IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
123	 39.73	0	171464..172792	+	442	209693757	iucD	VSAL_I0135	-	siderophore biosynthetis protein
124	 39.67	0	172803..175262	+	819	209693758	iucC	VSAL_I0136	-	siderophore biosynthesis protein
125	 40.58	0	175286..177451	+	721	209693759	-	VSAL_I0137	-	TonB-dependent iron-siderophore receptor precursor
126	 43.32	+1	177570..178520	+	316	209693760	-	VSAL_I0138	-	iron-siderophore ABC transporter, periplasmic binding protein
127	 43.42	+1	178517..179617	+	366	209693761	fepD	VSAL_I0139	-	iron-siderophore ABC transporter, membrane permease component
128	 46.00	+2	179607..180632	+	341	209693762	fecD	VSAL_I0140	-	iron-siderophore ABC transporter, membrane permease component
129	 43.00	+1	180647..181453	+	268	209693763	fepC	VSAL_I0141	-	iron-siderophore ABC transporter, ATP-binding protein
130	 37.78	0	181578..181892	+	104	209693764	-	VSAL_I0142	-	transposase
131	 36.21	-1	181889..182236	+	115	209693765	-	VSAL_I0143	-	transposase
132	 39.72	0	182308..183795	+	495	209693766	-	VSAL_I0144	-	transposase
133	 43.75	+1	185316..186620	-	434	209693767	rhlB	VSAL_I0146	-	ATP-dependent RNA helicase RhlB
134	 40.67	0	186733..187059	+	108	209693768	trxA	VSAL_I0147	-	thioredoxin 1
135	 41.83	0	187298..188557	+	419	209693769	rho	VSAL_I0148	-	transcription termination factor rho
136	 41.74	0	188701..189723	+	340	209693770	-	VSAL_I0149	-	hypothetical protein
137	 42.56	+1	189820..191661	+	613	209693771	ubiD	VSAL_I0150	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
138	 39.02	0	191658..191921	+	87	209693772	-	VSAL_I0151	-	putative ferredoxin
139	 43.46	+1	192020..192730	+	236	209693773	fre	VSAL_I0152	-	NAD(P)H-flavin reductase
140	 37.78	0	194735..195049	-	104	209693774	-	VSAL_I0155	-	transposase
141	 38.69	0	195363..197342	-	659	209693775	-	VSAL_I0157	-	membrane associated sulfatase
142	 41.51	0	197379..198197	-	272	209693776	mutM	VSAL_I0158	-	formamidopyrimidine-DNA glycosylase
143	 42.89	+1	198490..199431	+	313	209693777	hldD	VSAL_I0159	-	ADP-L-glycero-D-manno-heptose-6-epimerase
144	 39.77	0	199602..200828	+	408	209693778	waaL	VSAL_I0160	-	O-antigen ligase WaaL
145	 41.83	0	200825..201895	+	356	209693779	rfaF	VSAL_I0161	-	ADP-heptose-LPS heptosyltransferase II
146	 40.06	0	201889..203151	+	420	209693780	kdtA	VSAL_I0162	-	3-deoxy-D-manno-octulosonic-acid transferase
147	 35.03	-1	203198..204199	+	333	209693781	-	VSAL_I0163	-	hypothetical protein
148	 39.60	0	204352..205308	-	318	209693782	-	VSAL_I0164	-	transposase
149	 34.78	-1	205561..206664	-	367	209693783	-	VSAL_I0165	-	hypothetical protein, putative pseudaminic acid biosynthesis protein
150	 37.96	0	207356..208414	-	352	209693784	-	VSAL_I0167	-	nucleotidyl transferase
151	 39.38	0	208430..209074	-	214	209693785	-	VSAL_I0168	-	putative acetyltransferase
152	 40.13	0	209067..210140	-	357	209693786	-	VSAL_I0169	-	N-acetylneuraminic acid synthase
153	 39.75	0	210148..211332	-	394	209693787	-	VSAL_I0170	-	UDP-N-acetylglucosamine 2-epimerase
154	 40.75	0	211370..212515	-	381	209693788	-	VSAL_I0171	-	DegT/DnrJ/EryC1/StrS aminotransferase
155	 37.87	0	212539..213729	-	396	209693789	-	VSAL_I0172	-	polysaccharide biosynthesis protein
156	 33.07	-2	213847..214968	-	373	209693790	-	VSAL_I0173	-	hypothetical protein
157	 34.03	-1	214965..216107	-	380	209693791	rffA	VSAL_I0174	-	lipopolysaccharide biosynthesis protein RffA
158	 35.48	-1	216890..217729	-	279	209693792	wavT	VSAL_I0176	-	putative glycosyl transferase
159	 39.43	0	217730..218287	-	185	209693793	rmlC	VSAL_I0177	-	dTDP-4-dehydrorhamnose 3,5-epimerase
160	 38.42	0	219197..220081	-	294	209693794	rmlA	VSAL_I0179	-	glucose-1-phosphate thymidylyltransferase RmlA
161	 39.93	0	220081..221172	-	363	209693795	rmlB	VSAL_I0180	-	dTDP-D-glucose-4,6-dehydratase
162	 38.19	0	221194..223047	-	617	209693796	-	VSAL_I0181	-	membrane associated sulfatase
163	 36.74	0	223080..223784	-	234	209693797	wavC	VSAL_I0182	-	lipopolysaccharide core oligosaccharide biosynthesis protein WavC
164	 40.71	0	224160..225230	+	356	209693798	-	VSAL_I0183	-	glycosyl transferase
165	 38.06	0	225230..226012	+	260	209693799	waaE	VSAL_I0184	-	glycosyl transferase
166	 41.76	0	226012..227043	+	343	209693800	-	VSAL_I0185	-	glycosyl tranferase
167	 41.10	0	227036..227524	+	162	209693801	coaD	VSAL_I0186	-	phosphopantetheine adenylyltransferase
168	 38.69	0	227568..229547	-	659	209693802	-	VSAL_I0187	-	membrane protein
169	 41.51	0	229584..230402	-	272	209693803	mutM	VSAL_I0188	-	formamidopyrimidine-DNA glycosylase
170	 41.61	0	230590..231048	-	152	209693804	-	VSAL_I0189	-	hypothetical protein
171	 38.10	0	231313..231480	-	55	209693805	rpmG	VSAL_I0190	-	50S ribosomal protein L33
172	 45.99	+2	231494..231730	-	78	209693806	rpmB	VSAL_I0191	-	50S ribosomal protein L28
173	 42.96	+1	231926..232600	-	224	209693807	radC	VSAL_I0192	-	DNA repair protein RadC
174	 46.76	+2	232816..234036	+	406	209693808	coaBC	VSAL_I0193	-	coenzyme A biosynthesis bifunctional protein CoaBC
175	 38.24	0	234260..234850	+	196	209693809	slmA	VSAL_I0194	-	HTH-type regulatory protein, TetR-family
176	 43.21	+1	234906..235847	+	313	209693810	htrB	VSAL_I0195	-	lipid A biosynthesis lauroyl acyltransferase
177	 44.02	+1	235883..236350	+	155	209693811	greB	VSAL_I0196	-	transcription elongation factor GreB
178	 44.24	+1	236541..238877	+	778	209693812	-	VSAL_I0197	-	putative RNA binding protein
179	 42.08	0	239187..239666	-	159	209693813	-	VSAL_I0198	-	hypothetical protein
180	 46.06	+2	239701..240486	-	261	209693814	bioH	VSAL_I0199	-	carboxylesterase BioH
181	 35.94	-1	240896..241777	+	293	209693815	-	VSAL_I0201	-	transposase
182	 43.12	+1	244329..245636	-	435	209693816	envZ	VSAL_I0203	-	sensor outer membrane protein EnvZ
183	 44.72	+1	245950..246669	-	239	209693817	ompR	VSAL_I0204	-	response regulator homolog OmpR
184	 39.41	0	246879..247619	+	246	209693818	-	VSAL_I0205	-	putative partitioning protein ParA
185	 44.71	+1	247781..248290	-	169	209693819	pyrE	VSAL_I0206	-	orotate phosphoribosyltransferase
186	 47.70	+2	248525..249241	-	238	209693820	rph	VSAL_I0207	-	ribonuclease PH
187	 44.21	+1	249413..250276	+	287	209693821	-	VSAL_I0208	-	outer membrane protein
188	 41.03	0	250359..250787	-	142	209693822	-	VSAL_I0209	-	phosphate-starvation-inducible E
189	 38.30	0	250943..251566	+	207	209693823	gmk	VSAL_I0210	-	5'guanylate kinase
190	 46.15	+2	251679..251951	+	90	209693824	rpoZ	VSAL_I0211	-	DNA-directed RNA polymerase, omega chain
191	 44.13	+1	252018..254147	+	709	209693825	spoT	VSAL_I0212	-	guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase
192	 39.72	0	254992..256479	-	495	209693826	-	VSAL_I0214	-	transposase
193	 36.21	-1	256551..256898	-	115	209693827	-	VSAL_I0215	-	transposase
194	 37.78	0	256895..257209	-	104	209693828	-	VSAL_I0216	-	transposase
195	 41.96	0	257294..258475	-	393	209693829	hemY	VSAL_I0217	-	protein HemY
196	 41.40	0	258472..259686	-	404	209693830	hemX	VSAL_I0218	-	putative uroporphyrin-III C-methyltransferase HemX
197	 42.84	+1	259699..260445	-	248	209693831	hemD	VSAL_I0219	-	uroporphyrinogen III synthase HemD
198	 44.44	+1	260447..261382	-	311	209693832	hemC	VSAL_I0220	-	porphobilinogen deaminase HemC
199	 38.99	0	261640..264150	+	836	209693833	cya	VSAL_I0221	-	adenylate cyclase
200	 42.99	+1	264252..266456	+	734	209693834	uvrD	VSAL_I0222	-	DNA helicase II UvrD
201	 38.24	0	267419..268336	-	305	209693835	rarD	VSAL_I0223	-	chloramphenicol-sensitive protein RarD
202	 41.56	0	268514..270349	+	611	209693836	recQ	VSAL_I0224	-	ATP-dependent DNA helicase RecQ
203	 37.11	0	270353..270643	+	96	209693837	-	VSAL_I0225	-	hypothetical protein
204	 39.79	0	270782..271447	+	221	209693838	-	VSAL_I0226	-	integral membrane protein
205	 41.82	0	272158..274962	+	934	209693839	polA	VSAL_I0227	-	DNA polymerase I
206	 39.26	0	275687..276361	-	224	209693840	engB	VSAL_I0228	-	probable gtp-binding protein EngB
207	 44.82	+1	276622..277239	+	205	209693841	-	VSAL_I0229	-	cytochrome c
208	 41.40	0	277381..278025	+	214	209693842	-	VSAL_I0230	-	hypothetical protein
209	 39.89	0	278025..278573	+	182	209693843	-	VSAL_I0231	-	hypothetical protein
210	 39.02	0	278576..279067	+	163	209693844	-	VSAL_I0232	-	hypothetical protein
211	 40.90	0	279179..280552	+	457	209693845	hemN	VSAL_I0233	-	oxygen-independent coproporphyrinogen III oxidase
212	 37.78	0	280769..281083	+	104	209693846	-	VSAL_I0234	-	transposase
213	 36.21	-1	281080..281427	+	115	209693847	-	VSAL_I0235	-	transposase
214	 39.72	0	281499..282986	+	495	209693848	-	VSAL_I0236	-	transposase
215	 41.76	0	283303..284334	-	343	209693849	-	VSAL_I0238	-	glycosyl tranferase
216	 38.06	0	284334..285116	-	260	209693850	waaE	VSAL_I0239	-	glucosyl transferase
217	 40.20	0	285116..286237	-	373	209693851	-	VSAL_I0240	-	lipopolysaccharide core biosynthesis glycosyl transferase protein
218	 36.74	0	286562..287266	+	234	209693852	wavC	VSAL_I0241	-	lipopolysaccharide core oligosaccharide biosynthesis protein WavC
219	 38.19	0	287299..289152	+	617	209693853	-	VSAL_I0242	-	membrane associated sulfatase
220	 39.93	0	289174..290265	+	363	209693854	rmlB	VSAL_I0243	-	dTDP-D-glucose-4,6-dehydratase
221	 38.42	0	290265..291149	+	294	209693855	rmlA	VSAL_I0244	-	glucose-1-phosphate thymidylyltransferase RmlA
222	 39.43	0	292059..292616	+	185	209693856	rmlC	VSAL_I0246	-	dTDP-4-dehydrorhamnose 3,5-epimerase
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.