version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1565 40.22 0 1806799..1807989 + 396 209695199 - VSAL_I1709 - hypothetical protein 1566 36.47 0 1821513..1821863 + 116 209695200 - VSAL_I1711 - hypothetical protein 1567 40.60 0 1821978..1823036 - 352 209695201 glpQ VSAL_I1712 - glycerophosphoryl diester phosphodiesterase precursor 1568 42.70 +1 1823160..1824611 - 483 209695202 glpT VSAL_I1713 - glycerol-3-phosphate transporter 1569 37.78 0 1824758..1825072 + 104 209695203 - VSAL_I1714 - transposase 1570 35.92 -1 1825069..1825416 + 115 209695204 - VSAL_I1715 - transposase 1571 34.62 -1 1827460..1828080 - 206 209695205 - VSAL_I1718 - hypothetical protein 1572 41.32 0 1829028..1830104 + 358 209695206 - VSAL_I1720 - transposase 1573 38.33 0 1830387..1831628 - 413 209695207 int VSAL_I1721 - phage integrase 1574 39.60 0 1832987..1833943 - 318 209695208 - VSAL_I1723 - transposase 1575 38.08 0 1834851..1835756 - 301 209695209 - VSAL_I1724 - hypothetical protein 1576 36.65 0 1835774..1837129 + 451 209695210 - VSAL_I1725 - hypothetical protein 1577 38.64 0 1837282..1838166 - 294 209695211 - VSAL_I1726 - PEP-utilising enzyme 1578 41.22 0 1838388..1839440 + 350 209695212 aroH VSAL_I1727 - phospho-2-dehydro-3-deoxyheptonate aldolase,Trp-sensitiv 1579 38.72 0 1839456..1839938 + 160 209695213 - VSAL_I1728 - hypothetical protein 1580 39.00 0 1840008..1841789 - 593 209695214 - VSAL_I1729 - oligopeptidase F 1581 36.39 0 1841899..1842912 - 337 209695215 - VSAL_I1730 - succinylglutamate desuccinylase 1582 42.76 +1 1843115..1843411 - 98 209695216 ihfA VSAL_I1731 - integration host factor alpha-subunit (IHF-alpha) 1583 45.14 +1 1843935..1846322 - 795 209695217 pheT VSAL_I1732 - phenylalanyl-tRNA synthetase beta chain 1584 44.21 +1 1846340..1847323 - 327 209695218 pheS VSAL_I1733 - phenylalanyl-tRNA synthetase alpha chain 1585 35.70 -1 1850439..1850861 + 140 209695219 - VSAL_I1736 - transposase 1586 34.04 -1 1850879..1851445 + 188 209695220 - VSAL_I1737 - transposase 1587 33.47 -1 1852072..1852803 - 243 209695221 - VSAL_I1739 - hypothetical protein 1588 32.31 -2 1852833..1853519 - 228 209695222 - VSAL_I1740 - hypothetical protein 1589 31.14 -2 1853551..1854279 - 242 209695223 - VSAL_I1741 - membrane protein 1590 38.83 0 1857562..1858416 - 284 209695224 - VSAL_I1743 - hypothetical protein 1591 37.78 0 1860051..1860365 + 104 209695225 - VSAL_I1745 - transposase 1592 36.21 -1 1860362..1860709 + 115 209695226 - VSAL_I1746 - transposase 1593 39.65 0 1860781..1862268 + 495 209695227 - VSAL_I1747 - transposase 1594 35.78 -1 1863104..1863634 - 176 209695228 huvZ VSAL_I1748 - heme uptake and utilization protein HuvZ 1595 33.73 -1 1863660..1864166 - 168 209695229 huvX VSAL_I1749 - heme uptake and utilization protein HuvX 1596 38.70 0 1864187..1865509 - 440 209695230 phuW VSAL_I1750 - putative coproporphyrinogen oxidase PhuW 1597 39.21 0 1866457..1867137 + 226 209695231 exbB1 VSAL_I1752 - TonB system transport protein ExbB1 1598 32.63 -2 1867137..1867562 + 141 209695232 exbD1 VSAL_I1753 - TonB system transport protein ExbD1 1599 38.14 0 1867552..1868424 + 290 209695233 huvB VSAL_I1754 - heme transporter protein HuvB, putative periplasmic binding protein 1600 39.50 0 1868428..1869465 + 345 209695234 huvC VSAL_I1755 - heme transporter protein HuvC, transmembrane permease component 1601 37.93 0 1869462..1870244 + 260 209695235 hutD VSAL_I1756 - heme transporter protein HuvD, ATP-binding component 1602 44.35 +1 1870335..1870688 - 117 209695236 rplT VSAL_I1757 - 50S ribosomal protein L20 1603 40.51 0 1870730..1870924 - 64 209695237 rpmI VSAL_I1758 - 50S ribosomal subunit protein L35 1604 44.20 +1 1871032..1871583 - 183 209695238 infC VSAL_I1759 - translation initiation factor IF-3 1605 43.08 +1 1871587..1873515 - 642 209695239 thrS VSAL_I1760 - threonyl-tRNA synthetase 1606 37.88 0 1873744..1874490 - 248 209695240 - VSAL_I1761 - putative sporulation-control protein 1607 39.24 0 1874557..1875639 - 360 209695241 - VSAL_I1762 - putative peptidase 1608 33.96 -1 1875664..1875981 - 105 209695242 - VSAL_I1763 - hypothetical protein 1609 38.51 0 1876072..1877424 - 450 209695243 - VSAL_I1764 - putative heat shock protein 1610 39.72 0 1877488..1878051 - 187 209695244 - VSAL_I1765 - putative membrane-associated phosphoesterase 1611 36.02 -1 1878265..1878972 + 235 209695245 - VSAL_I1766 - hypothetical protein 1612 41.99 0 1879456..1882113 - 885 209695246 gyrA VSAL_I1767 - DNA gyrase subunit A 1613 39.94 0 1882401..1883126 + 241 209695247 ubiG VSAL_I1768 - 3-demethylubiquinone-9 3-methyltransferase 1614 40.23 0 1883610..1885886 + 758 209695248 nrdA VSAL_I1769 - ribonucleoside-diphosphate reductase 1 alpha chain 1615 37.21 0 1886055..1887188 + 377 209695249 nrdB VSAL_I1770 - ribonucleoside-diphosphate reductase 1 beta chain 1616 40.94 0 1889511..1889786 + 91 209695250 - VSAL_I1772 - putative ferredoxin 1617 41.93 0 1889844..1891076 - 410 209695251 - VSAL_I1773 - putative molybdopterin binding protein 1618 38.19 0 1891303..1892475 + 390 209695252 tyrP VSAL_I1774 - tyrosine-specific transport protein (tyrosine permease) 1619 40.77 0 1892637..1893551 + 304 209695253 - VSAL_I1775 - hypothetical protein 1620 39.14 0 1893600..1894925 - 441 209695254 - VSAL_I1776 - transposase 1621 35.94 -1 1895311..1896192 - 293 209695255 - VSAL_I1777 - transposase 1622 36.21 -1 1896603..1896950 + 115 209695256 - VSAL_I1779 - transposase 1623 39.78 0 1897021..1898508 + 495 209695257 - VSAL_I1780 - transposase 1624 41.34 0 1898601..1898987 - 128 209695258 - VSAL_I1781 - hypothetical protein 1625 40.37 0 1899190..1899843 - 217 209695259 - VSAL_I1782 - Metallo-beta-lactamase 1626 44.56 +1 1899903..1901024 - 373 209695260 - VSAL_I1783 - putative lipoprotein 1627 39.80 0 1901005..1902024 - 339 209695261 - VSAL_I1784 - putative lipoprotein 1628 43.20 +1 1902035..1903423 - 462 209695262 - VSAL_I1785 - hypothetical protein 1629 41.79 0 1903553..1904806 - 417 209695263 - VSAL_I1786 - putative iron-regulated protein 1630 37.33 0 1905014..1905613 - 199 209695264 ribA VSAL_I1787 - GTP cyclohydrolase-2 1631 43.54 +1 1905921..1907066 - 381 209695265 adhB VSAL_I1788 - alcohol dehydrogenase 2 1632 41.42 0 1907270..1907986 - 238 209695266 - VSAL_I1789 - hypothetical protein 1633 42.40 0 1907988..1911206 - 1072 209695267 - VSAL_I1790 - restriction enzyme 1634 43.54 +1 1912607..1914370 - 587 209695268 - VSAL_I1792 - N-6 adenine-specific DNA methylase 1635 35.21 -1 1914702..1915766 + 354 209695269 - VSAL_I1793 - hypothetical protein 1636 36.55 0 1916221..1916967 - 248 209695270 - VSAL_I1795 - hypothetical protein 1637 43.02 +1 1917737..1919119 + 460 209695271 - VSAL_I1796 - sodium/alanine symporter 1638 39.09 0 1919516..1921201 + 561 209695272 - VSAL_I1797 - mechanosensitive ion channel 1639 38.79 0 1921280..1921921 - 213 209695273 - VSAL_I1798 - amino acid transport protein, LysE type 1640 40.15 0 1922143..1922274 + 43 209695274 - VSAL_I1799 - hypothetical protein 1641 42.56 +1 1922402..1923886 + 494 209695275 - VSAL_I1800 - carboxypeptidase 1642 36.11 -1 1924100..1924351 + 83 209695276 hipB VSAL_I1801 - HTH-type transcriptional regulator HipB 1643 37.26 0 1924351..1925673 + 440 209695277 hipA VSAL_I1802 - transcriptional regulator, HipA-like 1644 37.58 0 1925836..1927200 - 454 209695278 - VSAL_I1803 - hypothetical protein 1645 37.92 0 1927204..1928316 - 370 209695279 - VSAL_I1804 - hypothetical protein 1646 38.74 0 1928432..1928653 - 73 209695280 - VSAL_I1805 - hypothetical protein 1647 40.52 0 1928797..1930368 - 523 209695281 - VSAL_I1806 - hypothetical protein 1648 40.41 0 1930948..1931625 + 225 209695282 - VSAL_I1807 - hypothetical protein 1649 42.29 0 1931745..1932872 + 375 209695283 - VSAL_I1808 - hypothetical protein 1650 37.78 0 1932956..1933270 + 104 209695284 - VSAL_I1809 - transposase 1651 36.21 -1 1933267..1933614 + 115 209695285 - VSAL_I1810 - transposase 1652 42.82 +1 1935733..1937103 - 456 209695286 - VSAL_I1813 - sodium/dicarboxylate symporter 1653 40.81 0 1937360..1938001 + 213 209695287 - VSAL_I1814 - thiopurine S-methyltransferase 1654 35.12 -1 1938151..1938876 - 241 209695288 - VSAL_I1815 - putative nucleotidyl transferase 1655 36.82 0 1938973..1939746 - 257 209695289 - VSAL_I1816 - membrane protein 1656 35.05 -1 1939747..1940967 - 406 209695290 - VSAL_I1817 - putative aminotransferase 1657 36.14 -1 1943870..1944973 + 367 209695291 - VSAL_I1819 - outer membrane protein A 1658 36.90 0 1944970..1947069 + 699 209695292 - VSAL_I1820 - putative lipoprotein 1659 38.02 0 1949064..1949618 - 184 209695293 - VSAL_I1823 - putative exonuclease 1660 37.13 0 1949687..1951135 - 482 209695294 - VSAL_I1824 - membrane associated receptor 1661 38.07 0 1951455..1952087 + 210 209695295 - VSAL_I1825 - hypothetical protein 1662 44.15 +1 1952087..1953907 + 606 209695296 - VSAL_I1826 - putative heat-shock chaperone protein 1663 43.17 +1 1954046..1956862 + 938 209695297 - VSAL_I1827 - putative chaperone heat-shock protein 1664 37.29 0 1956982..1957284 + 100 209695298 - VSAL_I1828 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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