - 286 209695416 - VSAL_I1956 - putative formate transporter 1 1783 40.86 0 2098078..2098848 + 256 209695417 aotP VSAL_I1957 - arginine/ornithine periplasmic binding protein-dependent transporter, ATP-binding component 1784 39.38 0 2098933..2099709 + 258 209695418 aotJ VSAL_I1958 - arginine/ornithine periplasmic binding protein-dependent transporter 1785 41.03 0 2099799..2100539 + 246 209695419 aotQ VSAL_I1959 - arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component 1786 39.23 0 2100542..2101219 + 225 209695420 aotM VSAL_I1960 - arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component 1787 37.48 0 2101503..2102153 - 216 209695421 grxB VSAL_I1961 - glutaredoxin 2 1788 39.16 0 2102307..2103113 - 268 209695422 xthA VSAL_I1962 - exodeoxyribonuclease III 1789 37.51 0 2104217..2105389 + 390 209695423 - VSAL_I1963 - putative secretion protein, HlyD family 1790 37.13 0 2108585..2109268 - 227 209695424 - VSAL_I1965 - hypothetical protein 1791 42.35 0 2109374..2110438 - 354 209695425 - VSAL_I1966 - putative pyridoxal-phosphate dependent enzyme 1792 36.97 0 2110558..2111025 + 155 209695426 - VSAL_I1967 - HTH-type transcriptional regulator, AsnC family 1793 42.82 +1 2111094..2111957 - 287 209695427 tesB VSAL_I1968 - acyl-CoA thioesterase II 1794 40.29 0 2112219..2112707 + 162 209695428 - VSAL_I1969 - putative lipoprotein 1795 36.96 0 2112749..2113051 - 100 209695429 - VSAL_I1970 - methylated-DNA methyltransferase 1796 40.08 0 2113168..2113908 + 246 209695430 - VSAL_I1971 - membrane protein 1797 39.04 0 2113990..2114901 - 303 209695431 - VSAL_I1972 - periplasmic solute binding protein 1798 40.36 0 2114894..2115775 - 293 209695432 - VSAL_I1973 - ABC transporter, membrane protein 1799 38.98 0 2115775..2116482 - 235 209695433 - VSAL_I1974 - ABC transporter, ATP-binding component 1800 38.76 0 2116807..2117469 + 220 209695434 - VSAL_I1975 - putative lipoprotein 1801 38.75 0 2117471..2118430 + 319 209695435 - VSAL_I1976 - putative nickel transporter 1802 37.90 0 2118542..2120293 - 583 209695436 - VSAL_I1977 - membrane associated GGDEF protein 1803 36.25 -1 2120425..2121759 - 444 209695437 - VSAL_I1978 - signal transduction protein, histidine kinase 1804 38.79 0 2121749..2122408 - 219 209695438 - VSAL_I1979 - putative transcriptional regulator 1805 36.95 0 2122413..2122799 - 128 209695439 - VSAL_I1980 - hypothetical protein 1806 36.87 0 2122929..2123606 - 225 209695440 - VSAL_I1981 - membrane protein 1807 36.56 0 2123700..2124287 - 195 209695441 tfoX VSAL_I1982 - putative DNA transformation protein TfoX 1808 38.62 0 2124662..2125663 - 333 209695442 purR VSAL_I1983 - HTH-type transcriptional repressor PurR (purine nucleotide synthesis repressor) 1809 38.12 0 2125988..2126635 - 215 209695443 torD VSAL_I1984 - chaperone protein TorD 1810 39.77 0 2126867..2127565 + 232 209695444 torR VSAL_I1985 - torCAD operon transcriptional regulatory protein TorR 1811 36.80 0 2127761..2129173 + 470 209695445 - VSAL_I1986 - putative lipoprotein 1812 37.67 0 2129295..2130239 + 314 209695446 rluF VSAL_I1987 - ribosomal large subunit pseudouridine synthase F 1813 38.59 0 2130818..2131369 + 183 209695447 - VSAL_I1988 - membrane protein 1814 38.13 0 2131373..2133082 + 569 209695448 - VSAL_I1989 - ABC transporter ATP-binding protein 1815 36.31 -1 2133072..2133911 + 279 209695449 - VSAL_I1990 - putative cobalt transport protein 1816 32.49 -2 2133986..2134339 - 117 209695450 - VSAL_I1991 - hypothetical protein 1817 35.94 -1 2135106..2135987 + 293 209695451 - VSAL_I1993 - transposase 1818 38.50 0 2136897..2137670 + 257 209695452 - VSAL_I1995 - phospholipase A1 precursor 1819 35.97 -1 2137808..2138452 + 214 209695453 - VSAL_I1996 - putative formate-dependent nitrite reductase complex NrfG subunit 1820 44.54 +1 2138553..2139989 - 478 209695454 nrfA VSAL_I1997 - cytochrome c-552 precursor (ammonia-forming cytochrome nitrite reductase) (cytochrome C nitrite reductase) 1821 40.24 0 2140482..2141075 + 197 209695455 nrfB VSAL_I1998 - cytochrome c-type protein NrfB precursor 1822 43.67 +1 2141077..2141763 + 228 209695456 nrfC VSAL_I1999 - cytochrome c-type biogenesis protein NrfC 1823 40.65 0 2141765..2142721 + 318 209695457 nrfD VSAL_I2000 - cytochrome c-type biogenesis protein NrfD 1824 40.12 0 2142795..2144681 + 628 209695458 ccmF VSAL_I2001 - cytochrome c-type biogenesis protein CcmF 1825 38.07 0 2144678..2145205 + 175 209695459 - VSAL_I2002 - thiol/disulfide interchange protein 1826 37.06 0 2145205..2145660 + 151 209695460 - VSAL_I2003 - cytochrome c biogenesis protein 1827 39.08 0 2145663..2146376 - 237 209695461 - VSAL_I2004 - aspartate racemase 1828 42.47 0 2146411..2147712 - 433 209695462 dcuA VSAL_I2005 - anaerobic C4-dicarboxylate transporter 1829 37.07 0 2148040..2148921 + 293 209695463 - VSAL_I2006 - HTH-type transcriptional regulator, LysR family 1830 38.19 0 2148918..2149679 - 253 209695464 - VSAL_I2007 - phosphatidylglycerophosphatase B 1831 35.92 -1 2152275..2152622 - 115 209695465 - VSAL_I2010 - transposase 1832 37.78 0 2152619..2152933 - 104 209695466 - VSAL_I2011 - transposase 1833 35.94 -1 2157061..2157942 + 293 209695467 - VSAL_I2015 - transposase 1834 41.99 0 2158722..2160326 + 534 209695468 - VSAL_I2017 - MFS transporter 1835 40.71 0 2160396..2161100 + 234 209695469 rsuA VSAL_I2018 - ribosomal small subunit pseudouridine synthase A (16S pseudouridine 516 synthase) 1836 42.45 0 2161267..2162472 + 401 209695470 bcr VSAL_I2019 - bicyclomycin resistance protein 1837 37.68 0 2162473..2163162 + 229 209695471 - VSAL_I2020 - hypothetical protein 1838 41.96 0 2164796..2166175 + 459 209695472 vcmH VSAL_I2022 - multidrug efflux pump 1839 41.96 0 2166290..2166961 + 223 209695473 - VSAL_I2023 - ABC transporter, ATP-binding protein 1840 39.93 0 2166942..2169395 + 817 209695474 - VSAL_I2024 - predicted permease 1841 39.22 0 2169395..2170516 + 373 209695475 - VSAL_I2025 - membrane protein 1842 39.43 0 2170673..2171821 + 382 209695476 nhaAv VSAL_I2026 - sodium/proton antiporter 1843 39.14 0 2171879..2173204 - 441 209695477 - VSAL_I2027 - transposase 1844 43.06 +1 2173803..2175005 + 400 209695478 - VSAL_I2028 - putative short-chain alcohol dehydrogenase 1845 41.00 0 2175149..2176831 - 560 209695479 - VSAL_I2029 - putative transport protein 1846 38.64 0 2176977..2177240 - 87 209695480 grxA VSAL_I2030 - glutaredoxin 1 1847 38.83 0 2177492..2178346 - 284 209695481 hexR VSAL_I2031 - HTH-type transcriptional regulator HexR 1848 39.23 0 2178698..2180341 - 547 209695482 - VSAL_I2032 - pyridoxal-dependent decarboxylase 1849 36.65 0 2180520..2181032 - 170 209695483 - VSAL_I2033 - hypothetical protein 1850 39.93 0 2181204..2182037 - 277 209695484 - VSAL_I2034 - membrane protein 1851 37.32 0 2182127..2183053 - 308 209695485 - VSAL_I2035 - hypothetical protein 1852 34.04 -1 2183809..2184375 - 188 209695486 - VSAL_I2037 - transposase 1853 35.70 -1 2184393..2184815 - 140 209695487 - VSAL_I2038 - transposase 1854 40.58 0 2185049..2185600 - 183 209695488 - VSAL_I2039 - hypothetical protein 1855 34.95 -1 2185906..2187207 + 433 209695489 - VSAL_I2040 - putative lipoprotein 1856 39.89 0 2187397..2188479 + 360 209695490 serC VSAL_I2041 - phosphoserine aminotransferase 1857 39.72 0 2188557..2190044 - 495 209695491 - VSAL_I2042 - transposase 1858 35.92 -1 2190116..2190463 - 115 209695492 - VSAL_I2043 - transposase 1859 37.78 0 2190460..2190774 - 104 209695493 - VSAL_I2044 - transposase 1860 38.54 0 2191622..2192140 + 172 209695494 - VSAL_I2046 - putative acetyltransferase (GNAT) family protein 1861 37.59 0 2192149..2193606 + 485 209695495 - VSAL_I2047 - membrane protein 1862 36.96 0 2193662..2194351 - 229 209695496 - VSAL_I2048 - putative multiprotein complex assembly protein 1863 38.81 0 2194501..2195376 - 291 209695497 - VSAL_I2049 - mechanosensitive ion channel 1864 39.31 0 2195378..2197738 - 786 209695498 - VSAL_I2050 - membrane protein 1865 35.94 -1 2197997..2198878 - 293 209695499 - VSAL_I2051 - transposase 1866 39.67 0 2200109..2200771 - 220 209695500 - VSAL_I2053 - inner membrane protein 1867 39.47 0 2201012..2201761 - 249 209695501 aapP VSAL_I2054 - general L-amino acid transport ATP-binding subunit 1868 41.26 0 2201786..2202883 - 365 209695502 aapM VSAL_I2055 - general L-amino acid ABC transporter permease protein 1869 40.55 0 2202886..2204007 - 373 209695503 aapQ VSAL_I2056 - general L-amino acid ABC transporter permease protein 1870 42.47 0 2204096..2205124 - 342 209695504 aapJ VSAL_I2057 - general L-amino acid-binding periplasmic protein precursor 1871 39.17 0 2205516..2206457 + 313 209695505 - VSAL_I2058 - virulence protein VirC 1872 37.70 0 2206485..2207171 + 228 209695506 - VSAL_I2059 - transcription regulator, GntR family 1873 38.55 0 2207303..2207992 - 229 209695507 - VSAL_I2060 - hypothetical protein 1874 37.36 0 2208223..2208918 - 231 209695508 - VSAL_I2061 - hypothetical protein 1875 40.59 0 2209199..2212231 + 1010 209695509 - VSAL_I2062 - FAD linked oxidase 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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