version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 109 43.36 +1 154286..155641 - 451 209693743 gor VSAL_I0120 - glutathione reductase 110 41.07 0 155854..156693 - 279 209693744 - VSAL_I0121 - hypothetical protein 111 43.42 +1 156846..158888 + 680 209693745 prlC VSAL_I0122 - oligopeptidase A 112 39.65 0 158962..160401 - 479 209693746 - VSAL_I0123 - putative exported peptidase 113 37.78 0 160523..160837 - 104 209693747 cyaY VSAL_I0124 - protein CyaY 114 42.82 +1 161114..162367 + 417 209693748 lysA VSAL_I0125 - diaminopimelate decarboxylase 115 42.60 +1 162449..163279 + 276 209693749 dapF VSAL_I0126 - diaminopimelate epimerase 116 39.46 0 163276..163977 + 233 209693750 - VSAL_I0127 - hypothetical protein 117 42.11 0 163970..164881 + 303 209693751 xerC VSAL_I0128 - tyrosine recombinase XerC 118 37.78 0 165050..165364 + 104 209693752 - VSAL_I0129 - transposase 119 40.47 0 165725..166915 - 396 209693753 - VSAL_I0131 - transposase 120 39.42 0 167270..167860 + 196 209693754 - VSAL_I0132 - putative lipoprotein 121 37.33 0 167877..169328 + 483 209693755 - VSAL_I0133 - hypothetical protein 122 39.92 0 169900..171447 + 515 209693756 - VSAL_I0134 - L-2,4-diaminobutyrate decarboxylase 123 39.73 0 171464..172792 + 442 209693757 iucD VSAL_I0135 - siderophore biosynthetis protein 124 39.67 0 172803..175262 + 819 209693758 iucC VSAL_I0136 - siderophore biosynthesis protein 125 40.58 0 175286..177451 + 721 209693759 - VSAL_I0137 - TonB-dependent iron-siderophore receptor precursor 126 43.32 +1 177570..178520 + 316 209693760 - VSAL_I0138 - iron-siderophore ABC transporter, periplasmic binding protein 127 43.42 +1 178517..179617 + 366 209693761 fepD VSAL_I0139 - iron-siderophore ABC transporter, membrane permease component 128 46.00 +2 179607..180632 + 341 209693762 fecD VSAL_I0140 - iron-siderophore ABC transporter, membrane permease component 129 43.00 +1 180647..181453 + 268 209693763 fepC VSAL_I0141 - iron-siderophore ABC transporter, ATP-binding protein 130 37.78 0 181578..181892 + 104 209693764 - VSAL_I0142 - transposase 131 36.21 -1 181889..182236 + 115 209693765 - VSAL_I0143 - transposase 132 39.72 0 182308..183795 + 495 209693766 - VSAL_I0144 - transposase 133 43.75 +1 185316..186620 - 434 209693767 rhlB VSAL_I0146 - ATP-dependent RNA helicase RhlB 134 40.67 0 186733..187059 + 108 209693768 trxA VSAL_I0147 - thioredoxin 1 135 41.83 0 187298..188557 + 419 209693769 rho VSAL_I0148 - transcription termination factor rho 136 41.74 0 188701..189723 + 340 209693770 - VSAL_I0149 - hypothetical protein 137 42.56 +1 189820..191661 + 613 209693771 ubiD VSAL_I0150 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 138 39.02 0 191658..191921 + 87 209693772 - VSAL_I0151 - putative ferredoxin 139 43.46 +1 192020..192730 + 236 209693773 fre VSAL_I0152 - NAD(P)H-flavin reductase 140 37.78 0 194735..195049 - 104 209693774 - VSAL_I0155 - transposase 141 38.69 0 195363..197342 - 659 209693775 - VSAL_I0157 - membrane associated sulfatase 142 41.51 0 197379..198197 - 272 209693776 mutM VSAL_I0158 - formamidopyrimidine-DNA glycosylase 143 42.89 +1 198490..199431 + 313 209693777 hldD VSAL_I0159 - ADP-L-glycero-D-manno-heptose-6-epimerase 144 39.77 0 199602..200828 + 408 209693778 waaL VSAL_I0160 - O-antigen ligase WaaL 145 41.83 0 200825..201895 + 356 209693779 rfaF VSAL_I0161 - ADP-heptose-LPS heptosyltransferase II 146 40.06 0 201889..203151 + 420 209693780 kdtA VSAL_I0162 - 3-deoxy-D-manno-octulosonic-acid transferase 147 35.03 -1 203198..204199 + 333 209693781 - VSAL_I0163 - hypothetical protein 148 39.60 0 204352..205308 - 318 209693782 - VSAL_I0164 - transposase 149 34.78 -1 205561..206664 - 367 209693783 - VSAL_I0165 - hypothetical protein, putative pseudaminic acid biosynthesis protein 150 37.96 0 207356..208414 - 352 209693784 - VSAL_I0167 - nucleotidyl transferase 151 39.38 0 208430..209074 - 214 209693785 - VSAL_I0168 - putative acetyltransferase 152 40.13 0 209067..210140 - 357 209693786 - VSAL_I0169 - N-acetylneuraminic acid synthase 153 39.75 0 210148..211332 - 394 209693787 - VSAL_I0170 - UDP-N-acetylglucosamine 2-epimerase 154 40.75 0 211370..212515 - 381 209693788 - VSAL_I0171 - DegT/DnrJ/EryC1/StrS aminotransferase 155 37.87 0 212539..213729 - 396 209693789 - VSAL_I0172 - polysaccharide biosynthesis protein 156 33.07 -2 213847..214968 - 373 209693790 - VSAL_I0173 - hypothetical protein 157 34.03 -1 214965..216107 - 380 209693791 rffA VSAL_I0174 - lipopolysaccharide biosynthesis protein RffA 158 35.48 -1 216890..217729 - 279 209693792 wavT VSAL_I0176 - putative glycosyl transferase 159 39.43 0 217730..218287 - 185 209693793 rmlC VSAL_I0177 - dTDP-4-dehydrorhamnose 3,5-epimerase 160 38.42 0 219197..220081 - 294 209693794 rmlA VSAL_I0179 - glucose-1-phosphate thymidylyltransferase RmlA 161 39.93 0 220081..221172 - 363 209693795 rmlB VSAL_I0180 - dTDP-D-glucose-4,6-dehydratase 162 38.19 0 221194..223047 - 617 209693796 - VSAL_I0181 - membrane associated sulfatase 163 36.74 0 223080..223784 - 234 209693797 wavC VSAL_I0182 - lipopolysaccharide core oligosaccharide biosynthesis protein WavC 164 40.71 0 224160..225230 + 356 209693798 - VSAL_I0183 - glycosyl transferase 165 38.06 0 225230..226012 + 260 209693799 waaE VSAL_I0184 - glycosyl transferase 166 41.76 0 226012..227043 + 343 209693800 - VSAL_I0185 - glycosyl tranferase 167 41.10 0 227036..227524 + 162 209693801 coaD VSAL_I0186 - phosphopantetheine adenylyltransferase 168 38.69 0 227568..229547 - 659 209693802 - VSAL_I0187 - membrane protein 169 41.51 0 229584..230402 - 272 209693803 mutM VSAL_I0188 - formamidopyrimidine-DNA glycosylase 170 41.61 0 230590..231048 - 152 209693804 - VSAL_I0189 - hypothetical protein 171 38.10 0 231313..231480 - 55 209693805 rpmG VSAL_I0190 - 50S ribosomal protein L33 172 45.99 +2 231494..231730 - 78 209693806 rpmB VSAL_I0191 - 50S ribosomal protein L28 173 42.96 +1 231926..232600 - 224 209693807 radC VSAL_I0192 - DNA repair protein RadC 174 46.76 +2 232816..234036 + 406 209693808 coaBC VSAL_I0193 - coenzyme A biosynthesis bifunctional protein CoaBC 175 38.24 0 234260..234850 + 196 209693809 slmA VSAL_I0194 - HTH-type regulatory protein, TetR-family 176 43.21 +1 234906..235847 + 313 209693810 htrB VSAL_I0195 - lipid A biosynthesis lauroyl acyltransferase 177 44.02 +1 235883..236350 + 155 209693811 greB VSAL_I0196 - transcription elongation factor GreB 178 44.24 +1 236541..238877 + 778 209693812 - VSAL_I0197 - putative RNA binding protein 179 42.08 0 239187..239666 - 159 209693813 - VSAL_I0198 - hypothetical protein 180 46.06 +2 239701..240486 - 261 209693814 bioH VSAL_I0199 - carboxylesterase BioH 181 35.94 -1 240896..241777 + 293 209693815 - VSAL_I0201 - transposase 182 43.12 +1 244329..245636 - 435 209693816 envZ VSAL_I0203 - sensor outer membrane protein EnvZ 183 44.72 +1 245950..246669 - 239 209693817 ompR VSAL_I0204 - response regulator homolog OmpR 184 39.41 0 246879..247619 + 246 209693818 - VSAL_I0205 - putative partitioning protein ParA 185 44.71 +1 247781..248290 - 169 209693819 pyrE VSAL_I0206 - orotate phosphoribosyltransferase 186 47.70 +2 248525..249241 - 238 209693820 rph VSAL_I0207 - ribonuclease PH 187 44.21 +1 249413..250276 + 287 209693821 - VSAL_I0208 - outer membrane protein 188 41.03 0 250359..250787 - 142 209693822 - VSAL_I0209 - phosphate-starvation-inducible E 189 38.30 0 250943..251566 + 207 209693823 gmk VSAL_I0210 - 5'guanylate kinase 190 46.15 +2 251679..251951 + 90 209693824 rpoZ VSAL_I0211 - DNA-directed RNA polymerase, omega chain 191 44.13 +1 252018..254147 + 709 209693825 spoT VSAL_I0212 - guanosine-3',5'-bisbis(diphosphate) 3'-pyrophosphydrolase 192 39.72 0 254992..256479 - 495 209693826 - VSAL_I0214 - transposase 193 36.21 -1 256551..256898 - 115 209693827 - VSAL_I0215 - transposase 194 37.78 0 256895..257209 - 104 209693828 - VSAL_I0216 - transposase 195 41.96 0 257294..258475 - 393 209693829 hemY VSAL_I0217 - protein HemY 196 41.40 0 258472..259686 - 404 209693830 hemX VSAL_I0218 - putative uroporphyrin-III C-methyltransferase HemX 197 42.84 +1 259699..260445 - 248 209693831 hemD VSAL_I0219 - uroporphyrinogen III synthase HemD 198 44.44 +1 260447..261382 - 311 209693832 hemC VSAL_I0220 - porphobilinogen deaminase HemC 199 38.99 0 261640..264150 + 836 209693833 cya VSAL_I0221 - adenylate cyclase 200 42.99 +1 264252..266456 + 734 209693834 uvrD VSAL_I0222 - DNA helicase II UvrD 201 38.24 0 267419..268336 - 305 209693835 rarD VSAL_I0223 - chloramphenicol-sensitive protein RarD 202 41.56 0 268514..270349 + 611 209693836 recQ VSAL_I0224 - ATP-dependent DNA helicase RecQ 203 37.11 0 270353..270643 + 96 209693837 - VSAL_I0225 - hypothetical protein 204 39.79 0 270782..271447 + 221 209693838 - VSAL_I0226 - integral membrane protein 205 41.82 0 272158..274962 + 934 209693839 polA VSAL_I0227 - DNA polymerase I 206 39.26 0 275687..276361 - 224 209693840 engB VSAL_I0228 - probable gtp-binding protein EngB 207 44.82 +1 276622..277239 + 205 209693841 - VSAL_I0229 - cytochrome c 208 41.40 0 277381..278025 + 214 209693842 - VSAL_I0230 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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