IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1593	 39.65	0	1860781..1862268	+	495	209695227	-	VSAL_I1747	-	transposase
1594	 35.78	-1	1863104..1863634	-	176	209695228	huvZ	VSAL_I1748	-	heme uptake and utilization protein HuvZ
1595	 33.73	-1	1863660..1864166	-	168	209695229	huvX	VSAL_I1749	-	heme uptake and utilization protein HuvX
1596	 38.70	0	1864187..1865509	-	440	209695230	phuW	VSAL_I1750	-	putative coproporphyrinogen oxidase PhuW
1597	 39.21	0	1866457..1867137	+	226	209695231	exbB1	VSAL_I1752	-	TonB system transport protein ExbB1
1598	 32.63	-2	1867137..1867562	+	141	209695232	exbD1	VSAL_I1753	-	TonB system transport protein ExbD1
1599	 38.14	0	1867552..1868424	+	290	209695233	huvB	VSAL_I1754	-	heme transporter protein HuvB, putative periplasmic binding protein
1600	 39.50	0	1868428..1869465	+	345	209695234	huvC	VSAL_I1755	-	heme transporter protein HuvC, transmembrane permease component
1601	 37.93	0	1869462..1870244	+	260	209695235	hutD	VSAL_I1756	-	heme transporter protein HuvD, ATP-binding component
1602	 44.35	+1	1870335..1870688	-	117	209695236	rplT	VSAL_I1757	-	50S ribosomal protein L20
1603	 40.51	0	1870730..1870924	-	64	209695237	rpmI	VSAL_I1758	-	50S ribosomal subunit protein L35
1604	 44.20	+1	1871032..1871583	-	183	209695238	infC	VSAL_I1759	-	translation initiation factor IF-3
1605	 43.08	+1	1871587..1873515	-	642	209695239	thrS	VSAL_I1760	-	threonyl-tRNA synthetase
1606	 37.88	0	1873744..1874490	-	248	209695240	-	VSAL_I1761	-	putative sporulation-control protein
1607	 39.24	0	1874557..1875639	-	360	209695241	-	VSAL_I1762	-	putative peptidase
1608	 33.96	-1	1875664..1875981	-	105	209695242	-	VSAL_I1763	-	hypothetical protein
1609	 38.51	0	1876072..1877424	-	450	209695243	-	VSAL_I1764	-	putative heat shock protein
1610	 39.72	0	1877488..1878051	-	187	209695244	-	VSAL_I1765	-	putative membrane-associated phosphoesterase
1611	 36.02	-1	1878265..1878972	+	235	209695245	-	VSAL_I1766	-	hypothetical protein
1612	 41.99	0	1879456..1882113	-	885	209695246	gyrA	VSAL_I1767	-	DNA gyrase subunit A
1613	 39.94	0	1882401..1883126	+	241	209695247	ubiG	VSAL_I1768	-	3-demethylubiquinone-9 3-methyltransferase
1614	 40.23	0	1883610..1885886	+	758	209695248	nrdA	VSAL_I1769	-	ribonucleoside-diphosphate reductase 1 alpha chain
1615	 37.21	0	1886055..1887188	+	377	209695249	nrdB	VSAL_I1770	-	ribonucleoside-diphosphate reductase 1 beta chain
1616	 40.94	0	1889511..1889786	+	91	209695250	-	VSAL_I1772	-	putative ferredoxin
1617	 41.93	0	1889844..1891076	-	410	209695251	-	VSAL_I1773	-	putative molybdopterin binding protein
1618	 38.19	0	1891303..1892475	+	390	209695252	tyrP	VSAL_I1774	-	tyrosine-specific transport protein (tyrosine permease)
1619	 40.77	0	1892637..1893551	+	304	209695253	-	VSAL_I1775	-	hypothetical protein
1620	 39.14	0	1893600..1894925	-	441	209695254	-	VSAL_I1776	-	transposase
1621	 35.94	-1	1895311..1896192	-	293	209695255	-	VSAL_I1777	-	transposase
1622	 36.21	-1	1896603..1896950	+	115	209695256	-	VSAL_I1779	-	transposase
1623	 39.78	0	1897021..1898508	+	495	209695257	-	VSAL_I1780	-	transposase
1624	 41.34	0	1898601..1898987	-	128	209695258	-	VSAL_I1781	-	hypothetical protein
1625	 40.37	0	1899190..1899843	-	217	209695259	-	VSAL_I1782	-	Metallo-beta-lactamase
1626	 44.56	+1	1899903..1901024	-	373	209695260	-	VSAL_I1783	-	putative lipoprotein
1627	 39.80	0	1901005..1902024	-	339	209695261	-	VSAL_I1784	-	putative lipoprotein
1628	 43.20	+1	1902035..1903423	-	462	209695262	-	VSAL_I1785	-	hypothetical protein
1629	 41.79	0	1903553..1904806	-	417	209695263	-	VSAL_I1786	-	putative iron-regulated protein
1630	 37.33	0	1905014..1905613	-	199	209695264	ribA	VSAL_I1787	-	GTP cyclohydrolase-2
1631	 43.54	+1	1905921..1907066	-	381	209695265	adhB	VSAL_I1788	-	alcohol dehydrogenase 2
1632	 41.42	0	1907270..1907986	-	238	209695266	-	VSAL_I1789	-	hypothetical protein
1633	 42.40	0	1907988..1911206	-	1072	209695267	-	VSAL_I1790	-	restriction enzyme
1634	 43.54	+1	1912607..1914370	-	587	209695268	-	VSAL_I1792	-	N-6 adenine-specific DNA methylase
1635	 35.21	-1	1914702..1915766	+	354	209695269	-	VSAL_I1793	-	hypothetical protein
1636	 36.55	0	1916221..1916967	-	248	209695270	-	VSAL_I1795	-	hypothetical protein
1637	 43.02	+1	1917737..1919119	+	460	209695271	-	VSAL_I1796	-	sodium/alanine symporter
1638	 39.09	0	1919516..1921201	+	561	209695272	-	VSAL_I1797	-	mechanosensitive ion channel
1639	 38.79	0	1921280..1921921	-	213	209695273	-	VSAL_I1798	-	amino acid transport protein, LysE type
1640	 40.15	0	1922143..1922274	+	43	209695274	-	VSAL_I1799	-	hypothetical protein
1641	 42.56	+1	1922402..1923886	+	494	209695275	-	VSAL_I1800	-	carboxypeptidase
1642	 36.11	-1	1924100..1924351	+	83	209695276	hipB	VSAL_I1801	-	HTH-type transcriptional regulator HipB
1643	 37.26	0	1924351..1925673	+	440	209695277	hipA	VSAL_I1802	-	transcriptional regulator, HipA-like
1644	 37.58	0	1925836..1927200	-	454	209695278	-	VSAL_I1803	-	hypothetical protein
1645	 37.92	0	1927204..1928316	-	370	209695279	-	VSAL_I1804	-	hypothetical protein
1646	 38.74	0	1928432..1928653	-	73	209695280	-	VSAL_I1805	-	hypothetical protein
1647	 40.52	0	1928797..1930368	-	523	209695281	-	VSAL_I1806	-	hypothetical protein
1648	 40.41	0	1930948..1931625	+	225	209695282	-	VSAL_I1807	-	hypothetical protein
1649	 42.29	0	1931745..1932872	+	375	209695283	-	VSAL_I1808	-	hypothetical protein
1650	 37.78	0	1932956..1933270	+	104	209695284	-	VSAL_I1809	-	transposase
1651	 36.21	-1	1933267..1933614	+	115	209695285	-	VSAL_I1810	-	transposase
1652	 42.82	+1	1935733..1937103	-	456	209695286	-	VSAL_I1813	-	sodium/dicarboxylate symporter
1653	 40.81	0	1937360..1938001	+	213	209695287	-	VSAL_I1814	-	thiopurine S-methyltransferase
1654	 35.12	-1	1938151..1938876	-	241	209695288	-	VSAL_I1815	-	putative nucleotidyl transferase
1655	 36.82	0	1938973..1939746	-	257	209695289	-	VSAL_I1816	-	membrane protein
1656	 35.05	-1	1939747..1940967	-	406	209695290	-	VSAL_I1817	-	putative aminotransferase
1657	 36.14	-1	1943870..1944973	+	367	209695291	-	VSAL_I1819	-	outer membrane protein A
1658	 36.90	0	1944970..1947069	+	699	209695292	-	VSAL_I1820	-	putative lipoprotein
1659	 38.02	0	1949064..1949618	-	184	209695293	-	VSAL_I1823	-	putative exonuclease
1660	 37.13	0	1949687..1951135	-	482	209695294	-	VSAL_I1824	-	membrane associated receptor
1661	 38.07	0	1951455..1952087	+	210	209695295	-	VSAL_I1825	-	hypothetical protein
1662	 44.15	+1	1952087..1953907	+	606	209695296	-	VSAL_I1826	-	putative heat-shock chaperone protein
1663	 43.17	+1	1954046..1956862	+	938	209695297	-	VSAL_I1827	-	putative chaperone heat-shock protein
1664	 37.29	0	1956982..1957284	+	100	209695298	-	VSAL_I1828	-	hypothetical protein
1665	 36.71	0	1957348..1957821	-	157	209695299	-	VSAL_I1829	-	hypothetical protein
1666	 40.10	0	1958017..1959168	+	383	209695300	-	VSAL_I1830	-	hypothetical protein
1667	 42.82	+1	1959321..1960079	-	252	209695301	udp	VSAL_I1831	-	uridine phosphorylase
1668	 36.21	-1	1966663..1967010	-	115	209695302	-	VSAL_I1834	-	transposase
1669	 40.36	0	1967437..1969158	-	573	209695303	cydC	VSAL_I1836	-	transport ATP-binding protein CydC
1670	 40.83	0	1969151..1970923	-	590	209695304	cydD	VSAL_I1837	-	transport ATP-binding protein CydD
1671	 43.89	+1	1971073..1972038	-	321	209695305	trxB	VSAL_I1838	-	thioredoxin reductase
1672	 43.25	+1	1972198..1973316	-	372	209695306	aladh	VSAL_I1839	-	alanine dehydrogenase
1673	 38.01	0	1973473..1973964	+	163	209695307	lrp	VSAL_I1840	-	leucine-responsive regulatory protein
1674	 41.09	0	1974174..1977449	+	1091	209695308	-	VSAL_I1841	-	DNA translocase FtsK
1675	 38.53	0	1977479..1978075	+	198	209695309	-	VSAL_I1842	-	outer-membrane lipoprotein carrier protein precursor
1676	 41.87	0	1978120..1979466	+	448	209695310	-	VSAL_I1843	-	hypothetical protein
1677	 43.20	+1	1979589..1980896	+	435	209695311	serS	VSAL_I1844	-	seryl-tRNA synthetase
1678	 40.92	0	1981008..1981442	-	144	209695312	trxC	VSAL_I1845	-	thioredoxin 2
1679	 41.36	0	1981576..1981899	-	107	209695313	-	VSAL_I1846	-	hypothetical protein
1680	 40.23	0	1982083..1983387	+	434	209695314	gsk	VSAL_I1847	-	inosine-guanosine kinase
1681	 40.53	0	1983456..1984331	-	291	209695315	-	VSAL_I1848	-	putative aldose 1-epimerase
1682	 43.20	+1	1984513..1985505	-	330	209695316	gap	VSAL_I1849	-	glyceraldehydes-3-phosphate dehydrogenase
1683	 38.77	0	1985842..1986246	+	134	209695317	-	VSAL_I1850	-	putative methionine sulfoxide reductase
1684	 35.93	-1	1986310..1987194	-	294	209695318	-	VSAL_I1851	-	hypothetical protein
1685	 36.84	0	1987276..1987560	+	94	209695319	-	VSAL_I1852	-	hypothetical protein
1686	 38.00	0	1987705..1987854	+	49	209695320	-	VSAL_I1853	-	hypothetical protein
1687	 35.34	-1	1987870..1988718	-	282	209695321	-	VSAL_I1854	-	putative ion transport protein
1688	 41.67	0	1989295..1991946	+	883	209695322	adhE	VSAL_I1855	-	aldehyde-alcohol dehydrogenase
1689	 36.90	0	1992080..1992751	-	223	209695323	-	VSAL_I1856	-	hypothetical protein
1690	 41.42	0	1993015..1993521	-	168	209695324	-	VSAL_I1857	-	hypothetical protein
1691	 44.10	+1	1993731..1994315	-	194	209695325	sodB	VSAL_I1858	-	superoxide dismutase [Fe]
1692	 39.88	0	1994551..1994886	+	111	209695326	-	VSAL_I1859	-	putative glutaredoxin
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.