version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1454 39.50 0 1695383..1696096 - 237 209695088 npdA VSAL_I1585 - NAD-dependent deacetylase 1455 37.83 0 1696300..1697211 + 303 209695089 - VSAL_I1586 - HTH-type transcriptional regulator, LysR family 1456 41.03 0 1697451..1698671 + 406 209695090 - VSAL_I1587 - sodium-dependent nucleoside transporter 1457 38.83 0 1698752..1699042 - 96 209695091 - VSAL_I1588 - hypothetical protein 1458 38.46 0 1699160..1699471 - 103 209695092 - VSAL_I1589 - hypothetical protein 1459 37.44 0 1699484..1700140 - 218 209695093 qnr VSAL_I1590 - quinolone resistance determinant QnrC 1460 34.53 -1 1700575..1700991 - 138 209695094 - VSAL_I1591 - hypothetical protein 1461 35.74 -1 1701252..1701584 - 110 209695095 - VSAL_I1592 - hypothetical protein 1462 37.27 0 1701633..1701962 - 109 209695096 - VSAL_I1593 - hypothetical protein 1463 37.78 0 1701980..1702384 - 134 209695097 - VSAL_I1594 - putative NUDIX hydrolase 1464 38.77 0 1702528..1703538 + 336 209695098 - VSAL_I1595 - putative lipoprotein 1465 32.54 -2 1703556..1704059 - 167 209695099 - VSAL_I1596 - membrane protein 1466 38.60 0 1704213..1706168 - 651 209695100 - VSAL_I1597 - soluble lytic murein transglycosylase precursor 1467 37.04 0 1706247..1706543 - 98 209695101 - VSAL_I1598 - membrane protein 1468 41.48 0 1706725..1708062 + 445 209695102 - VSAL_I1599 - putative polysaccharide deacetylase 1469 37.06 0 1708107..1708508 - 133 209695103 - VSAL_I1600 - hypothetical protein 1470 35.94 -1 1708787..1709668 + 293 209695104 - VSAL_I1601 - transposase 1471 32.92 -2 1710845..1711087 + 80 209695105 - VSAL_I1603 - hypothetical protein 1472 35.94 -1 1711527..1712408 - 293 209695106 - VSAL_I1605 - transposase 1473 34.35 -1 1712535..1712927 + 130 209695107 - VSAL_I1606 - hypothetical protein 1474 37.36 0 1713042..1714034 - 330 209695108 - VSAL_I1607 - 3',5'-cyclic-nucleotide phosphodiesterase 1475 42.62 +1 1714289..1715311 + 340 209695109 galR VSAL_I1608 - HTH-type transcriptional regulator GalR 1476 42.96 +1 1715448..1716902 + 484 209695110 - VSAL_I1609 - sodium/proton antiporter 1477 40.92 0 1716912..1718084 + 390 209695111 - VSAL_I1610 - putative aminotransferase class I and II 1478 37.32 0 1718165..1718992 - 275 209695112 - VSAL_I1611 - HTH-type transcriptional regulator, AraC family 1479 39.69 0 1719060..1719956 + 298 209695113 - VSAL_I1612 - integral membrane protein 1480 39.21 0 1720037..1721143 - 368 209695114 manA VSAL_I1613 - mannose-6-phosphate isomerase (phosphomannose isomerase) 1481 39.66 0 1721143..1722312 - 389 209695115 malY VSAL_I1614 - cystathionine beta-lyase 1482 41.25 0 1722394..1723971 - 525 209695116 malX VSAL_I1615 - PTS permease for glucose 1483 35.70 -1 1724094..1724516 + 140 209695117 - VSAL_I1616 - transposase 1484 34.04 -1 1724534..1725100 + 188 209695118 - VSAL_I1617 - transposase 1485 38.61 0 1725340..1726362 + 340 209695119 malI VSAL_I1618 - maltose regulon regulatory protein MalI 1486 40.32 0 1726446..1727318 - 290 209695120 - VSAL_I1619 - integral membrane protein 1487 35.70 -1 1727439..1727861 + 140 209695121 - VSAL_I1620 - transposase 1488 34.04 -1 1727879..1728445 + 188 209695122 - VSAL_I1621 - transposase 1489 36.01 -1 1728578..1728988 - 136 209695123 - VSAL_I1622 - putative cell wall lytic enzyme 1490 40.05 0 1729423..1730166 + 247 209695124 - VSAL_I1623 - putative sucrose-6F-phosphate phosphohydrolase 1491 36.87 0 1730343..1730993 - 216 209695125 elbB VSAL_I1624 - enhancing lycopene biosynthesis protein 2 1492 34.81 -1 1731257..1731661 + 134 209695126 - VSAL_I1625 - hypothetical protein 1493 34.98 -1 1731713..1732441 + 242 209695127 - VSAL_I1626 - MltA-interacting protein MipA 1494 30.46 -2 1732609..1733025 + 138 209695128 - VSAL_I1627 - membrane protein 1495 30.94 -2 1733066..1734028 + 320 209695129 - VSAL_I1628 - putative radical SAM superfamily protein 1496 36.26 -1 1734710..1735324 + 204 209695130 - VSAL_I1630 - hypothetical protein 1497 35.70 -1 1736783..1737205 + 140 209695131 - VSAL_I1632 - transposase 1498 34.04 -1 1737223..1737789 + 188 209695132 - VSAL_I1633 - transposase 1499 36.07 -1 1737876..1738826 + 316 209695133 - VSAL_I1634 - hypothetical protein 1500 30.00 -2 1738833..1740002 + 389 209695134 - VSAL_I1635 - putative methylthioribose kinase 1501 32.97 -2 1740065..1741708 - 547 209695135 - VSAL_I1636 - methyl-accepting chemotaxis protein 1502 39.60 0 1741945..1742901 + 318 209695136 - VSAL_I1637 - transposase 1503 40.62 0 1743084..1743371 + 95 209695137 - VSAL_I1638 - hypothetical protein, putative phage gene 1504 36.31 -1 1743368..1743871 + 167 209695138 - VSAL_I1639 - hypothetical protein, putative phage gene 1505 37.80 0 1744160..1744405 - 81 209695139 - VSAL_I1640 - hypothetical protein, putative phage gene 1506 35.98 -1 1744395..1744658 - 87 209695140 - VSAL_I1641 - hypothetical protein, putative phage gene 1507 27.97 -2 1744838..1745956 - 372 209695141 - VSAL_I1642 - hypothetical protein, putative phage gene 1508 31.72 -2 1745949..1746257 - 102 209695142 - VSAL_I1643 - hypothetical protein, putative phage gene 1509 33.03 -2 1746239..1746901 - 220 209695143 - VSAL_I1644 - hypothetical protein, putative phage gene 1510 38.73 0 1747082..1747396 - 104 209695144 - VSAL_I1645 - putative DNA-binding protein, putative phage gene 1511 39.22 0 1747383..1747739 - 118 209695145 - VSAL_I1646 - hypothetical protein, putative phage gene 1512 34.65 -1 1747924..1748379 - 151 209695146 - VSAL_I1647 - putative membrane protein, putative phage gene 1513 36.84 0 1748538..1748993 - 151 209695147 - VSAL_I1648 - hypothetical protein, putative phage gene 1514 37.35 0 1749138..1749884 - 248 209695148 - VSAL_I1649 - putative membrane protein, putative phage gene 1515 45.59 +1 1750329..1750532 - 67 209695149 - VSAL_I1650 - putative membrane protein, putative phage gene 1516 32.53 -2 1750561..1751307 - 248 209695150 - VSAL_I1651 - hypothetical protein, putative phage gene 1517 35.94 -1 1751427..1752308 - 293 209695151 - VSAL_I1652 - transposase 1518 37.82 0 1753065..1753376 + 103 209695152 - VSAL_I1654 - transposase 1519 36.21 -1 1753373..1753720 + 115 209695153 - VSAL_I1655 - transposase 1520 39.65 0 1753792..1755279 + 495 209695154 - VSAL_I1656 - transposase 1521 42.78 +1 1756764..1757726 + 320 209695155 - VSAL_I1658 - glycosylasparaginase 1522 35.62 -1 1757741..1758046 + 101 209695156 - VSAL_I1659 - PTS system, Lactose/Cellobiose specific IIB subunit 1523 38.01 0 1758057..1758377 + 106 209695157 chbA VSAL_I1660 - PTS system, lactose/cellobiose specific IIA subunit 1524 37.78 0 1758749..1759063 + 104 209695158 - VSAL_I1662 - transposase 1525 36.21 -1 1759060..1759407 + 115 209695159 - VSAL_I1663 - transposase 1526 39.78 0 1759479..1760966 + 495 209695160 - VSAL_I1664 - transposase 1527 39.86 0 1761156..1761431 + 91 209695161 - VSAL_I1665 - hypothetical protein 1528 41.67 0 1761434..1761961 + 175 209695162 - VSAL_I1666 - hypothetical protein 1529 36.64 0 1761998..1762663 - 221 209695163 - VSAL_I1667 - hypothetical protein 1530 40.00 0 1763023..1763442 + 139 209695164 ibpA VSAL_I1668 - small heat shock protein IbpA (16 kDa heat shock protein A) 1531 44.08 +1 1763657..1765555 + 632 209695165 dnaK VSAL_I1669 - chaperone protein DnaK (heat shock protein 70) 1532 37.82 0 1765750..1766061 + 103 209695166 - VSAL_I1670 - transposase 1533 36.21 -1 1766058..1766405 + 115 209695167 - VSAL_I1671 - transposase 1534 39.65 0 1766477..1767964 + 495 209695168 - VSAL_I1672 - transposase 1535 41.54 0 1768022..1768630 - 202 209695169 - VSAL_I1673 - DNA repair protein 1536 39.63 0 1768823..1769839 + 338 209695170 - VSAL_I1674 - hypothetical protein 1537 38.01 0 1769971..1770141 + 56 209695171 - VSAL_I1675 - hypothetical protein 1538 43.33 +1 1770234..1770923 - 229 209695172 aqpZ VSAL_I1676 - aquaporin Z (bacterial nodulin-like intrinsic protein) 1539 26.54 -2 1771566..1772036 + 156 209695173 - VSAL_I1677 - hypothetical protein 1540 27.71 -2 1772086..1773774 + 562 209695174 - VSAL_I1678 - hypothetical protein 1541 41.82 0 1775608..1777032 + 474 209695175 sbcB VSAL_I1680 - exodeoxyribonuclease I 1542 40.54 0 1777055..1777387 + 110 209695176 - VSAL_I1681 - inner membrane protein, LrgA family 1543 41.48 0 1777695..1778774 + 359 209695177 - VSAL_I1683 - transposase 1544 40.92 0 1779190..1780098 + 302 209695178 cdd VSAL_I1684 - cytidine deaminase 1545 40.62 0 1780153..1781319 - 388 209695179 - VSAL_I1685 - putative amidase 1546 42.94 +1 1781538..1782713 + 391 209695180 purT VSAL_I1686 - phosphoribosylglycinamide formyltransferase 2 1547 40.83 0 1782903..1784102 + 399 209695181 aspC VSAL_I1687 - aspartate aminotransferase 1548 38.79 0 1784225..1785415 - 396 209695182 - VSAL_I1688 - hypothetical protein 1549 40.72 0 1785450..1786424 - 324 209695183 cysB VSAL_I1689 - HTH-type transcriptional regulator CysB 1550 35.69 -1 1786702..1787466 + 254 209695184 - VSAL_I1690 - hypothetical protein 1551 35.94 -1 1787903..1788784 - 293 209695185 - VSAL_I1692 - transposase 1552 35.06 -1 1789542..1789946 + 134 209695186 - VSAL_I1693 - hypothetical protein 1553 33.07 -2 1789950..1790333 - 127 209695187 - VSAL_I1694 - hypothetical protein 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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