version 1.0
Aliivibrio salmonicida LFI1238 chromosome 1, complete genome - 1..3325165 2820 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1413 35.54 -1 1645945..1646397 + 150 209695047 - VSAL_I1542 - hypothetical protein 1414 43.13 +1 1646621..1647253 + 210 209695048 proQ VSAL_I1543 - ProP effector 1415 37.94 0 1647271..1649289 + 672 209695049 prc VSAL_I1544 - tail-specific protease precursor 1416 29.63 -2 1649358..1650140 + 260 209695050 - VSAL_I1545 - hypothetical protein 1417 38.22 0 1653013..1653237 + 74 209695051 - VSAL_I1547 - hypothetical protein 1418 39.66 0 1658502..1659512 + 336 209695052 pyrD VSAL_I1549 - dihydroorotate dehydrogenase 1419 39.26 0 1659678..1660268 + 196 209695053 - VSAL_I1550 - hypothetical protein 1420 39.73 0 1660800..1662956 + 718 209695054 - VSAL_I1551 - putative RNA methylase 1421 39.09 0 1662962..1663204 + 80 209695055 - VSAL_I1552 - putative glutaredoxin 1422 39.77 0 1663185..1665095 + 636 209695056 uup VSAL_I1553 - ABC transporter ATP-binding protein 1423 40.54 0 1665104..1666768 + 554 209695057 - VSAL_I1554 - hypothetical protein 1424 44.83 +1 1666969..1667142 + 57 209695058 rmf VSAL_I1555 - ribosome modulation factor 1425 41.23 0 1667298..1667816 - 172 209695059 fabA VSAL_I1556 - 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase 1426 37.95 0 1667882..1669549 - 555 209695060 - VSAL_I1557 - putative protease La homolog 1427 31.77 -2 1669730..1670176 + 148 209695061 - VSAL_I1558 - hypothetical protein 1428 33.88 -1 1670230..1670781 - 183 209695062 - VSAL_I1559 - putative lipoprotein 1429 33.57 -1 1671140..1673233 - 697 209695063 - VSAL_I1560 - response regulator, histidine kinase 1430 35.78 -1 1673234..1674418 - 394 209695064 - VSAL_I1561 - hypothetical protein 1431 34.65 -1 1674517..1674972 - 151 209695065 - VSAL_I1562 - hypothetical protein 1432 41.51 0 1675242..1676672 + 476 209695066 ctaD VSAL_I1563 - cytochrome c oxidase subunit 1 1433 42.32 0 1676685..1677296 + 203 209695067 fixO VSAL_I1564 - mono-heme cytochrome c 1434 38.80 0 1677307..1677489 + 60 209695068 - VSAL_I1565 - Cbb3-type cytochrome oxidase component 1435 41.85 0 1677486..1678460 + 324 209695069 - VSAL_I1566 - diheme cytochrome c 1436 36.21 -1 1678533..1679018 + 161 209695070 - VSAL_I1567 - hypothetical protein 1437 39.35 0 1679025..1681400 + 791 209695071 - VSAL_I1568 - putative cation-transporting ATPase 1438 35.67 -1 1681393..1681563 + 56 209695072 - VSAL_I1569 - cytochrome oxidase maturation protein (cbb3-t) 1439 38.96 0 1681553..1682227 + 224 209695073 - VSAL_I1570 - membrane protein 1440 38.91 0 1682324..1683076 + 250 209695074 fnr VSAL_I1571 - fumarate and nitrate reduction regulatory protein 1441 38.94 0 1683229..1684173 + 314 209695075 uspE VSAL_I1572 - universal stress protein E 1442 39.07 0 1684330..1685253 + 307 209695076 - VSAL_I1573 - hypothetical protein 1443 37.78 0 1685410..1685724 + 104 209695077 - VSAL_I1574 - transposase 1444 36.21 -1 1685721..1686068 + 115 209695078 - VSAL_I1575 - transposase 1445 39.72 0 1686140..1687627 + 495 209695079 - VSAL_I1576 - transposase 1446 37.31 0 1687651..1688304 - 217 209695080 - VSAL_I1577 - hypothetical protein 1447 39.70 0 1688306..1689043 - 245 209695081 - VSAL_I1578 - putative lipoprotein 1448 36.79 0 1689051..1689860 - 269 209695082 - VSAL_I1579 - membrane protein 1449 41.38 0 1690197..1691315 + 372 209695083 potA VSAL_I1580 - spermidine/putrescine transport ATP-binding protein PotA 1450 36.60 0 1691299..1692156 + 285 209695084 potB VSAL_I1581 - spermidine/putrescine transport system permease protein PotB 1451 38.00 0 1692156..1692926 + 256 209695085 potC VSAL_I1582 - spermidine/putrescine transport system permease protein PotC 1452 38.48 0 1692980..1694068 + 362 209695086 potD VSAL_I1583 - spermidine/putrescine-binding periplasmic protein precursor (SPBP) 1453 39.18 0 1694251..1695294 + 347 209695087 potD VSAL_I1584 - spermidine/putrescine-binding periplasmic protein precursor (SPBP) 1454 39.50 0 1695383..1696096 - 237 209695088 npdA VSAL_I1585 - NAD-dependent deacetylase 1455 37.83 0 1696300..1697211 + 303 209695089 - VSAL_I1586 - HTH-type transcriptional regulator, LysR family 1456 41.03 0 1697451..1698671 + 406 209695090 - VSAL_I1587 - sodium-dependent nucleoside transporter 1457 38.83 0 1698752..1699042 - 96 209695091 - VSAL_I1588 - hypothetical protein 1458 38.46 0 1699160..1699471 - 103 209695092 - VSAL_I1589 - hypothetical protein 1459 37.44 0 1699484..1700140 - 218 209695093 qnr VSAL_I1590 - quinolone resistance determinant QnrC 1460 34.53 -1 1700575..1700991 - 138 209695094 - VSAL_I1591 - hypothetical protein 1461 35.74 -1 1701252..1701584 - 110 209695095 - VSAL_I1592 - hypothetical protein 1462 37.27 0 1701633..1701962 - 109 209695096 - VSAL_I1593 - hypothetical protein 1463 37.78 0 1701980..1702384 - 134 209695097 - VSAL_I1594 - putative NUDIX hydrolase 1464 38.77 0 1702528..1703538 + 336 209695098 - VSAL_I1595 - putative lipoprotein 1465 32.54 -2 1703556..1704059 - 167 209695099 - VSAL_I1596 - membrane protein 1466 38.60 0 1704213..1706168 - 651 209695100 - VSAL_I1597 - soluble lytic murein transglycosylase precursor 1467 37.04 0 1706247..1706543 - 98 209695101 - VSAL_I1598 - membrane protein 1468 41.48 0 1706725..1708062 + 445 209695102 - VSAL_I1599 - putative polysaccharide deacetylase 1469 37.06 0 1708107..1708508 - 133 209695103 - VSAL_I1600 - hypothetical protein 1470 35.94 -1 1708787..1709668 + 293 209695104 - VSAL_I1601 - transposase 1471 32.92 -2 1710845..1711087 + 80 209695105 - VSAL_I1603 - hypothetical protein 1472 35.94 -1 1711527..1712408 - 293 209695106 - VSAL_I1605 - transposase 1473 34.35 -1 1712535..1712927 + 130 209695107 - VSAL_I1606 - hypothetical protein 1474 37.36 0 1713042..1714034 - 330 209695108 - VSAL_I1607 - 3',5'-cyclic-nucleotide phosphodiesterase 1475 42.62 +1 1714289..1715311 + 340 209695109 galR VSAL_I1608 - HTH-type transcriptional regulator GalR 1476 42.96 +1 1715448..1716902 + 484 209695110 - VSAL_I1609 - sodium/proton antiporter 1477 40.92 0 1716912..1718084 + 390 209695111 - VSAL_I1610 - putative aminotransferase class I and II 1478 37.32 0 1718165..1718992 - 275 209695112 - VSAL_I1611 - HTH-type transcriptional regulator, AraC family 1479 39.69 0 1719060..1719956 + 298 209695113 - VSAL_I1612 - integral membrane protein 1480 39.21 0 1720037..1721143 - 368 209695114 manA VSAL_I1613 - mannose-6-phosphate isomerase (phosphomannose isomerase) 1481 39.66 0 1721143..1722312 - 389 209695115 malY VSAL_I1614 - cystathionine beta-lyase 1482 41.25 0 1722394..1723971 - 525 209695116 malX VSAL_I1615 - PTS permease for glucose 1483 35.70 -1 1724094..1724516 + 140 209695117 - VSAL_I1616 - transposase 1484 34.04 -1 1724534..1725100 + 188 209695118 - VSAL_I1617 - transposase 1485 38.61 0 1725340..1726362 + 340 209695119 malI VSAL_I1618 - maltose regulon regulatory protein MalI 1486 40.32 0 1726446..1727318 - 290 209695120 - VSAL_I1619 - integral membrane protein 1487 35.70 -1 1727439..1727861 + 140 209695121 - VSAL_I1620 - transposase 1488 34.04 -1 1727879..1728445 + 188 209695122 - VSAL_I1621 - transposase 1489 36.01 -1 1728578..1728988 - 136 209695123 - VSAL_I1622 - putative cell wall lytic enzyme 1490 40.05 0 1729423..1730166 + 247 209695124 - VSAL_I1623 - putative sucrose-6F-phosphate phosphohydrolase 1491 36.87 0 1730343..1730993 - 216 209695125 elbB VSAL_I1624 - enhancing lycopene biosynthesis protein 2 1492 34.81 -1 1731257..1731661 + 134 209695126 - VSAL_I1625 - hypothetical protein 1493 34.98 -1 1731713..1732441 + 242 209695127 - VSAL_I1626 - MltA-interacting protein MipA 1494 30.46 -2 1732609..1733025 + 138 209695128 - VSAL_I1627 - membrane protein 1495 30.94 -2 1733066..1734028 + 320 209695129 - VSAL_I1628 - putative radical SAM superfamily protein 1496 36.26 -1 1734710..1735324 + 204 209695130 - VSAL_I1630 - hypothetical protein 1497 35.70 -1 1736783..1737205 + 140 209695131 - VSAL_I1632 - transposase 1498 34.04 -1 1737223..1737789 + 188 209695132 - VSAL_I1633 - transposase 1499 36.07 -1 1737876..1738826 + 316 209695133 - VSAL_I1634 - hypothetical protein 1500 30.00 -2 1738833..1740002 + 389 209695134 - VSAL_I1635 - putative methylthioribose kinase 1501 32.97 -2 1740065..1741708 - 547 209695135 - VSAL_I1636 - methyl-accepting chemotaxis protein 1502 39.60 0 1741945..1742901 + 318 209695136 - VSAL_I1637 - transposase 1503 40.62 0 1743084..1743371 + 95 209695137 - VSAL_I1638 - hypothetical protein, putative phage gene 1504 36.31 -1 1743368..1743871 + 167 209695138 - VSAL_I1639 - hypothetical protein, putative phage gene 1505 37.80 0 1744160..1744405 - 81 209695139 - VSAL_I1640 - hypothetical protein, putative phage gene 1506 35.98 -1 1744395..1744658 - 87 209695140 - VSAL_I1641 - hypothetical protein, putative phage gene 1507 27.97 -2 1744838..1745956 - 372 209695141 - VSAL_I1642 - hypothetical protein, putative phage gene 1508 31.72 -2 1745949..1746257 - 102 209695142 - VSAL_I1643 - hypothetical protein, putative phage gene 1509 33.03 -2 1746239..1746901 - 220 209695143 - VSAL_I1644 - hypothetical protein, putative phage gene 1510 38.73 0 1747082..1747396 - 104 209695144 - VSAL_I1645 - putative DNA-binding protein, putative phage gene 1511 39.22 0 1747383..1747739 - 118 209695145 - VSAL_I1646 - hypothetical protein, putative phage gene 1512 34.65 -1 1747924..1748379 - 151 209695146 - VSAL_I1647 - putative membrane protein, putative phage gene 39.44 MEAN 3.11 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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