version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1601 37.93 0 1869462..1870244 + 260 209695235 hutD VSAL_I1756 - heme transporter protein HuvD, ATP-binding component 1602 44.35 +1 1870335..1870688 - 117 209695236 rplT VSAL_I1757 - 50S ribosomal protein L20 1603 40.51 0 1870730..1870924 - 64 209695237 rpmI VSAL_I1758 - 50S ribosomal subunit protein L35 1604 44.20 +1 1871032..1871583 - 183 209695238 infC VSAL_I1759 - translation initiation factor IF-3 1605 43.08 +1 1871587..1873515 - 642 209695239 thrS VSAL_I1760 - threonyl-tRNA synthetase 1606 37.88 0 1873744..1874490 - 248 209695240 - VSAL_I1761 - putative sporulation-control protein 1607 39.24 0 1874557..1875639 - 360 209695241 - VSAL_I1762 - putative peptidase 1608 33.96 -1 1875664..1875981 - 105 209695242 - VSAL_I1763 - hypothetical protein 1609 38.51 0 1876072..1877424 - 450 209695243 - VSAL_I1764 - putative heat shock protein 1610 39.72 0 1877488..1878051 - 187 209695244 - VSAL_I1765 - putative membrane-associated phosphoesterase 1611 36.02 -1 1878265..1878972 + 235 209695245 - VSAL_I1766 - hypothetical protein 1612 41.99 0 1879456..1882113 - 885 209695246 gyrA VSAL_I1767 - DNA gyrase subunit A 1613 39.94 0 1882401..1883126 + 241 209695247 ubiG VSAL_I1768 - 3-demethylubiquinone-9 3-methyltransferase 1614 40.23 0 1883610..1885886 + 758 209695248 nrdA VSAL_I1769 - ribonucleoside-diphosphate reductase 1 alpha chain 1615 37.21 0 1886055..1887188 + 377 209695249 nrdB VSAL_I1770 - ribonucleoside-diphosphate reductase 1 beta chain 1616 40.94 0 1889511..1889786 + 91 209695250 - VSAL_I1772 - putative ferredoxin 1617 41.93 0 1889844..1891076 - 410 209695251 - VSAL_I1773 - putative molybdopterin binding protein 1618 38.19 0 1891303..1892475 + 390 209695252 tyrP VSAL_I1774 - tyrosine-specific transport protein (tyrosine permease) 1619 40.77 0 1892637..1893551 + 304 209695253 - VSAL_I1775 - hypothetical protein 1620 39.14 0 1893600..1894925 - 441 209695254 - VSAL_I1776 - transposase 1621 35.94 -1 1895311..1896192 - 293 209695255 - VSAL_I1777 - transposase 1622 36.21 -1 1896603..1896950 + 115 209695256 - VSAL_I1779 - transposase 1623 39.78 0 1897021..1898508 + 495 209695257 - VSAL_I1780 - transposase 1624 41.34 0 1898601..1898987 - 128 209695258 - VSAL_I1781 - hypothetical protein 1625 40.37 0 1899190..1899843 - 217 209695259 - VSAL_I1782 - Metallo-beta-lactamase 1626 44.56 +1 1899903..1901024 - 373 209695260 - VSAL_I1783 - putative lipoprotein 1627 39.80 0 1901005..1902024 - 339 209695261 - VSAL_I1784 - putative lipoprotein 1628 43.20 +1 1902035..1903423 - 462 209695262 - VSAL_I1785 - hypothetical protein 1629 41.79 0 1903553..1904806 - 417 209695263 - VSAL_I1786 - putative iron-regulated protein 1630 37.33 0 1905014..1905613 - 199 209695264 ribA VSAL_I1787 - GTP cyclohydrolase-2 1631 43.54 +1 1905921..1907066 - 381 209695265 adhB VSAL_I1788 - alcohol dehydrogenase 2 1632 41.42 0 1907270..1907986 - 238 209695266 - VSAL_I1789 - hypothetical protein 1633 42.40 0 1907988..1911206 - 1072 209695267 - VSAL_I1790 - restriction enzyme 1634 43.54 +1 1912607..1914370 - 587 209695268 - VSAL_I1792 - N-6 adenine-specific DNA methylase 1635 35.21 -1 1914702..1915766 + 354 209695269 - VSAL_I1793 - hypothetical protein 1636 36.55 0 1916221..1916967 - 248 209695270 - VSAL_I1795 - hypothetical protein 1637 43.02 +1 1917737..1919119 + 460 209695271 - VSAL_I1796 - sodium/alanine symporter 1638 39.09 0 1919516..1921201 + 561 209695272 - VSAL_I1797 - mechanosensitive ion channel 1639 38.79 0 1921280..1921921 - 213 209695273 - VSAL_I1798 - amino acid transport protein, LysE type 1640 40.15 0 1922143..1922274 + 43 209695274 - VSAL_I1799 - hypothetical protein 1641 42.56 +1 1922402..1923886 + 494 209695275 - VSAL_I1800 - carboxypeptidase 1642 36.11 -1 1924100..1924351 + 83 209695276 hipB VSAL_I1801 - HTH-type transcriptional regulator HipB 1643 37.26 0 1924351..1925673 + 440 209695277 hipA VSAL_I1802 - transcriptional regulator, HipA-like 1644 37.58 0 1925836..1927200 - 454 209695278 - VSAL_I1803 - hypothetical protein 1645 37.92 0 1927204..1928316 - 370 209695279 - VSAL_I1804 - hypothetical protein 1646 38.74 0 1928432..1928653 - 73 209695280 - VSAL_I1805 - hypothetical protein 1647 40.52 0 1928797..1930368 - 523 209695281 - VSAL_I1806 - hypothetical protein 1648 40.41 0 1930948..1931625 + 225 209695282 - VSAL_I1807 - hypothetical protein 1649 42.29 0 1931745..1932872 + 375 209695283 - VSAL_I1808 - hypothetical protein 1650 37.78 0 1932956..1933270 + 104 209695284 - VSAL_I1809 - transposase 1651 36.21 -1 1933267..1933614 + 115 209695285 - VSAL_I1810 - transposase 1652 42.82 +1 1935733..1937103 - 456 209695286 - VSAL_I1813 - sodium/dicarboxylate symporter 1653 40.81 0 1937360..1938001 + 213 209695287 - VSAL_I1814 - thiopurine S-methyltransferase 1654 35.12 -1 1938151..1938876 - 241 209695288 - VSAL_I1815 - putative nucleotidyl transferase 1655 36.82 0 1938973..1939746 - 257 209695289 - VSAL_I1816 - membrane protein 1656 35.05 -1 1939747..1940967 - 406 209695290 - VSAL_I1817 - putative aminotransferase 1657 36.14 -1 1943870..1944973 + 367 209695291 - VSAL_I1819 - outer membrane protein A 1658 36.90 0 1944970..1947069 + 699 209695292 - VSAL_I1820 - putative lipoprotein 1659 38.02 0 1949064..1949618 - 184 209695293 - VSAL_I1823 - putative exonuclease 1660 37.13 0 1949687..1951135 - 482 209695294 - VSAL_I1824 - membrane associated receptor 1661 38.07 0 1951455..1952087 + 210 209695295 - VSAL_I1825 - hypothetical protein 1662 44.15 +1 1952087..1953907 + 606 209695296 - VSAL_I1826 - putative heat-shock chaperone protein 1663 43.17 +1 1954046..1956862 + 938 209695297 - VSAL_I1827 - putative chaperone heat-shock protein 1664 37.29 0 1956982..1957284 + 100 209695298 - VSAL_I1828 - hypothetical protein 1665 36.71 0 1957348..1957821 - 157 209695299 - VSAL_I1829 - hypothetical protein 1666 40.10 0 1958017..1959168 + 383 209695300 - VSAL_I1830 - hypothetical protein 1667 42.82 +1 1959321..1960079 - 252 209695301 udp VSAL_I1831 - uridine phosphorylase 1668 36.21 -1 1966663..1967010 - 115 209695302 - VSAL_I1834 - transposase 1669 40.36 0 1967437..1969158 - 573 209695303 cydC VSAL_I1836 - transport ATP-binding protein CydC 1670 40.83 0 1969151..1970923 - 590 209695304 cydD VSAL_I1837 - transport ATP-binding protein CydD 1671 43.89 +1 1971073..1972038 - 321 209695305 trxB VSAL_I1838 - thioredoxin reductase 1672 43.25 +1 1972198..1973316 - 372 209695306 aladh VSAL_I1839 - alanine dehydrogenase 1673 38.01 0 1973473..1973964 + 163 209695307 lrp VSAL_I1840 - leucine-responsive regulatory protein 1674 41.09 0 1974174..1977449 + 1091 209695308 - VSAL_I1841 - DNA translocase FtsK 1675 38.53 0 1977479..1978075 + 198 209695309 - VSAL_I1842 - outer-membrane lipoprotein carrier protein precursor 1676 41.87 0 1978120..1979466 + 448 209695310 - VSAL_I1843 - hypothetical protein 1677 43.20 +1 1979589..1980896 + 435 209695311 serS VSAL_I1844 - seryl-tRNA synthetase 1678 40.92 0 1981008..1981442 - 144 209695312 trxC VSAL_I1845 - thioredoxin 2 1679 41.36 0 1981576..1981899 - 107 209695313 - VSAL_I1846 - hypothetical protein 1680 40.23 0 1982083..1983387 + 434 209695314 gsk VSAL_I1847 - inosine-guanosine kinase 1681 40.53 0 1983456..1984331 - 291 209695315 - VSAL_I1848 - putative aldose 1-epimerase 1682 43.20 +1 1984513..1985505 - 330 209695316 gap VSAL_I1849 - glyceraldehydes-3-phosphate dehydrogenase 1683 38.77 0 1985842..1986246 + 134 209695317 - VSAL_I1850 - putative methionine sulfoxide reductase 1684 35.93 -1 1986310..1987194 - 294 209695318 - VSAL_I1851 - hypothetical protein 1685 36.84 0 1987276..1987560 + 94 209695319 - VSAL_I1852 - hypothetical protein 1686 38.00 0 1987705..1987854 + 49 209695320 - VSAL_I1853 - hypothetical protein 1687 35.34 -1 1987870..1988718 - 282 209695321 - VSAL_I1854 - putative ion transport protein 1688 41.67 0 1989295..1991946 + 883 209695322 adhE VSAL_I1855 - aldehyde-alcohol dehydrogenase 1689 36.90 0 1992080..1992751 - 223 209695323 - VSAL_I1856 - hypothetical protein 1690 41.42 0 1993015..1993521 - 168 209695324 - VSAL_I1857 - hypothetical protein 1691 44.10 +1 1993731..1994315 - 194 209695325 sodB VSAL_I1858 - superoxide dismutase [Fe] 1692 39.88 0 1994551..1994886 + 111 209695326 - VSAL_I1859 - putative glutaredoxin 1693 38.65 0 1994990..1996288 - 432 209695327 - VSAL_I1860 - putative response regulator 1694 41.69 0 1996459..1997787 - 442 209695328 - VSAL_I1861 - sodium/proton antiporter 1695 40.39 0 1997835..1998500 - 221 209695329 rnt VSAL_I1862 - ribonuclease T 1696 38.57 0 1998701..1999579 + 292 209695330 motY VSAL_I1863 - sodium-type flagellar protein MotY precursor 1697 37.47 0 1999618..2000052 - 144 209695331 - VSAL_I1864 - putative outer membrane protein 1698 41.49 0 2000172..2000588 - 138 209695332 gloA VSAL_I1865 - lactoylglutathione lyase 1699 39.62 0 2000625..2001260 - 211 209695333 nth VSAL_I1866 - endonuclease III 1700 40.17 0 2001278..2001964 - 228 209695334 rnfE VSAL_I1867 - electron transport complex protein RnfE 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0