version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1622 36.21 -1 1896603..1896950 + 115 209695256 - VSAL_I1779 - transposase 1623 39.78 0 1897021..1898508 + 495 209695257 - VSAL_I1780 - transposase 1624 41.34 0 1898601..1898987 - 128 209695258 - VSAL_I1781 - hypothetical protein 1625 40.37 0 1899190..1899843 - 217 209695259 - VSAL_I1782 - Metallo-beta-lactamase 1626 44.56 +1 1899903..1901024 - 373 209695260 - VSAL_I1783 - putative lipoprotein 1627 39.80 0 1901005..1902024 - 339 209695261 - VSAL_I1784 - putative lipoprotein 1628 43.20 +1 1902035..1903423 - 462 209695262 - VSAL_I1785 - hypothetical protein 1629 41.79 0 1903553..1904806 - 417 209695263 - VSAL_I1786 - putative iron-regulated protein 1630 37.33 0 1905014..1905613 - 199 209695264 ribA VSAL_I1787 - GTP cyclohydrolase-2 1631 43.54 +1 1905921..1907066 - 381 209695265 adhB VSAL_I1788 - alcohol dehydrogenase 2 1632 41.42 0 1907270..1907986 - 238 209695266 - VSAL_I1789 - hypothetical protein 1633 42.40 0 1907988..1911206 - 1072 209695267 - VSAL_I1790 - restriction enzyme 1634 43.54 +1 1912607..1914370 - 587 209695268 - VSAL_I1792 - N-6 adenine-specific DNA methylase 1635 35.21 -1 1914702..1915766 + 354 209695269 - VSAL_I1793 - hypothetical protein 1636 36.55 0 1916221..1916967 - 248 209695270 - VSAL_I1795 - hypothetical protein 1637 43.02 +1 1917737..1919119 + 460 209695271 - VSAL_I1796 - sodium/alanine symporter 1638 39.09 0 1919516..1921201 + 561 209695272 - VSAL_I1797 - mechanosensitive ion channel 1639 38.79 0 1921280..1921921 - 213 209695273 - VSAL_I1798 - amino acid transport protein, LysE type 1640 40.15 0 1922143..1922274 + 43 209695274 - VSAL_I1799 - hypothetical protein 1641 42.56 +1 1922402..1923886 + 494 209695275 - VSAL_I1800 - carboxypeptidase 1642 36.11 -1 1924100..1924351 + 83 209695276 hipB VSAL_I1801 - HTH-type transcriptional regulator HipB 1643 37.26 0 1924351..1925673 + 440 209695277 hipA VSAL_I1802 - transcriptional regulator, HipA-like 1644 37.58 0 1925836..1927200 - 454 209695278 - VSAL_I1803 - hypothetical protein 1645 37.92 0 1927204..1928316 - 370 209695279 - VSAL_I1804 - hypothetical protein 1646 38.74 0 1928432..1928653 - 73 209695280 - VSAL_I1805 - hypothetical protein 1647 40.52 0 1928797..1930368 - 523 209695281 - VSAL_I1806 - hypothetical protein 1648 40.41 0 1930948..1931625 + 225 209695282 - VSAL_I1807 - hypothetical protein 1649 42.29 0 1931745..1932872 + 375 209695283 - VSAL_I1808 - hypothetical protein 1650 37.78 0 1932956..1933270 + 104 209695284 - VSAL_I1809 - transposase 1651 36.21 -1 1933267..1933614 + 115 209695285 - VSAL_I1810 - transposase 1652 42.82 +1 1935733..1937103 - 456 209695286 - VSAL_I1813 - sodium/dicarboxylate symporter 1653 40.81 0 1937360..1938001 + 213 209695287 - VSAL_I1814 - thiopurine S-methyltransferase 1654 35.12 -1 1938151..1938876 - 241 209695288 - VSAL_I1815 - putative nucleotidyl transferase 1655 36.82 0 1938973..1939746 - 257 209695289 - VSAL_I1816 - membrane protein 1656 35.05 -1 1939747..1940967 - 406 209695290 - VSAL_I1817 - putative aminotransferase 1657 36.14 -1 1943870..1944973 + 367 209695291 - VSAL_I1819 - outer membrane protein A 1658 36.90 0 1944970..1947069 + 699 209695292 - VSAL_I1820 - putative lipoprotein 1659 38.02 0 1949064..1949618 - 184 209695293 - VSAL_I1823 - putative exonuclease 1660 37.13 0 1949687..1951135 - 482 209695294 - VSAL_I1824 - membrane associated receptor 1661 38.07 0 1951455..1952087 + 210 209695295 - VSAL_I1825 - hypothetical protein 1662 44.15 +1 1952087..1953907 + 606 209695296 - VSAL_I1826 - putative heat-shock chaperone protein 1663 43.17 +1 1954046..1956862 + 938 209695297 - VSAL_I1827 - putative chaperone heat-shock protein 1664 37.29 0 1956982..1957284 + 100 209695298 - VSAL_I1828 - hypothetical protein 1665 36.71 0 1957348..1957821 - 157 209695299 - VSAL_I1829 - hypothetical protein 1666 40.10 0 1958017..1959168 + 383 209695300 - VSAL_I1830 - hypothetical protein 1667 42.82 +1 1959321..1960079 - 252 209695301 udp VSAL_I1831 - uridine phosphorylase 1668 36.21 -1 1966663..1967010 - 115 209695302 - VSAL_I1834 - transposase 1669 40.36 0 1967437..1969158 - 573 209695303 cydC VSAL_I1836 - transport ATP-binding protein CydC 1670 40.83 0 1969151..1970923 - 590 209695304 cydD VSAL_I1837 - transport ATP-binding protein CydD 1671 43.89 +1 1971073..1972038 - 321 209695305 trxB VSAL_I1838 - thioredoxin reductase 1672 43.25 +1 1972198..1973316 - 372 209695306 aladh VSAL_I1839 - alanine dehydrogenase 1673 38.01 0 1973473..1973964 + 163 209695307 lrp VSAL_I1840 - leucine-responsive regulatory protein 1674 41.09 0 1974174..1977449 + 1091 209695308 - VSAL_I1841 - DNA translocase FtsK 1675 38.53 0 1977479..1978075 + 198 209695309 - VSAL_I1842 - outer-membrane lipoprotein carrier protein precursor 1676 41.87 0 1978120..1979466 + 448 209695310 - VSAL_I1843 - hypothetical protein 1677 43.20 +1 1979589..1980896 + 435 209695311 serS VSAL_I1844 - seryl-tRNA synthetase 1678 40.92 0 1981008..1981442 - 144 209695312 trxC VSAL_I1845 - thioredoxin 2 1679 41.36 0 1981576..1981899 - 107 209695313 - VSAL_I1846 - hypothetical protein 1680 40.23 0 1982083..1983387 + 434 209695314 gsk VSAL_I1847 - inosine-guanosine kinase 1681 40.53 0 1983456..1984331 - 291 209695315 - VSAL_I1848 - putative aldose 1-epimerase 1682 43.20 +1 1984513..1985505 - 330 209695316 gap VSAL_I1849 - glyceraldehydes-3-phosphate dehydrogenase 1683 38.77 0 1985842..1986246 + 134 209695317 - VSAL_I1850 - putative methionine sulfoxide reductase 1684 35.93 -1 1986310..1987194 - 294 209695318 - VSAL_I1851 - hypothetical protein 1685 36.84 0 1987276..1987560 + 94 209695319 - VSAL_I1852 - hypothetical protein 1686 38.00 0 1987705..1987854 + 49 209695320 - VSAL_I1853 - hypothetical protein 1687 35.34 -1 1987870..1988718 - 282 209695321 - VSAL_I1854 - putative ion transport protein 1688 41.67 0 1989295..1991946 + 883 209695322 adhE VSAL_I1855 - aldehyde-alcohol dehydrogenase 1689 36.90 0 1992080..1992751 - 223 209695323 - VSAL_I1856 - hypothetical protein 1690 41.42 0 1993015..1993521 - 168 209695324 - VSAL_I1857 - hypothetical protein 1691 44.10 +1 1993731..1994315 - 194 209695325 sodB VSAL_I1858 - superoxide dismutase [Fe] 1692 39.88 0 1994551..1994886 + 111 209695326 - VSAL_I1859 - putative glutaredoxin 1693 38.65 0 1994990..1996288 - 432 209695327 - VSAL_I1860 - putative response regulator 1694 41.69 0 1996459..1997787 - 442 209695328 - VSAL_I1861 - sodium/proton antiporter 1695 40.39 0 1997835..1998500 - 221 209695329 rnt VSAL_I1862 - ribonuclease T 1696 38.57 0 1998701..1999579 + 292 209695330 motY VSAL_I1863 - sodium-type flagellar protein MotY precursor 1697 37.47 0 1999618..2000052 - 144 209695331 - VSAL_I1864 - putative outer membrane protein 1698 41.49 0 2000172..2000588 - 138 209695332 gloA VSAL_I1865 - lactoylglutathione lyase 1699 39.62 0 2000625..2001260 - 211 209695333 nth VSAL_I1866 - endonuclease III 1700 40.17 0 2001278..2001964 - 228 209695334 rnfE VSAL_I1867 - electron transport complex protein RnfE 1701 41.07 0 2001964..2002596 - 210 209695335 rnfG VSAL_I1868 - electron transport complex protein RnfG 1702 40.53 0 2002600..2003655 - 351 209695336 rnfD VSAL_I1869 - electron transport complex protein RnfD 1703 42.58 +1 2003658..2005808 - 716 209695337 rnfC VSAL_I1870 - electron transport complex protein RnfC 1704 40.85 0 2005812..2006396 - 194 209695338 rnfB VSAL_I1871 - electron transport complex protein RnfB 1705 39.18 0 2006399..2006980 - 193 209695339 rnfA VSAL_I1872 - electron transport complex protein RnfA 1706 39.00 0 2007661..2009691 + 676 209695340 uvrB VSAL_I1873 - UvrABS system protein B (excinuclease ABC subunit B) 1707 39.93 0 2010023..2011432 + 469 209695341 luxO VSAL_I1874 - two component signal response regulator LuxO 1708 36.04 -1 2011444..2011776 + 110 209695342 luxU VSAL_I1875 - phosphorelay protein LuxU 1709 40.96 0 2011826..2012704 - 292 209695343 - VSAL_I1876 - hypothetical protein 1710 39.39 0 2013073..2014062 + 329 209695344 moaA VSAL_I1877 - molybdenum cofactor biosynthesis protein A 1711 40.00 0 2014075..2014554 + 159 209695345 moaC VSAL_I1878 - molybdenum cofactor biosynthesis protein C 1712 40.65 0 2014551..2014796 + 81 209695346 moaD VSAL_I1879 - molybdopterin-converting factor subunit 1 1713 42.06 0 2014798..2015244 + 148 209695347 moaE VSAL_I1880 - molybdopterin-converting factor subunit 2 1714 41.20 0 2015333..2016298 - 321 209695348 - VSAL_I1881 - hypothetical protein 1715 40.56 0 2016302..2017810 - 502 209695349 - VSAL_I1882 - membrane protein 1716 39.17 0 2017913..2018683 - 256 209695350 - VSAL_I1883 - putative lipoprotein 1717 41.03 0 2018763..2019737 - 324 209695351 - VSAL_I1884 - putative methyltransferase 1718 39.64 0 2019787..2020515 - 242 209695352 - VSAL_I1885 - putative methyltransferase 1719 42.85 +1 2021027..2022802 + 591 209695353 aspS VSAL_I1886 - aspartyl-tRNA synthetase 1720 43.87 +1 2022901..2023422 + 173 209695354 ruvC VSAL_I1887 - crossover junction endodeoxyribonuclease RuvC 1721 40.26 0 2023519..2024139 + 206 209695355 ruvA VSAL_I1888 - holliday junction ATP-dependent DNA helicase RuvA 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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