IslandPathversion 1.0

IslandPath Analysis: Aliivibrio salmonicida LFI1238



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.44 STD DEV: 3.11
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165
2820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1427	 31.77	-2	1669730..1670176	+	148	209695061	-	VSAL_I1558	-	hypothetical protein
1428	 33.88	-1	1670230..1670781	-	183	209695062	-	VSAL_I1559	-	putative lipoprotein
1429	 33.57	-1	1671140..1673233	-	697	209695063	-	VSAL_I1560	-	response regulator, histidine kinase
1430	 35.78	-1	1673234..1674418	-	394	209695064	-	VSAL_I1561	-	hypothetical protein
1431	 34.65	-1	1674517..1674972	-	151	209695065	-	VSAL_I1562	-	hypothetical protein
1432	 41.51	0	1675242..1676672	+	476	209695066	ctaD	VSAL_I1563	-	cytochrome c oxidase subunit 1
1433	 42.32	0	1676685..1677296	+	203	209695067	fixO	VSAL_I1564	-	mono-heme cytochrome c
1434	 38.80	0	1677307..1677489	+	60	209695068	-	VSAL_I1565	-	Cbb3-type cytochrome oxidase component
1435	 41.85	0	1677486..1678460	+	324	209695069	-	VSAL_I1566	-	diheme cytochrome c
1436	 36.21	-1	1678533..1679018	+	161	209695070	-	VSAL_I1567	-	hypothetical protein
1437	 39.35	0	1679025..1681400	+	791	209695071	-	VSAL_I1568	-	putative cation-transporting ATPase
1438	 35.67	-1	1681393..1681563	+	56	209695072	-	VSAL_I1569	-	cytochrome oxidase maturation protein (cbb3-t)
1439	 38.96	0	1681553..1682227	+	224	209695073	-	VSAL_I1570	-	membrane protein
1440	 38.91	0	1682324..1683076	+	250	209695074	fnr	VSAL_I1571	-	fumarate and nitrate reduction regulatory protein
1441	 38.94	0	1683229..1684173	+	314	209695075	uspE	VSAL_I1572	-	universal stress protein E
1442	 39.07	0	1684330..1685253	+	307	209695076	-	VSAL_I1573	-	hypothetical protein
1443	 37.78	0	1685410..1685724	+	104	209695077	-	VSAL_I1574	-	transposase
1444	 36.21	-1	1685721..1686068	+	115	209695078	-	VSAL_I1575	-	transposase
1445	 39.72	0	1686140..1687627	+	495	209695079	-	VSAL_I1576	-	transposase
1446	 37.31	0	1687651..1688304	-	217	209695080	-	VSAL_I1577	-	hypothetical protein
1447	 39.70	0	1688306..1689043	-	245	209695081	-	VSAL_I1578	-	putative lipoprotein
1448	 36.79	0	1689051..1689860	-	269	209695082	-	VSAL_I1579	-	membrane protein
1449	 41.38	0	1690197..1691315	+	372	209695083	potA	VSAL_I1580	-	spermidine/putrescine transport ATP-binding protein PotA
1450	 36.60	0	1691299..1692156	+	285	209695084	potB	VSAL_I1581	-	spermidine/putrescine transport system permease protein PotB
1451	 38.00	0	1692156..1692926	+	256	209695085	potC	VSAL_I1582	-	spermidine/putrescine transport system permease protein PotC
1452	 38.48	0	1692980..1694068	+	362	209695086	potD	VSAL_I1583	-	spermidine/putrescine-binding periplasmic protein precursor (SPBP)
1453	 39.18	0	1694251..1695294	+	347	209695087	potD	VSAL_I1584	-	spermidine/putrescine-binding periplasmic protein precursor (SPBP)
1454	 39.50	0	1695383..1696096	-	237	209695088	npdA	VSAL_I1585	-	NAD-dependent deacetylase
1455	 37.83	0	1696300..1697211	+	303	209695089	-	VSAL_I1586	-	HTH-type transcriptional regulator, LysR family
1456	 41.03	0	1697451..1698671	+	406	209695090	-	VSAL_I1587	-	sodium-dependent nucleoside transporter
1457	 38.83	0	1698752..1699042	-	96	209695091	-	VSAL_I1588	-	hypothetical protein
1458	 38.46	0	1699160..1699471	-	103	209695092	-	VSAL_I1589	-	hypothetical protein
1459	 37.44	0	1699484..1700140	-	218	209695093	qnr	VSAL_I1590	-	quinolone resistance determinant QnrC
1460	 34.53	-1	1700575..1700991	-	138	209695094	-	VSAL_I1591	-	hypothetical protein
1461	 35.74	-1	1701252..1701584	-	110	209695095	-	VSAL_I1592	-	hypothetical protein
1462	 37.27	0	1701633..1701962	-	109	209695096	-	VSAL_I1593	-	hypothetical protein
1463	 37.78	0	1701980..1702384	-	134	209695097	-	VSAL_I1594	-	putative NUDIX hydrolase
1464	 38.77	0	1702528..1703538	+	336	209695098	-	VSAL_I1595	-	putative lipoprotein
1465	 32.54	-2	1703556..1704059	-	167	209695099	-	VSAL_I1596	-	membrane protein
1466	 38.60	0	1704213..1706168	-	651	209695100	-	VSAL_I1597	-	soluble lytic murein transglycosylase precursor
1467	 37.04	0	1706247..1706543	-	98	209695101	-	VSAL_I1598	-	membrane protein
1468	 41.48	0	1706725..1708062	+	445	209695102	-	VSAL_I1599	-	putative polysaccharide deacetylase
1469	 37.06	0	1708107..1708508	-	133	209695103	-	VSAL_I1600	-	hypothetical protein
1470	 35.94	-1	1708787..1709668	+	293	209695104	-	VSAL_I1601	-	transposase
1471	 32.92	-2	1710845..1711087	+	80	209695105	-	VSAL_I1603	-	hypothetical protein
1472	 35.94	-1	1711527..1712408	-	293	209695106	-	VSAL_I1605	-	transposase
1473	 34.35	-1	1712535..1712927	+	130	209695107	-	VSAL_I1606	-	hypothetical protein
1474	 37.36	0	1713042..1714034	-	330	209695108	-	VSAL_I1607	-	3',5'-cyclic-nucleotide phosphodiesterase
1475	 42.62	+1	1714289..1715311	+	340	209695109	galR	VSAL_I1608	-	HTH-type transcriptional regulator GalR
1476	 42.96	+1	1715448..1716902	+	484	209695110	-	VSAL_I1609	-	sodium/proton antiporter
1477	 40.92	0	1716912..1718084	+	390	209695111	-	VSAL_I1610	-	putative aminotransferase class I and II
1478	 37.32	0	1718165..1718992	-	275	209695112	-	VSAL_I1611	-	HTH-type transcriptional regulator, AraC family
1479	 39.69	0	1719060..1719956	+	298	209695113	-	VSAL_I1612	-	integral membrane protein
1480	 39.21	0	1720037..1721143	-	368	209695114	manA	VSAL_I1613	-	mannose-6-phosphate isomerase (phosphomannose isomerase)
1481	 39.66	0	1721143..1722312	-	389	209695115	malY	VSAL_I1614	-	cystathionine beta-lyase
1482	 41.25	0	1722394..1723971	-	525	209695116	malX	VSAL_I1615	-	PTS permease for glucose
1483	 35.70	-1	1724094..1724516	+	140	209695117	-	VSAL_I1616	-	transposase
1484	 34.04	-1	1724534..1725100	+	188	209695118	-	VSAL_I1617	-	transposase
1485	 38.61	0	1725340..1726362	+	340	209695119	malI	VSAL_I1618	-	maltose regulon regulatory protein MalI
1486	 40.32	0	1726446..1727318	-	290	209695120	-	VSAL_I1619	-	integral membrane protein
1487	 35.70	-1	1727439..1727861	+	140	209695121	-	VSAL_I1620	-	transposase
1488	 34.04	-1	1727879..1728445	+	188	209695122	-	VSAL_I1621	-	transposase
1489	 36.01	-1	1728578..1728988	-	136	209695123	-	VSAL_I1622	-	putative cell wall lytic enzyme
1490	 40.05	0	1729423..1730166	+	247	209695124	-	VSAL_I1623	-	putative sucrose-6F-phosphate phosphohydrolase
1491	 36.87	0	1730343..1730993	-	216	209695125	elbB	VSAL_I1624	-	enhancing lycopene biosynthesis protein 2
1492	 34.81	-1	1731257..1731661	+	134	209695126	-	VSAL_I1625	-	hypothetical protein
1493	 34.98	-1	1731713..1732441	+	242	209695127	-	VSAL_I1626	-	MltA-interacting protein MipA
1494	 30.46	-2	1732609..1733025	+	138	209695128	-	VSAL_I1627	-	membrane protein
1495	 30.94	-2	1733066..1734028	+	320	209695129	-	VSAL_I1628	-	putative radical SAM superfamily protein
1496	 36.26	-1	1734710..1735324	+	204	209695130	-	VSAL_I1630	-	hypothetical protein
1497	 35.70	-1	1736783..1737205	+	140	209695131	-	VSAL_I1632	-	transposase
1498	 34.04	-1	1737223..1737789	+	188	209695132	-	VSAL_I1633	-	transposase
1499	 36.07	-1	1737876..1738826	+	316	209695133	-	VSAL_I1634	-	hypothetical protein
1500	 30.00	-2	1738833..1740002	+	389	209695134	-	VSAL_I1635	-	putative methylthioribose kinase
1501	 32.97	-2	1740065..1741708	-	547	209695135	-	VSAL_I1636	-	methyl-accepting chemotaxis protein
1502	 39.60	0	1741945..1742901	+	318	209695136	-	VSAL_I1637	-	transposase
1503	 40.62	0	1743084..1743371	+	95	209695137	-	VSAL_I1638	-	hypothetical protein, putative phage gene
1504	 36.31	-1	1743368..1743871	+	167	209695138	-	VSAL_I1639	-	hypothetical protein, putative phage gene
1505	 37.80	0	1744160..1744405	-	81	209695139	-	VSAL_I1640	-	hypothetical protein, putative phage gene
1506	 35.98	-1	1744395..1744658	-	87	209695140	-	VSAL_I1641	-	hypothetical protein, putative phage gene
1507	 27.97	-2	1744838..1745956	-	372	209695141	-	VSAL_I1642	-	hypothetical protein, putative phage gene
1508	 31.72	-2	1745949..1746257	-	102	209695142	-	VSAL_I1643	-	hypothetical protein, putative phage gene
1509	 33.03	-2	1746239..1746901	-	220	209695143	-	VSAL_I1644	-	hypothetical protein, putative phage gene
1510	 38.73	0	1747082..1747396	-	104	209695144	-	VSAL_I1645	-	putative DNA-binding protein, putative phage gene
1511	 39.22	0	1747383..1747739	-	118	209695145	-	VSAL_I1646	-	hypothetical protein, putative phage gene
1512	 34.65	-1	1747924..1748379	-	151	209695146	-	VSAL_I1647	-	putative membrane protein, putative phage gene
1513	 36.84	0	1748538..1748993	-	151	209695147	-	VSAL_I1648	-	hypothetical protein, putative phage gene
1514	 37.35	0	1749138..1749884	-	248	209695148	-	VSAL_I1649	-	putative membrane protein, putative phage gene
1515	 45.59	+1	1750329..1750532	-	67	209695149	-	VSAL_I1650	-	putative membrane protein, putative phage gene
1516	 32.53	-2	1750561..1751307	-	248	209695150	-	VSAL_I1651	-	hypothetical protein, putative phage gene
1517	 35.94	-1	1751427..1752308	-	293	209695151	-	VSAL_I1652	-	transposase
1518	 37.82	0	1753065..1753376	+	103	209695152	-	VSAL_I1654	-	transposase
1519	 36.21	-1	1753373..1753720	+	115	209695153	-	VSAL_I1655	-	transposase
1520	 39.65	0	1753792..1755279	+	495	209695154	-	VSAL_I1656	-	transposase
1521	 42.78	+1	1756764..1757726	+	320	209695155	-	VSAL_I1658	-	glycosylasparaginase
1522	 35.62	-1	1757741..1758046	+	101	209695156	-	VSAL_I1659	-	PTS system, Lactose/Cellobiose specific IIB subunit
1523	 38.01	0	1758057..1758377	+	106	209695157	chbA	VSAL_I1660	-	PTS system, lactose/cellobiose specific IIA subunit
1524	 37.78	0	1758749..1759063	+	104	209695158	-	VSAL_I1662	-	transposase
1525	 36.21	-1	1759060..1759407	+	115	209695159	-	VSAL_I1663	-	transposase
1526	 39.78	0	1759479..1760966	+	495	209695160	-	VSAL_I1664	-	transposase
39.44	MEAN

3.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.