version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1722 41.22 0 2024185..2025198 + 337 209695356 ruvB VSAL_I1889 - holliday junction ATP-dependent DNA helicase RuvB 1723 40.38 0 2025572..2027161 + 529 209695357 cydA VSAL_I1890 - cytochrome d ubiquinol oxidase subunit I 1724 39.40 0 2027179..2028315 + 378 209695358 cydB VSAL_I1891 - cytochrome d ubiquinol oxidase subunit II 1725 37.96 0 2028327..2028434 + 35 209695359 - VSAL_I1892 - hypothetical protein 1726 35.97 -1 2028427..2028729 + 100 209695360 - VSAL_I1893 - membrane protein 1727 36.54 0 2028919..2029323 + 134 209695361 ybgC VSAL_I1894 - acyl-CoA thioester hydrolase 1728 39.30 0 2029313..2029999 + 228 209695362 tolQ VSAL_I1895 - TolQ protein, inner membrane component 1729 40.04 0 2029999..2030445 + 148 209695363 tolR VSAL_I1896 - TolR protein, membrane component 1730 40.18 0 2030462..2031469 + 335 209695364 tolA VSAL_I1897 - TolA protein, membrane component 1731 39.39 0 2031480..2032832 + 450 209695365 tolB VSAL_I1898 - TolB protein precursor, periplasmic component 1732 42.47 0 2032865..2033422 + 185 209695366 pal VSAL_I1899 - peptidoglycan-associated lipoprotein precursor 1733 41.18 0 2033447..2034211 + 254 209695367 - VSAL_I1900 - hypothetical protein 1734 40.67 0 2034338..2035387 + 349 209695368 nadA VSAL_I1901 - quinolinate synthetase A 1735 33.12 -2 2035463..2035921 - 152 209695369 - VSAL_I1902 - hypothetical protein 1736 35.81 -1 2036033..2037040 - 335 209695370 - VSAL_I1903 - HTH-type transcriptional regulator, AraC family 1737 40.29 0 2037316..2038437 + 373 209695371 - VSAL_I1904 - secretion protein, HlyD family 1738 35.20 -1 2038427..2039446 + 339 209695372 - VSAL_I1905 - membrane protein 1739 39.92 0 2039473..2040534 + 353 209695373 - VSAL_I1906 - membrane protein 1740 33.63 -1 2040537..2041199 + 220 209695374 - VSAL_I1907 - putative ion channel 1741 40.13 0 2041652..2042254 - 200 209695375 - VSAL_I1908 - hypothetical protein 1742 39.14 0 2042634..2043029 + 131 209695376 - VSAL_I1909 - membrane protein 1743 35.70 -1 2045374..2045796 + 140 209695377 - VSAL_I1911 - transposase 1744 34.04 -1 2045814..2046380 + 188 209695378 - VSAL_I1912 - transposase 1745 37.12 0 2047052..2047447 + 131 209695379 - VSAL_I1913 - hypothetical protein 1746 40.68 0 2047714..2049075 + 453 209695380 - VSAL_I1914 - putative GTP-binding protein 1747 38.97 0 2049181..2049606 + 141 209695381 - VSAL_I1915 - putative acetyltransferase 1748 38.94 0 2049660..2050640 - 326 209695382 - VSAL_I1916 - putative alcohol dehydrogenase 1749 43.71 +1 2050803..2051120 - 105 209695383 - VSAL_I1917 - hypothetical protein 1750 40.31 0 2051215..2052375 - 386 209695384 - VSAL_I1918 - MFS transporter 1751 36.15 -1 2052717..2053427 + 236 209695385 - VSAL_I1919 - membrane protein 1752 38.60 0 2053473..2054327 - 284 209695386 - VSAL_I1920 - inner membrane protein 1753 32.61 -2 2055011..2055976 - 321 209695387 - VSAL_I1921 - putative membrane protein, putative phage gene 1754 27.18 -2 2056403..2058628 - 741 209695388 - VSAL_I1922 - hypothetical protein, putative phage gene 1755 34.62 -1 2059548..2060168 - 206 209695389 - VSAL_I1924 - hypothetical protein, putative phage gene 1756 28.87 -2 2060173..2060799 - 208 209695390 ibrB VSAL_I1925 - immunoglobulin-binding regulator 1757 37.78 0 2063208..2063522 + 104 209695391 - VSAL_I1928 - transposase 1758 36.21 -1 2063519..2063866 + 115 209695392 - VSAL_I1929 - transposase 1759 39.92 0 2063938..2065425 + 495 209695393 - VSAL_I1930 - transposase 1760 40.40 0 2065558..2066307 - 249 209695394 moeB VSAL_I1931 - molybdopterin biosynthesis protein MoeB 1761 42.09 0 2066319..2067563 - 414 209695395 moeA VSAL_I1932 - molybdopterin biosynthesis protein MoeA 1762 40.98 0 2067717..2068370 + 217 209695396 folE VSAL_I1933 - GTP cyclohydrolase I 1763 39.38 0 2068438..2069892 - 484 209695397 cls VSAL_I1934 - cardiolipin synthetase 1764 39.35 0 2070168..2071514 + 448 209695398 - VSAL_I1935 - sodium-dependent transporter 1765 34.84 -1 2071607..2072005 - 132 209695399 - VSAL_I1936 - hypothetical protein 1766 37.32 0 2072018..2073220 - 400 209695400 - VSAL_I1937 - putative signaling protein 1767 36.09 -1 2073336..2074061 - 241 209695401 lpxH VSAL_I1938 - UDP-2,3-diacylglucosamine hydrolase 1768 39.76 0 2074118..2074615 - 165 209695402 ppiB VSAL_I1939 - peptidyl-prolyl cis-trans isomerase B 1769 40.10 0 2074764..2076152 + 462 209695403 cysS VSAL_I1940 - cysteinyl-tRNA synthetase 1770 37.65 0 2076233..2076811 + 192 209695404 tdk VSAL_I1941 - thymidine kinase 1771 37.78 0 2077364..2077678 + 104 209695405 - VSAL_I1943 - transposase 1772 36.21 -1 2077675..2078022 + 115 209695406 - VSAL_I1944 - transposase 1773 40.00 0 2082386..2084050 + 554 209695407 oppA VSAL_I1946 - oligopeptide transport system permease protein B 1774 41.86 0 2085095..2085997 + 300 209695408 oppC VSAL_I1948 - oligopeptide transport system permease protein C 1775 40.58 0 2086048..2087013 + 321 209695409 oppD VSAL_I1949 - oligopeptide transport ATP-binding protein D 1776 40.68 0 2087013..2088005 + 330 209695410 oppF VSAL_I1950 - oligopeptide transport ATP-binding protein F 1777 38.51 0 2088186..2090348 + 720 209695411 - VSAL_I1951 - methyl-accepting chemotaxis protein 1778 39.90 0 2090451..2091623 - 390 209695412 - VSAL_I1952 - hypothetical protein 1779 39.97 0 2091688..2092425 - 245 209695413 pflA VSAL_I1953 - pyruvate formate-lyase 1 activating enzyme 1780 39.14 0 2092573..2093898 - 441 209695414 - VSAL_I1954 - transposase 1781 43.35 +1 2094014..2096290 - 758 209695415 pflB VSAL_I1955 - formate acetyltransferase 1 1782 37.98 0 2096688..2097548 - 286 209695416 - VSAL_I1956 - putative formate transporter 1 1783 40.86 0 2098078..2098848 + 256 209695417 aotP VSAL_I1957 - arginine/ornithine periplasmic binding protein-dependent transporter, ATP-binding component 1784 39.38 0 2098933..2099709 + 258 209695418 aotJ VSAL_I1958 - arginine/ornithine periplasmic binding protein-dependent transporter 1785 41.03 0 2099799..2100539 + 246 209695419 aotQ VSAL_I1959 - arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component 1786 39.23 0 2100542..2101219 + 225 209695420 aotM VSAL_I1960 - arginine/ornithine periplasmic binding protein-dependent transporter, inner membrane component 1787 37.48 0 2101503..2102153 - 216 209695421 grxB VSAL_I1961 - glutaredoxin 2 1788 39.16 0 2102307..2103113 - 268 209695422 xthA VSAL_I1962 - exodeoxyribonuclease III 1789 37.51 0 2104217..2105389 + 390 209695423 - VSAL_I1963 - putative secretion protein, HlyD family 1790 37.13 0 2108585..2109268 - 227 209695424 - VSAL_I1965 - hypothetical protein 1791 42.35 0 2109374..2110438 - 354 209695425 - VSAL_I1966 - putative pyridoxal-phosphate dependent enzyme 1792 36.97 0 2110558..2111025 + 155 209695426 - VSAL_I1967 - HTH-type transcriptional regulator, AsnC family 1793 42.82 +1 2111094..2111957 - 287 209695427 tesB VSAL_I1968 - acyl-CoA thioesterase II 1794 40.29 0 2112219..2112707 + 162 209695428 - VSAL_I1969 - putative lipoprotein 1795 36.96 0 2112749..2113051 - 100 209695429 - VSAL_I1970 - methylated-DNA methyltransferase 1796 40.08 0 2113168..2113908 + 246 209695430 - VSAL_I1971 - membrane protein 1797 39.04 0 2113990..2114901 - 303 209695431 - VSAL_I1972 - periplasmic solute binding protein 1798 40.36 0 2114894..2115775 - 293 209695432 - VSAL_I1973 - ABC transporter, membrane protein 1799 38.98 0 2115775..2116482 - 235 209695433 - VSAL_I1974 - ABC transporter, ATP-binding component 1800 38.76 0 2116807..2117469 + 220 209695434 - VSAL_I1975 - putative lipoprotein 1801 38.75 0 2117471..2118430 + 319 209695435 - VSAL_I1976 - putative nickel transporter 1802 37.90 0 2118542..2120293 - 583 209695436 - VSAL_I1977 - membrane associated GGDEF protein 1803 36.25 -1 2120425..2121759 - 444 209695437 - VSAL_I1978 - signal transduction protein, histidine kinase 1804 38.79 0 2121749..2122408 - 219 209695438 - VSAL_I1979 - putative transcriptional regulator 1805 36.95 0 2122413..2122799 - 128 209695439 - VSAL_I1980 - hypothetical protein 1806 36.87 0 2122929..2123606 - 225 209695440 - VSAL_I1981 - membrane protein 1807 36.56 0 2123700..2124287 - 195 209695441 tfoX VSAL_I1982 - putative DNA transformation protein TfoX 1808 38.62 0 2124662..2125663 - 333 209695442 purR VSAL_I1983 - HTH-type transcriptional repressor PurR (purine nucleotide synthesis repressor) 1809 38.12 0 2125988..2126635 - 215 209695443 torD VSAL_I1984 - chaperone protein TorD 1810 39.77 0 2126867..2127565 + 232 209695444 torR VSAL_I1985 - torCAD operon transcriptional regulatory protein TorR 1811 36.80 0 2127761..2129173 + 470 209695445 - VSAL_I1986 - putative lipoprotein 1812 37.67 0 2129295..2130239 + 314 209695446 rluF VSAL_I1987 - ribosomal large subunit pseudouridine synthase F 1813 38.59 0 2130818..2131369 + 183 209695447 - VSAL_I1988 - membrane protein 1814 38.13 0 2131373..2133082 + 569 209695448 - VSAL_I1989 - ABC transporter ATP-binding protein 1815 36.31 -1 2133072..2133911 + 279 209695449 - VSAL_I1990 - putative cobalt transport protein 1816 32.49 -2 2133986..2134339 - 117 209695450 - VSAL_I1991 - hypothetical protein 1817 35.94 -1 2135106..2135987 + 293 209695451 - VSAL_I1993 - transposase 1818 38.50 0 2136897..2137670 + 257 209695452 - VSAL_I1995 - phospholipase A1 precursor 1819 35.97 -1 2137808..2138452 + 214 209695453 - VSAL_I1996 - putative formate-dependent nitrite reductase complex NrfG subunit 1820 44.54 +1 2138553..2139989 - 478 209695454 nrfA VSAL_I1997 - cytochrome c-552 precursor (ammonia-forming cytochrome nitrite reductase) (cytochrome C nitrite reductase) 1821 40.24 0 2140482..2141075 + 197 209695455 nrfB VSAL_I1998 - cytochrome c-type protein NrfB precursor 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.