IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1747	 38.97	0	2049181..2049606	+	141	209695381	-	VSAL_I1915	-	putative acetyltransferase
1748	 38.94	0	2049660..2050640	-	326	209695382	-	VSAL_I1916	-	putative alcohol dehydrogenase
1749	 43.71	+1	2050803..2051120	-	105	209695383	-	VSAL_I1917	-	hypothetical protein
1750	 40.31	0	2051215..2052375	-	386	209695384	-	VSAL_I1918	-	MFS transporter
1751	 36.15	-1	2052717..2053427	+	236	209695385	-	VSAL_I1919	-	membrane protein
1752	 38.60	0	2053473..2054327	-	284	209695386	-	VSAL_I1920	-	inner membrane protein
1753	 32.61	-2	2055011..2055976	-	321	209695387	-	VSAL_I1921	-	putative membrane protein, putative phage gene
1754	 27.18	-2	2056403..2058628	-	741	209695388	-	VSAL_I1922	-	hypothetical protein, putative phage gene
1755	 34.62	-1	2059548..2060168	-	206	209695389	-	VSAL_I1924	-	hypothetical protein, putative phage gene
1756	 28.87	-2	2060173..2060799	-	208	209695390	ibrB	VSAL_I1925	-	immunoglobulin-binding regulator
1757	 37.78	0	2063208..2063522	+	104	209695391	-	VSAL_I1928	-	transposase
1758	 36.21	-1	2063519..2063866	+	115	209695392	-	VSAL_I1929	-	transposase
1759	 39.92	0	2063938..2065425	+	495	209695393	-	VSAL_I1930	-	transposase
1760	 40.40	0	2065558..2066307	-	249	209695394	moeB	VSAL_I1931	-	molybdopterin biosynthesis protein MoeB
1761	 42.09	0	2066319..2067563	-	414	209695395	moeA	VSAL_I1932	-	molybdopterin biosynthesis protein MoeA
1762	 40.98	0	2067717..2068370	+	217	209695396	folE	VSAL_I1933	-	GTP cyclohydrolase I
1763	 39.38	0	2068438..2069892	-	484	209695397	cls	VSAL_I1934	-	cardiolipin synthetase
1764	 39.35	0	2070168..2071514	+	448	209695398	-	VSAL_I1935	-	sodium-dependent transporter
1765	 34.84	-1	2071607..2072005	-	132	209695399	-	VSAL_I1936	-	hypothetical protein
1766	 37.32	0	2072018..2073220	-	400	209695400	-	VSAL_I1937	-	putative signaling protein
1767	 36.09	-1	2073336..2074061	-	241	209695401	lpxH	VSAL_I1938	-	UDP-2,3-diacylglucosamine hydrolase
1768	 39.76	0	2074118..2074615	-	165	209695402	ppiB	VSAL_I1939	-	peptidyl-prolyl cis-trans isomerase B
1769	 40.10	0	2074764..2076152	+	462	209695403	cysS	VSAL_I1940	-	cysteinyl-tRNA synthetase
1770	 37.65	0	2076233..2076811	+	192	209695404	tdk	VSAL_I1941	-	thymidine kinase
1771	 37.78	0	2077364..2077678	+	104	209695405	-	VSAL_I1943	-	transposase
1772	 36.21	-1	2077675..2078022	+	115	209695406	-	VSAL_I1944	-	transposase
1773	 40.00	0	2082386..2084050	+	554	209695407	oppA	VSAL_I1946	-	oligopeptide transport system permease protein B
1774	 41.86	0	2085095..2085997	+	300	209695408	oppC	VSAL_I1948	-	oligopeptide transport system permease protein C
1775	 40.58	0	2086048..2087013	+	321	209695409	oppD	VSAL_I1949	-	oligopeptide transport ATP-binding protein D
1776	 40.68	0	2087013..2088005	+	330	209695410	oppF	VSAL_I1950	-	oligopeptide transport ATP-binding protein F
1777	 38.51	0	2088186..2090348	+	720	209695411	-	VSAL_I1951	-	methyl-accepting chemotaxis protein
1778	 39.90	0	2090451..2091623	-	390	209695412	-	VSAL_I1952	-	hypothetical protein
1779	 39.97	0	2091688..2092425	-	245	209695413	pflA	VSAL_I1953	-	pyruvate formate-lyase 1 activating enzyme
1780	 39.14	0	2092573..2093898	-	441	209695414	-	VSAL_I1954	-	transposase
1781	 43.35	+1	2094014..2096290	-	758	209695415	pflB	VSAL_I1955	-	formate acetyltransferase 1
1782	 37.98	0	2096688..2097548	-	286	209695416	-	VSAL_I1956	-	putative formate transporter 1
1783	 40.86	0	2098078..2098848	+	256	209695417	aotP	VSAL_I1957	-	arginine/ornithine periplasmic binding protein-dependent transporter, ATP-binding component
1784	 39.38	0	2098933..2099709	+	258	209695418	aotJ	VSAL_I1958	-	arginine/ornithine periplasmic binding protein-dependent transporter
1785	 41.03	0	2099799..2100539	+	246	209695419	aotQ	VSAL_I1959	-	arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component
1786	 39.23	0	2100542..2101219	+	225	209695420	aotM	VSAL_I1960	-	arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component
1787	 37.48	0	2101503..2102153	-	216	209695421	grxB	VSAL_I1961	-	glutaredoxin 2
1788	 39.16	0	2102307..2103113	-	268	209695422	xthA	VSAL_I1962	-	exodeoxyribonuclease III
1789	 37.51	0	2104217..2105389	+	390	209695423	-	VSAL_I1963	-	putative secretion protein, HlyD family
1790	 37.13	0	2108585..2109268	-	227	209695424	-	VSAL_I1965	-	hypothetical protein
1791	 42.35	0	2109374..2110438	-	354	209695425	-	VSAL_I1966	-	putative pyridoxal-phosphate dependent enzyme
1792	 36.97	0	2110558..2111025	+	155	209695426	-	VSAL_I1967	-	HTH-type transcriptional regulator, AsnC family
1793	 42.82	+1	2111094..2111957	-	287	209695427	tesB	VSAL_I1968	-	acyl-CoA thioesterase II
1794	 40.29	0	2112219..2112707	+	162	209695428	-	VSAL_I1969	-	putative lipoprotein
1795	 36.96	0	2112749..2113051	-	100	209695429	-	VSAL_I1970	-	methylated-DNA methyltransferase
1796	 40.08	0	2113168..2113908	+	246	209695430	-	VSAL_I1971	-	membrane protein
1797	 39.04	0	2113990..2114901	-	303	209695431	-	VSAL_I1972	-	periplasmic solute binding protein
1798	 40.36	0	2114894..2115775	-	293	209695432	-	VSAL_I1973	-	ABC transporter, membrane protein
1799	 38.98	0	2115775..2116482	-	235	209695433	-	VSAL_I1974	-	ABC transporter, ATP-binding component
1800	 38.76	0	2116807..2117469	+	220	209695434	-	VSAL_I1975	-	putative lipoprotein
1801	 38.75	0	2117471..2118430	+	319	209695435	-	VSAL_I1976	-	putative nickel transporter
1802	 37.90	0	2118542..2120293	-	583	209695436	-	VSAL_I1977	-	membrane associated GGDEF protein
1803	 36.25	-1	2120425..2121759	-	444	209695437	-	VSAL_I1978	-	signal transduction protein, histidine kinase
1804	 38.79	0	2121749..2122408	-	219	209695438	-	VSAL_I1979	-	putative transcriptional regulator
1805	 36.95	0	2122413..2122799	-	128	209695439	-	VSAL_I1980	-	hypothetical protein
1806	 36.87	0	2122929..2123606	-	225	209695440	-	VSAL_I1981	-	membrane protein
1807	 36.56	0	2123700..2124287	-	195	209695441	tfoX	VSAL_I1982	-	putative DNA transformation protein TfoX
1808	 38.62	0	2124662..2125663	-	333	209695442	purR	VSAL_I1983	-	HTH-type transcriptional repressor PurR (purine nucleotide synthesis repressor)
1809	 38.12	0	2125988..2126635	-	215	209695443	torD	VSAL_I1984	-	chaperone protein TorD
1810	 39.77	0	2126867..2127565	+	232	209695444	torR	VSAL_I1985	-	torCAD operon transcriptional regulatory protein TorR
1811	 36.80	0	2127761..2129173	+	470	209695445	-	VSAL_I1986	-	putative lipoprotein
1812	 37.67	0	2129295..2130239	+	314	209695446	rluF	VSAL_I1987	-	ribosomal large subunit pseudouridine synthase F
1813	 38.59	0	2130818..2131369	+	183	209695447	-	VSAL_I1988	-	membrane protein
1814	 38.13	0	2131373..2133082	+	569	209695448	-	VSAL_I1989	-	ABC transporter ATP-binding protein
1815	 36.31	-1	2133072..2133911	+	279	209695449	-	VSAL_I1990	-	putative cobalt transport protein
1816	 32.49	-2	2133986..2134339	-	117	209695450	-	VSAL_I1991	-	hypothetical protein
1817	 35.94	-1	2135106..2135987	+	293	209695451	-	VSAL_I1993	-	transposase
1818	 38.50	0	2136897..2137670	+	257	209695452	-	VSAL_I1995	-	phospholipase A1 precursor
1819	 35.97	-1	2137808..2138452	+	214	209695453	-	VSAL_I1996	-	putative formate-dependent nitrite reductase complex NrfG subunit
1820	 44.54	+1	2138553..2139989	-	478	209695454	nrfA	VSAL_I1997	-	cytochrome c-552 precursor (ammonia-forming cytochrome nitrite reductase) (cytochrome C nitrite reductase)
1821	 40.24	0	2140482..2141075	+	197	209695455	nrfB	VSAL_I1998	-	cytochrome c-type protein NrfB precursor
1822	 43.67	+1	2141077..2141763	+	228	209695456	nrfC	VSAL_I1999	-	cytochrome c-type biogenesis protein NrfC
1823	 40.65	0	2141765..2142721	+	318	209695457	nrfD	VSAL_I2000	-	cytochrome c-type biogenesis protein NrfD
1824	 40.12	0	2142795..2144681	+	628	209695458	ccmF	VSAL_I2001	-	cytochrome c-type biogenesis protein CcmF
1825	 38.07	0	2144678..2145205	+	175	209695459	-	VSAL_I2002	-	thiol/disulfide interchange protein
1826	 37.06	0	2145205..2145660	+	151	209695460	-	VSAL_I2003	-	cytochrome c biogenesis protein
1827	 39.08	0	2145663..2146376	-	237	209695461	-	VSAL_I2004	-	aspartate racemase
1828	 42.47	0	2146411..2147712	-	433	209695462	dcuA	VSAL_I2005	-	anaerobic C4-dicarboxylate transporter
1829	 37.07	0	2148040..2148921	+	293	209695463	-	VSAL_I2006	-	HTH-type transcriptional regulator, LysR family
1830	 38.19	0	2148918..2149679	-	253	209695464	-	VSAL_I2007	-	phosphatidylglycerophosphatase B
1831	 35.92	-1	2152275..2152622	-	115	209695465	-	VSAL_I2010	-	transposase
1832	 37.78	0	2152619..2152933	-	104	209695466	-	VSAL_I2011	-	transposase
1833	 35.94	-1	2157061..2157942	+	293	209695467	-	VSAL_I2015	-	transposase
1834	 41.99	0	2158722..2160326	+	534	209695468	-	VSAL_I2017	-	MFS transporter
1835	 40.71	0	2160396..2161100	+	234	209695469	rsuA	VSAL_I2018	-	ribosomal small subunit pseudouridine synthase A (16S pseudouridine 516 synthase)
1836	 42.45	0	2161267..2162472	+	401	209695470	bcr	VSAL_I2019	-	bicyclomycin resistance protein
1837	 37.68	0	2162473..2163162	+	229	209695471	-	VSAL_I2020	-	hypothetical protein
1838	 41.96	0	2164796..2166175	+	459	209695472	vcmH	VSAL_I2022	-	multidrug efflux pump
1839	 41.96	0	2166290..2166961	+	223	209695473	-	VSAL_I2023	-	ABC transporter, ATP-binding protein
1840	 39.93	0	2166942..2169395	+	817	209695474	-	VSAL_I2024	-	predicted permease
1841	 39.22	0	2169395..2170516	+	373	209695475	-	VSAL_I2025	-	membrane protein
1842	 39.43	0	2170673..2171821	+	382	209695476	nhaAv	VSAL_I2026	-	sodium/proton antiporter
1843	 39.14	0	2171879..2173204	-	441	209695477	-	VSAL_I2027	-	transposase
1844	 43.06	+1	2173803..2175005	+	400	209695478	-	VSAL_I2028	-	putative short-chain alcohol dehydrogenase
1845	 41.00	0	2175149..2176831	-	560	209695479	-	VSAL_I2029	-	putative transport protein
1846	 38.64	0	2176977..2177240	-	87	209695480	grxA	VSAL_I2030	-	glutaredoxin 1
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.