IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1469	 37.06	0	1708107..1708508	-	133	209695103	-	VSAL_I1600	-	hypothetical protein
1470	 35.94	-1	1708787..1709668	+	293	209695104	-	VSAL_I1601	-	transposase
1471	 32.92	-2	1710845..1711087	+	80	209695105	-	VSAL_I1603	-	hypothetical protein
1472	 35.94	-1	1711527..1712408	-	293	209695106	-	VSAL_I1605	-	transposase
1473	 34.35	-1	1712535..1712927	+	130	209695107	-	VSAL_I1606	-	hypothetical protein
1474	 37.36	0	1713042..1714034	-	330	209695108	-	VSAL_I1607	-	3',5'-cyclic-nucleotide phosphodiesterase
1475	 42.62	+1	1714289..1715311	+	340	209695109	galR	VSAL_I1608	-	HTH-type transcriptional regulator GalR
1476	 42.96	+1	1715448..1716902	+	484	209695110	-	VSAL_I1609	-	sodium/proton antiporter
1477	 40.92	0	1716912..1718084	+	390	209695111	-	VSAL_I1610	-	putative aminotransferase class I and II
1478	 37.32	0	1718165..1718992	-	275	209695112	-	VSAL_I1611	-	HTH-type transcriptional regulator, AraC family
1479	 39.69	0	1719060..1719956	+	298	209695113	-	VSAL_I1612	-	integral membrane protein
1480	 39.21	0	1720037..1721143	-	368	209695114	manA	VSAL_I1613	-	mannose-6-phosphate isomerase (phosphomannose isomerase)
1481	 39.66	0	1721143..1722312	-	389	209695115	malY	VSAL_I1614	-	cystathionine beta-lyase
1482	 41.25	0	1722394..1723971	-	525	209695116	malX	VSAL_I1615	-	PTS permease for glucose
1483	 35.70	-1	1724094..1724516	+	140	209695117	-	VSAL_I1616	-	transposase
1484	 34.04	-1	1724534..1725100	+	188	209695118	-	VSAL_I1617	-	transposase
1485	 38.61	0	1725340..1726362	+	340	209695119	malI	VSAL_I1618	-	maltose regulon regulatory protein MalI
1486	 40.32	0	1726446..1727318	-	290	209695120	-	VSAL_I1619	-	integral membrane protein
1487	 35.70	-1	1727439..1727861	+	140	209695121	-	VSAL_I1620	-	transposase
1488	 34.04	-1	1727879..1728445	+	188	209695122	-	VSAL_I1621	-	transposase
1489	 36.01	-1	1728578..1728988	-	136	209695123	-	VSAL_I1622	-	putative cell wall lytic enzyme
1490	 40.05	0	1729423..1730166	+	247	209695124	-	VSAL_I1623	-	putative sucrose-6F-phosphate phosphohydrolase
1491	 36.87	0	1730343..1730993	-	216	209695125	elbB	VSAL_I1624	-	enhancing lycopene biosynthesis protein 2
1492	 34.81	-1	1731257..1731661	+	134	209695126	-	VSAL_I1625	-	hypothetical protein
1493	 34.98	-1	1731713..1732441	+	242	209695127	-	VSAL_I1626	-	MltA-interacting protein MipA
1494	 30.46	-2	1732609..1733025	+	138	209695128	-	VSAL_I1627	-	membrane protein
1495	 30.94	-2	1733066..1734028	+	320	209695129	-	VSAL_I1628	-	putative radical SAM superfamily protein
1496	 36.26	-1	1734710..1735324	+	204	209695130	-	VSAL_I1630	-	hypothetical protein
1497	 35.70	-1	1736783..1737205	+	140	209695131	-	VSAL_I1632	-	transposase
1498	 34.04	-1	1737223..1737789	+	188	209695132	-	VSAL_I1633	-	transposase
1499	 36.07	-1	1737876..1738826	+	316	209695133	-	VSAL_I1634	-	hypothetical protein
1500	 30.00	-2	1738833..1740002	+	389	209695134	-	VSAL_I1635	-	putative methylthioribose kinase
1501	 32.97	-2	1740065..1741708	-	547	209695135	-	VSAL_I1636	-	methyl-accepting chemotaxis protein
1502	 39.60	0	1741945..1742901	+	318	209695136	-	VSAL_I1637	-	transposase
1503	 40.62	0	1743084..1743371	+	95	209695137	-	VSAL_I1638	-	hypothetical protein, putative phage gene
1504	 36.31	-1	1743368..1743871	+	167	209695138	-	VSAL_I1639	-	hypothetical protein, putative phage gene
1505	 37.80	0	1744160..1744405	-	81	209695139	-	VSAL_I1640	-	hypothetical protein, putative phage gene
1506	 35.98	-1	1744395..1744658	-	87	209695140	-	VSAL_I1641	-	hypothetical protein, putative phage gene
1507	 27.97	-2	1744838..1745956	-	372	209695141	-	VSAL_I1642	-	hypothetical protein, putative phage gene
1508	 31.72	-2	1745949..1746257	-	102	209695142	-	VSAL_I1643	-	hypothetical protein, putative phage gene
1509	 33.03	-2	1746239..1746901	-	220	209695143	-	VSAL_I1644	-	hypothetical protein, putative phage gene
1510	 38.73	0	1747082..1747396	-	104	209695144	-	VSAL_I1645	-	putative DNA-binding protein, putative phage gene
1511	 39.22	0	1747383..1747739	-	118	209695145	-	VSAL_I1646	-	hypothetical protein, putative phage gene
1512	 34.65	-1	1747924..1748379	-	151	209695146	-	VSAL_I1647	-	putative membrane protein, putative phage gene
1513	 36.84	0	1748538..1748993	-	151	209695147	-	VSAL_I1648	-	hypothetical protein, putative phage gene
1514	 37.35	0	1749138..1749884	-	248	209695148	-	VSAL_I1649	-	putative membrane protein, putative phage gene
1515	 45.59	+1	1750329..1750532	-	67	209695149	-	VSAL_I1650	-	putative membrane protein, putative phage gene
1516	 32.53	-2	1750561..1751307	-	248	209695150	-	VSAL_I1651	-	hypothetical protein, putative phage gene
1517	 35.94	-1	1751427..1752308	-	293	209695151	-	VSAL_I1652	-	transposase
1518	 37.82	0	1753065..1753376	+	103	209695152	-	VSAL_I1654	-	transposase
1519	 36.21	-1	1753373..1753720	+	115	209695153	-	VSAL_I1655	-	transposase
1520	 39.65	0	1753792..1755279	+	495	209695154	-	VSAL_I1656	-	transposase
1521	 42.78	+1	1756764..1757726	+	320	209695155	-	VSAL_I1658	-	glycosylasparaginase
1522	 35.62	-1	1757741..1758046	+	101	209695156	-	VSAL_I1659	-	PTS system, Lactose/Cellobiose specific IIB subunit
1523	 38.01	0	1758057..1758377	+	106	209695157	chbA	VSAL_I1660	-	PTS system, lactose/cellobiose specific IIA subunit
1524	 37.78	0	1758749..1759063	+	104	209695158	-	VSAL_I1662	-	transposase
1525	 36.21	-1	1759060..1759407	+	115	209695159	-	VSAL_I1663	-	transposase
1526	 39.78	0	1759479..1760966	+	495	209695160	-	VSAL_I1664	-	transposase
1527	 39.86	0	1761156..1761431	+	91	209695161	-	VSAL_I1665	-	hypothetical protein
1528	 41.67	0	1761434..1761961	+	175	209695162	-	VSAL_I1666	-	hypothetical protein
1529	 36.64	0	1761998..1762663	-	221	209695163	-	VSAL_I1667	-	hypothetical protein
1530	 40.00	0	1763023..1763442	+	139	209695164	ibpA	VSAL_I1668	-	small heat shock protein IbpA (16 kDa heat shock protein A)
1531	 44.08	+1	1763657..1765555	+	632	209695165	dnaK	VSAL_I1669	-	chaperone protein DnaK (heat shock protein 70)
1532	 37.82	0	1765750..1766061	+	103	209695166	-	VSAL_I1670	-	transposase
1533	 36.21	-1	1766058..1766405	+	115	209695167	-	VSAL_I1671	-	transposase
1534	 39.65	0	1766477..1767964	+	495	209695168	-	VSAL_I1672	-	transposase
1535	 41.54	0	1768022..1768630	-	202	209695169	-	VSAL_I1673	-	DNA repair protein
1536	 39.63	0	1768823..1769839	+	338	209695170	-	VSAL_I1674	-	hypothetical protein
1537	 38.01	0	1769971..1770141	+	56	209695171	-	VSAL_I1675	-	hypothetical protein
1538	 43.33	+1	1770234..1770923	-	229	209695172	aqpZ	VSAL_I1676	-	aquaporin Z (bacterial nodulin-like intrinsic protein)
1539	 26.54	-2	1771566..1772036	+	156	209695173	-	VSAL_I1677	-	hypothetical protein
1540	 27.71	-2	1772086..1773774	+	562	209695174	-	VSAL_I1678	-	hypothetical protein
1541	 41.82	0	1775608..1777032	+	474	209695175	sbcB	VSAL_I1680	-	exodeoxyribonuclease I
1542	 40.54	0	1777055..1777387	+	110	209695176	-	VSAL_I1681	-	inner membrane protein, LrgA family
1543	 41.48	0	1777695..1778774	+	359	209695177	-	VSAL_I1683	-	transposase
1544	 40.92	0	1779190..1780098	+	302	209695178	cdd	VSAL_I1684	-	cytidine deaminase
1545	 40.62	0	1780153..1781319	-	388	209695179	-	VSAL_I1685	-	putative amidase
1546	 42.94	+1	1781538..1782713	+	391	209695180	purT	VSAL_I1686	-	phosphoribosylglycinamide formyltransferase 2
1547	 40.83	0	1782903..1784102	+	399	209695181	aspC	VSAL_I1687	-	aspartate aminotransferase
1548	 38.79	0	1784225..1785415	-	396	209695182	-	VSAL_I1688	-	hypothetical protein
1549	 40.72	0	1785450..1786424	-	324	209695183	cysB	VSAL_I1689	-	HTH-type transcriptional regulator CysB
1550	 35.69	-1	1786702..1787466	+	254	209695184	-	VSAL_I1690	-	hypothetical protein
1551	 35.94	-1	1787903..1788784	-	293	209695185	-	VSAL_I1692	-	transposase
1552	 35.06	-1	1789542..1789946	+	134	209695186	-	VSAL_I1693	-	hypothetical protein
1553	 33.07	-2	1789950..1790333	-	127	209695187	-	VSAL_I1694	-	hypothetical protein
1554	 39.85	0	1790585..1792273	-	562	209695188	-	VSAL_I1695	-	hypothetical protein
1555	 35.07	-1	1792347..1792634	-	95	209695189	-	VSAL_I1696	-	glutaredoxin-3 (grx3)
1556	 35.21	-1	1792702..1793448	-	248	209695190	-	VSAL_I1697	-	hypothetical protein
1557	 38.77	0	1793641..1794744	+	367	209695191	-	VSAL_I1698	-	phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase
1558	 41.20	0	1794854..1795387	-	177	209695192	-	VSAL_I1699	-	outer membrane protein, OmpA-like
1559	 41.08	0	1795434..1799330	-	1298	209695193	hrpA	VSAL_I1700	-	ATP-dependent helicase HrpA
1560	 36.52	0	1799568..1800635	+	355	209695194	-	VSAL_I1701	-	outer membrane protein, OmpA family
1561	 35.83	-1	1802253..1803134	-	293	209695195	-	VSAL_I1703	-	transposase
1562	 41.28	0	1804059..1804385	+	108	209695196	-	VSAL_I1705	-	hypothetical protein
1563	 39.19	0	1804404..1804676	-	90	209695197	-	VSAL_I1706	-	putative acylphosphatase
1564	 40.55	0	1805105..1806295	+	396	209695198	-	VSAL_I1708	-	transposase
1565	 40.22	0	1806799..1807989	+	396	209695199	-	VSAL_I1709	-	hypothetical protein
1566	 36.47	0	1821513..1821863	+	116	209695200	-	VSAL_I1711	-	hypothetical protein
1567	 40.60	0	1821978..1823036	-	352	209695201	glpQ	VSAL_I1712	-	glycerophosphoryl diester phosphodiesterase precursor
1568	 42.70	+1	1823160..1824611	-	483	209695202	glpT	VSAL_I1713	-	glycerol-3-phosphate transporter
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.